Conservation of cofitness between GFF817 and GFF2780 in Hydrogenophaga sp. GW460-11-11-14-LB1

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 1.0 GFF2780 Pyruvate kinase (EC 2.7.1.40) 0.70 16
Variovorax sp. OAS795 0.53 ABID97_RS23860 RsmD family RNA methyltransferase 0.81 ABID97_RS01755 pyruvate kinase low > 91
Variovorax sp. SCN45 0.51 GFF2320 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.82 GFF5504 Pyruvate kinase (EC 2.7.1.40) low > 127
Ralstonia solanacearum UW163 0.44 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.68 UW163_RS01430 pyruvate kinase — —
Ralstonia solanacearum PSI07 0.44 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.68 RPSI07_RS21150 pyruvate kinase low > 81
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.68 RALBFv3_RS12180 pyruvate kinase low > 76
Ralstonia solanacearum GMI1000 0.44 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.68 RS_RS02865 pyruvate kinase low > 80
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS02815 methyltransferase 0.70 BPHYT_RS16265 hypothetical protein low > 109
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.69 ABZR87_RS08070 pyruvate kinase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.69 H281DRAFT_04189 pyruvate kinase low > 103
Paraburkholderia graminis OAS925 0.39 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase 0.69 ABIE53_003427 pyruvate kinase 0.26 80
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.69 QEN71_RS02430 pyruvate kinase low > 153
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS01990 methyltransferase 0.68 RR42_RS03210 pyruvate kinase low > 128
Dechlorosoma suillum PS 0.35 Dsui_1027 RNA methyltransferase, RsmD family 0.62 Dsui_0052 pyruvate kinase low > 51
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS20695 methyltransferase 0.68 HSERO_RS03350 hypothetical protein low > 78
Pectobacterium carotovorum WPP14 0.34 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase 0.47 HER17_RS11790 pyruvate kinase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.45 OHPLBJKB_01874 Pyruvate kinase II low > 73
Pseudomonas sp. RS175 0.32 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.47 PFR28_03455 Pyruvate kinase II low > 88
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.47 AO356_17830 pyruvate kinase low > 104
Marinobacter adhaerens HP15 0.32 HP15_3491 conserved hypothetical protein 0.45 HP15_2176 pyruvate kinase II low > 73
Castellaniella sp019104865 MT123 0.32 ABCV34_RS10145 RsmD family RNA methyltransferase 0.47 ABCV34_RS02525 pyruvate kinase low > 48
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.47 CSW01_10025 pyruvate kinase low > 62
Escherichia coli ECOR38 0.32 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 HEPCGN_04725 pyk pyruvate kinase low > 85
Escherichia coli ECRC98 0.32 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 JDDGAC_00895 pyk pyruvate kinase — —
Escherichia coli BL21 0.32 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.45 ECD_01825 pyruvate kinase II low > 60
Escherichia coli ECRC101 0.32 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 MCAODC_19085 pyk pyruvate kinase — —
Enterobacter sp. TBS_079 0.32 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D 0.45 MPMX20_02759 Pyruvate kinase II low > 85
Escherichia coli ECRC101 0.32 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 OKFHMN_26320 pyk pyruvate kinase — —
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.47 Pf6N2E2_5494 Pyruvate kinase (EC 2.7.1.40) low > 103
Escherichia coli ECRC62 0.32 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 BNILDI_15630 pyk pyruvate kinase — —
Escherichia coli BW25113 0.32 b3465 yhhF predicted methyltransferase (NCBI) 0.45 b1854 pykA pyruvate kinase (NCBI) low > 76
Escherichia coli ECOR27 0.32 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 NOLOHH_16835 pyk pyruvate kinase low > 57
Escherichia coli ECRC102 0.32 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 NIAGMN_01740 pyk pyruvate kinase — —
Escherichia coli Nissle 1917 0.32 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 ECOLIN_RS10330 pyruvate kinase — —
Escherichia coli ECRC99 0.32 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 KEDOAH_01785 pyk pyruvate kinase — —
