Conservation of cofitness between GFF5493 and GFF1683 in Hydrogenophaga sp. GW460-11-11-14-LB1

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF5493 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) 1.0 GFF1683 Protein involved in catabolism of external DNA 0.81 9
Paraburkholderia graminis OAS925 0.70 ABIE53_006464 glucose-6-phosphate 1-dehydrogenase 0.40 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase low > 113
Burkholderia phytofirmans PsJN 0.70 BPHYT_RS24370 glucose-6-phosphate 1-dehydrogenase 0.41 BPHYT_RS06880 competence protein ComJ low > 109
Paraburkholderia sabiae LMG 24235 0.70 QEN71_RS08005 glucose-6-phosphate dehydrogenase 0.41 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 153
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS05510 glucose-6-phosphate 1-dehydrogenase 0.43 HSERO_RS10595 competence protein ComJ — —
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS22915 glucose-6-phosphate dehydrogenase 0.40 ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_14360 zwf glucose-6-phosphate dehydrogenase 0.25 OKGIIK_04560 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Ralstonia solanacearum GMI1000 0.52 RS_RS24615 glucose-6-phosphate dehydrogenase 0.40 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Ralstonia solanacearum PSI07 0.52 RPSI07_RS07315 glucose-6-phosphate dehydrogenase 0.41 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 81
Pseudomonas stutzeri RCH2 0.52 Psest_4089 glucose-6-phosphate 1-dehydrogenase 0.27 Psest_0408 Protein involved in catabolism of external DNA low > 67
Cupriavidus basilensis FW507-4G11 0.52 RR42_RS37405 glucose-6-phosphate dehydrogenase 0.39 RR42_RS09005 competence protein ComJ low > 128
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS16390 glucose-6-phosphate dehydrogenase 0.39 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS17130 glucose-6-phosphate dehydrogenase 0.39 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Rhodanobacter denitrificans MT42 0.51 LRK55_RS07600 glucose-6-phosphate dehydrogenase 0.25 LRK55_RS01780 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS07870 glucose-6-phosphate dehydrogenase 0.25 LRK54_RS02005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS14700 glucose-6-phosphate dehydrogenase 0.24 ABZR86_RS21180 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Rhizobium sp. OAE497 0.51 ABIE40_RS03200 glucose-6-phosphate dehydrogenase 0.25 ABIE40_RS06520 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Pseudomonas putida KT2440 0.51 PP_5351 glucose-6-phosphate 1-dehydrogenase 0.25 PP_4945 23S rRNA m(6)A2030 methyltransferase low > 96
Sinorhizobium meliloti 1021 0.51 SMc03070 glucose-6-phosphate 1-dehydrogenase 0.27 SMc00608 hypothetical protein low > 103
Agrobacterium fabrum C58 0.50 Atu0600 glucose-6-phosphate 1-dehydrogenase 0.29 Atu1135 hypothetical protein — —
Pseudomonas sp. S08-1 0.50 OH686_13085 glucose-6-phosphate dehydrogenase 0.26 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 80
Azospirillum sp. SherDot2 0.50 MPMX19_05119 Glucose-6-phosphate 1-dehydrogenase 0.26 MPMX19_01202 Ribosomal RNA large subunit methyltransferase J low > 112
Lysobacter sp. OAE881 0.49 ABIE51_RS01620 glucose-6-phosphate dehydrogenase 0.26 ABIE51_RS14285 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Acidovorax sp. GW101-3H11 0.47 Ac3H11_2076 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) 0.53 Ac3H11_3047 Protein involved in catabolism of external DNA low > 79
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_03360 glucose-6-phosphate dehydrogenase 0.24 AO353_12840 lactate dehydrogenase low > 101
Variovorax sp. SCN45 0.47 GFF5261 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) 0.57 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) low > 127
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_05160 glucose-6-phosphate dehydrogenase 0.24 AO356_08990 lactate dehydrogenase low > 104
Variovorax sp. OAS795 0.47 ABID97_RS07065 glucose-6-phosphate dehydrogenase 0.58 ABID97_RS25005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 91
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_2885 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) 0.24 Pf6N2E2_3679 Protein involved in catabolism of external DNA low > 103
Bosea sp. OAE506 0.47 ABIE41_RS23515 glucose-6-phosphate dehydrogenase 0.24 ABIE41_RS11490 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 77
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_589 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) 0.24 Pf1N1B4_1481 Protein involved in catabolism of external DNA — —
Alteromonas macleodii MIT1002 0.47 MIT1002_02407 Glucose-6-phosphate 1-dehydrogenase 0.26 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J low > 70
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_1120 glucose-6-phosphate 1-dehydrogenase 0.25 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_1120 glucose-6-phosphate 1-dehydrogenase 0.25 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_1901 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) 0.23 PfGW456L13_219 Protein involved in catabolism of external DNA low > 87
