| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_622 | | exoribonuclease R | 1.0 | HP15_2504 | | carbohydrate kinase, YjeF related protein | 0.51 | 13 |
| Pseudomonas fluorescens FW300-N2C3 | 0.52 | AO356_08610 | | exoribonuclease R | 0.38 | AO356_08680 | | carbohydrate kinase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.52 | Pf6N2E2_3607 | | 3'-to-5' exoribonuclease RNase R | 0.38 | Pf6N2E2_3619 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | low | > 103 |
| Pseudomonas sp. RS175 | 0.52 | PFR28_05130 | | Ribonuclease R | 0.38 | PFR28_05116 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_144 | | 3'-to-5' exoribonuclease RNase R | 0.35 | PfGW456L13_159 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.52 | AO353_13200 | | exoribonuclease R | 0.37 | AO353_13120 | | carbohydrate kinase | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.51 | Pf1N1B4_1403 | | 3'-to-5' exoribonuclease RNase R | 0.38 | Pf1N1B4_1417 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.51 | Psyr_0579 | | RNAse R | 0.34 | Psyr_0567 | | Protein of unknown function UPF0031:YjeF-related protein, N-terminal | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.51 | Psyr_0579 | | RNAse R | 0.34 | Psyr_0567 | | Protein of unknown function UPF0031:YjeF-related protein, N-terminal | low | > 86 |
| Pseudomonas sp. S08-1 | 0.51 | OH686_15910 | | ribonuclease R | 0.37 | OH686_09495 | | NAD(P)H-hydrate epimerase / ADP-dependent (S)-NAD(P)H-hydrate dehydratase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.51 | Psest_0691 | | ribonuclease R | 0.38 | Psest_0678 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | low | > 67 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.46 | GFF832 | | '3'-to-5' exoribonuclease RNase R' transl_table=11 | 0.35 | GFF820 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | low | > 78 |
| Shewanella loihica PV-4 | 0.46 | Shew_3289 | | ribonuclease R (RefSeq) | 0.27 | Shew_0561 | | carbohydrate kinase, YjeF-related protein (RefSeq) | low | > 60 |
| Klebsiella michiganensis M5al | 0.46 | BWI76_RS02575 | | exoribonuclease R | 0.34 | BWI76_RS02510 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 92 |
| Enterobacter asburiae PDN3 | 0.46 | EX28DRAFT_3376 | | ribonuclease R | 0.34 | EX28DRAFT_3364 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | low | > 76 |
| Enterobacter sp. TBS_079 | 0.46 | MPMX20_00460 | | Ribonuclease R | 0.35 | MPMX20_00448 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | low | > 85 |
| Escherichia coli BW25113 | 0.46 | b4179 | vacB | putative enzyme (VIMSS) | 0.35 | b4167 | yjeF | predicted carbohydrate kinase (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.46 | ECOLIN_RS24265 | | ribonuclease R | 0.35 | ECOLIN_RS24205 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 52 |
| Escherichia coli BL21 | 0.46 | ECD_04046 | | exoribonuclease R, RNase R | 0.35 | ECD_04034 | | bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehydratase and N-terminal domain NAD(P)H-hydrate epimerase | low | > 60 |
| Escherichia coli ECRC102 | 0.46 | NIAGMN_10070 | rnr | ribonuclease R | 0.35 | NIAGMN_10130 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Escherichia coli ECRC62 | 0.46 | BNILDI_07005 | rnr | ribonuclease R | 0.35 | BNILDI_06945 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Escherichia coli ECRC98 | 0.46 | JDDGAC_15860 | rnr | ribonuclease R | 0.35 | JDDGAC_15920 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Escherichia coli ECOR27 | 0.46 | NOLOHH_04485 | rnr | ribonuclease R | 0.35 | NOLOHH_04545 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 57 |
| Escherichia coli ECRC101 | 0.46 | MCAODC_02735 | rnr | ribonuclease R | 0.35 | MCAODC_02795 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.46 | OHPLBJKB_03863 | | Ribonuclease R | 0.35 | OHPLBJKB_03875 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | low | > 73 |