Escherichia fergusonii Becca 0.32 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.45 EFB2_02088 Pyruvate kinase II low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.45 GFF1633 Pyruvate kinase (EC 2.7.1.40) low > 78
Rhodanobacter denitrificans MT42 0.31 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.45 LRK55_RS05530 pyruvate kinase low > 63
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.45 LRK54_RS05775 pyruvate kinase low > 59
Shewanella amazonensis SB2B 0.31 Sama_3469 hypothetical protein (RefSeq) 0.45 Sama_1814 pyruvate kinase (RefSeq) low > 62
Erwinia tracheiphila SCR3 0.31 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.46 LU632_RS13370 pyk pyruvate kinase 0.53 14
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.47 PfGW456L13_1813 Pyruvate kinase (EC 2.7.1.40) low > 87
Enterobacter asburiae PDN3 0.31 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.45 EX28DRAFT_0702 pyruvate kinase low > 76
Dickeya dianthicola 67-19 0.31 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase 0.46 HGI48_RS10155 pyruvate kinase low > 71
Klebsiella michiganensis M5al 0.31 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 BWI76_RS18115 pyruvate kinase low > 92
Dickeya dianthicola ME23 0.30 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase 0.46 DZA65_RS10570 pyruvate kinase low > 75
Serratia liquefaciens MT49 0.30 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase 0.46 IAI46_14585 pyruvate kinase low > 86
Rahnella sp. WP5 0.30 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase 0.46 EX31_RS10640 pyruvate kinase low > 89
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.44 OKGIIK_01070 pyk pyruvate kinase low > 52
Pseudomonas fluorescens SBW25 0.30 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.46 PFLU_RS24255 pyruvate kinase low > 109
Pseudomonas fluorescens SBW25-INTG 0.30 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.46 PFLU_RS24255 pyruvate kinase low > 109
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.47 AO353_03775 pyruvate kinase low > 101
Pseudomonas simiae WCS417 0.30 PS417_26825 16S rRNA methyltransferase 0.46 PS417_22620 pyruvate kinase — —
Lysobacter sp. OAE881 0.30 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.42 ABIE51_RS17040 pyruvate kinase low > 62
Pseudomonas fluorescens FW300-N1B4 0.30 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.47 Pf1N1B4_678 Pyruvate kinase (EC 2.7.1.40) — —
Shewanella sp. ANA-3 0.29 Shewana3_3973 putative methyltransferase (RefSeq) 0.45 Shewana3_2153 pyruvate kinase (RefSeq) low > 73
Shewanella loihica PV-4 0.29 Shew_3607 putative methyltransferase (RefSeq) 0.46 Shew_2050 pyruvate kinase (RefSeq) — —
Pseudomonas sp. S08-1 0.29 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.44 OH686_18800 pyruvate kinase low > 80
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.45 Psyr_4029 pyruvate kinase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.45 Psyr_4029 pyruvate kinase low > 86
Shewanella oneidensis MR-1 0.29 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.45 SO2491 pykA pyruvate kinase II (NCBI ptt file) low > 76
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0443 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) 0.49 B158DRAFT_1404 pyruvate kinase low > 40
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.42 ABZR86_RS18630 pyruvate kinase low > 74
Pseudomonas putida KT2440 0.27 PP_5114 putative adenine methyltransferase 0.46 PP_1362 pyruvate kinase II low > 96
Pantoea sp. MT58 0.27 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase 0.46 IAI47_08485 pyruvate kinase low > 76
Pseudomonas stutzeri RCH2 0.27 Psest_0255 RNA methyltransferase, RsmD family 0.47 Psest_3190 pyruvate kinase — —
Phaeobacter inhibens DSM 17395 0.21 PGA1_c29260 ribosomal RNA small subunit methyltransferase D 0.30 PGA1_c06970 pyruvate kinase PykA — —
Bifidobacterium breve UCC2003 0.19 BBR_RS19290 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.31 BBR_RS14295 pyruvate kinase — —
Bacteroides thetaiotaomicron VPI-5482 0.18 BT3979 putative methyltransferase (NCBI ptt file) 0.21 BT2841 pyruvate kinase (NCBI ptt file) low > 81
Fusobacterium nucleatum SB010 0.18 HUW76_03595 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.32 HUW76_00910 pyruvate kinase PykF — —

Not shown: 1 genomes with orthologs for GFF817 only; 32 genomes with orthologs for GFF2780 only