| Escherichia coli ECRC99 | 0.46 | KEDOAH_15935 | rnr | ribonuclease R | 0.35 | KEDOAH_15875 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Escherichia fergusonii Becca | 0.46 | EFB2_04356 | | Ribonuclease R | 0.35 | EFB2_04368 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | low | > 86 |
| Escherichia coli ECRC101 | 0.46 | OKFHMN_12220 | rnr | ribonuclease R | 0.35 | OKFHMN_12280 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Escherichia coli ECOR38 | 0.46 | HEPCGN_10450 | rnr | ribonuclease R | 0.34 | HEPCGN_10510 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 85 |
| Pectobacterium carotovorum WPP14 | 0.45 | HER17_RS03835 | | ribonuclease R | 0.35 | HER17_RS02560 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.45 | LU632_RS21750 | rnr | ribonuclease R | 0.33 | LU632_RS02030 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.45 | CSW01_13155 | | ribonuclease R | 0.29 | CSW01_14940 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 62 |
| Pantoea sp. MT58 | 0.45 | IAI47_02625 | | ribonuclease R | 0.32 | IAI47_02565 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 76 |
| Rahnella sp. WP5 | 0.45 | EX31_RS08785 | | ribonuclease R | 0.36 | EX31_RS08845 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 89 |
| Dickeya dadantii 3937 | 0.45 | DDA3937_RS17260 | | ribonuclease R | 0.32 | DDA3937_RS18635 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 74 |
| Dickeya dianthicola ME23 | 0.45 | DZA65_RS18405 | | ribonuclease R | 0.33 | DZA65_RS19705 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 75 |
| Kangiella aquimarina DSM 16071 | 0.45 | B158DRAFT_1989 | | ribonuclease R | 0.31 | B158DRAFT_1947 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | low | > 40 |
| Dickeya dianthicola 67-19 | 0.45 | HGI48_RS17315 | | ribonuclease R | 0.34 | HGI48_RS18570 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 71 |
| Serratia liquefaciens MT49 | 0.44 | IAI46_01660 | | ribonuclease R | 0.34 | IAI46_01600 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 86 |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_0697 | | RNAse R (RefSeq) | 0.27 | Shewana3_0592 | | carbohydrate kinase, YjeF related protein (RefSeq) | low | > 73 |
| Dechlorosoma suillum PS | 0.44 | Dsui_3128 | | ribonuclease R | 0.16 | Dsui_2898 | | yjeF-like protein, hydroxyethylthiazole kinase-related protein | — | — |
| Shewanella oneidensis MR-1 | 0.44 | SO3935 | vacB | ribonuclease R (NCBI ptt file) | 0.28 | SO0598 | yjeF | yjeF protein (NCBI ptt file) | low | > 76 |
| Cupriavidus basilensis FW507-4G11 | 0.44 | RR42_RS13065 | | ribonuclease R | 0.16 | RR42_RS09070 | | carbohydrate kinase | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.44 | HSERO_RS09290 | | ribonuclease R | 0.21 | HSERO_RS11180 | | sugar kinase | low | > 78 |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS18030 | | ribonuclease R | 0.18 | RPSI07_RS16180 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.43 | RS_RS06155 | | ribonuclease R | 0.18 | RS_RS08700 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 80 |
| Ralstonia solanacearum UW163 | 0.43 | UW163_RS12810 | | ribonuclease R | 0.19 | UW163_RS14605 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.43 | RALBFv3_RS15345 | | ribonuclease R | 0.19 | RALBFv3_RS01295 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.43 | ABZR87_RS10985 | | ribonuclease R | 0.20 | ABZR87_RS12740 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 80 |
| Alteromonas macleodii MIT1002 | 0.43 | MIT1002_03606 | | Ribonuclease R | 0.31 | MIT1002_03793 | | Nicotinamide nucleotide repair protein | low | > 70 |
| Shewanella amazonensis SB2B | 0.42 | Sama_3067 | | exoribonuclease II (RefSeq) | 0.25 | Sama_3030 | | YjeF protein (RefSeq) | low | > 62 |
| Burkholderia phytofirmans PsJN | 0.42 | BPHYT_RS08455 | | ribonuclease R | 0.20 | BPHYT_RS09505 | | carbohydrate kinase | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.42 | QEN71_RS22925 | | ribonuclease R | 0.19 | QEN71_RS21930 | | NAD(P)H-hydrate dehydratase | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.42 | H281DRAFT_00712 | | RNAse R | 0.18 | H281DRAFT_00907 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | low | > 103 |
| Castellaniella sp019104865 MT123 | 0.41 | ABCV34_RS06625 | | ribonuclease R | 0.19 | ABCV34_RS02980 | | NAD(P)H-hydrate dehydratase | low | > 48 |
| Dyella japonica UNC79MFTsu3.2 | 0.40 | ABZR86_RS08270 | | ribonuclease R | 0.31 | ABZR86_RS00840 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 74 |
| Lysobacter sp. OAE881 | 0.39 | ABIE51_RS07475 | | ribonuclease R | 0.32 | ABIE51_RS08050 | | NAD(P)H-hydrate dehydratase | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.3370.1 | | 3'-to-5' exoribonuclease RNase R | 0.30 | Xcc-8004.2253.1 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | low | > 74 |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_412 | | 3'-to-5' exoribonuclease RNase R | 0.17 | Ac3H11_415 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.38 | GFF4921 | | 3'-to-5' exoribonuclease RNase R | 0.15 | GFF4918 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | low | > 90 |
| Variovorax sp. OAS795 | 0.38 | ABID97_RS17200 | | ribonuclease R | 0.16 | ABID97_RS17190 | | NAD(P)H-hydrate dehydratase | low | > 91 |
| Variovorax sp. SCN45 | 0.38 | GFF399 | | 3'-to-5' exoribonuclease RNase R | 0.17 | GFF397 | | NAD(P)H-hydrate epimerase (EC 5.1.99.6) / ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136) | low | > 127 |
| Acinetobacter radioresistens SK82 | 0.35 | MPMX26_02684 | | Ribonuclease R | 0.23 | MPMX26_01782 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.25 | CA265_RS10530 | | ribonuclease R | 0.17 | CA265_RS24885 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 88 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.24 | ABZR88_RS04270 | | ribonuclease R | 0.17 | ABZR88_RS18865 | | NAD(P)H-hydrate dehydratase | low | > 71 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.23 | Echvi_0669 | | ribonuclease R | 0.17 | Echvi_0073 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.23 | CA264_17355 | | ribonuclease R | 0.21 | CA264_16280 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 74 |
| Rhodopseudomonas palustris CGA009 | 0.22 | TX73_016160 | | ribonuclease R | 0.15 | TX73_015380 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 86 |
| Agrobacterium fabrum C58 | 0.22 | Atu1303 | | exoribonuclease | 0.16 | Atu1768 | | hypothetical protein | low | > 89 |
| Phocaeicola dorei CL03T12C01 | 0.22 | ABI39_RS06100 | | ribonuclease R | 0.22 | ABI39_RS08310 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.22 | HMPREF1058_RS10970 | | ribonuclease R | 0.22 | HMPREF1058_RS00705 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 67 |
| Rhizobium sp. OAE497 | 0.22 | ABIE40_RS07350 | | ribonuclease R | 0.17 | ABIE40_RS09345 | | NAD(P)H-hydrate dehydratase | low | > 107 |
| Parabacteroides merdae CL09T00C40 | 0.21 | HMPREF1078_RS05885 | | ribonuclease R | 0.20 | HMPREF1078_RS15325 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 61 |
| Bacteroides stercoris CC31F | 0.21 | HMPREF1181_RS01550 | | ribonuclease R | 0.21 | HMPREF1181_RS06260 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 56 |
| Synechococcus elongatus PCC 7942 | 0.12 | Synpcc7942_1911 | zam | Cold shock protein | 0.11 | Synpcc7942_1273 | | hypothetical protein | low | > 38 |
Not shown: 7 genomes with orthologs for HP15_622 only; 20 genomes with orthologs for HP15_2504 only