Pseudomonas sp. RS175 0.47 PFR28_00573 Glucose-6-phosphate 1-dehydrogenase 0.23 PFR28_05056 Ribosomal RNA large subunit methyltransferase J low > 88
Brevundimonas sp. GW460-12-10-14-LB2 0.46 A4249_RS10725 glucose-6-phosphate dehydrogenase 0.18 A4249_RS02525 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Pseudomonas simiae WCS417 0.46 PS417_22110 glucose-6-phosphate dehydrogenase 0.24 PS417_02200 lactate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.46 PFLU_RS23725 glucose-6-phosphate dehydrogenase 0.24 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS23725 glucose-6-phosphate dehydrogenase 0.24 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Shewanella sp. ANA-3 0.46 Shewana3_2151 glucose-6-phosphate 1-dehydrogenase (RefSeq) 0.29 Shewana3_4038 hypothetical protein (RefSeq) — —
Serratia liquefaciens MT49 0.46 IAI46_14575 glucose-6-phosphate dehydrogenase 0.32 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Shewanella oneidensis MR-1 0.46 SO2489 zwf glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) 0.29 SO4659 conserved hypothetical protein (NCBI ptt file) low > 76
Marinobacter adhaerens HP15 0.45 HP15_2179 glucose-6-phosphate 1-dehydrogenase 0.23 HP15_2563 protein containing DUF519 low > 73
Shewanella loihica PV-4 0.45 Shew_2048 glucose-6-phosphate 1-dehydrogenase (RefSeq) 0.30 Shew_3648 hypothetical protein (RefSeq) — —
Shewanella amazonensis SB2B 0.45 Sama_1812 glucose-6-phosphate 1-dehydrogenase (RefSeq) 0.27 Sama_3563 hypothetical protein (RefSeq) — —
Pectobacterium carotovorum WPP14 0.45 HER17_RS11780 glucose-6-phosphate dehydrogenase 0.32 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Rahnella sp. WP5 0.45 EX31_RS10630 glucose-6-phosphate dehydrogenase 0.33 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Escherichia coli BW25113 0.44 b1852 zwf glucose-6-phosphate 1-dehydrogenase (NCBI) 0.31 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) — —
Escherichia coli ECOR27 0.44 NOLOHH_16845 zwf glucose-6-phosphate dehydrogenase 0.32 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_01877 Glucose-6-phosphate 1-dehydrogenase 0.31 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J low > 73
Escherichia coli Nissle 1917 0.44 ECOLIN_RS10315 glucose-6-phosphate dehydrogenase 0.32 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia fergusonii Becca 0.44 EFB2_02091 Glucose-6-phosphate 1-dehydrogenase 0.32 EFB2_00316 Ribosomal RNA large subunit methyltransferase J low > 86
Pantoea sp. MT58 0.44 IAI47_08495 glucose-6-phosphate dehydrogenase 0.32 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Escherichia coli ECOR38 0.44 HEPCGN_04740 zwf glucose-6-phosphate dehydrogenase 0.32 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 85
Escherichia coli ECRC101 0.44 OKFHMN_26335 zwf glucose-6-phosphate dehydrogenase 0.32 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Dickeya dianthicola 67-19 0.44 HGI48_RS10165 glucose-6-phosphate dehydrogenase 0.32 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 71
Escherichia coli ECRC99 0.44 KEDOAH_01770 zwf glucose-6-phosphate dehydrogenase 0.32 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Dickeya dadantii 3937 0.44 DDA3937_RS10135 glucose-6-phosphate dehydrogenase 0.32 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Escherichia coli ECRC98 0.44 JDDGAC_00910 zwf glucose-6-phosphate dehydrogenase 0.33 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC102 0.44 NIAGMN_01725 zwf glucose-6-phosphate dehydrogenase 0.32 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli BL21 0.44 ECD_01823 glucose-6-phosphate 1-dehydrogenase 0.32 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent — —
Escherichia coli ECRC101 0.44 MCAODC_19070 zwf glucose-6-phosphate dehydrogenase 0.32 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Dickeya dianthicola ME23 0.44 DZA65_RS10580 glucose-6-phosphate dehydrogenase 0.32 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Escherichia coli ECRC62 0.44 BNILDI_15640 zwf glucose-6-phosphate dehydrogenase 0.32 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Erwinia tracheiphila SCR3 0.44 LU632_RS13360 zwf glucose-6-phosphate dehydrogenase 0.32 LU632_RS19485 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF1631 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) 0.32 GFF515 Protein involved in catabolism of external DNA low > 78
Enterobacter sp. TBS_079 0.44 MPMX20_02757 Glucose-6-phosphate 1-dehydrogenase 0.32 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J low > 85
Enterobacter asburiae PDN3 0.44 EX28DRAFT_0704 glucose-6-phosphate 1-dehydrogenase 0.32 EX28DRAFT_4062 Protein involved in catabolism of external DNA — —
Klebsiella michiganensis M5al 0.44 BWI76_RS18105 glucose-6-phosphate dehydrogenase 0.32 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Phaeobacter inhibens DSM 17395 0.43 PGA1_c15160 glucose-6-phosphate 1-dehydrogenase 0.24 PGA1_c26480 Protein involved in catabolism of external DNA low > 62
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_02136 glucose-6-phosphate 1-dehydrogenase 0.18 CCNA_01152 external DNA uptake/catabolism protein low > 67
Caulobacter crescentus NA1000 0.42 CCNA_02136 glucose-6-phosphate 1-dehydrogenase 0.18 CCNA_01152 external DNA uptake/catabolism protein — —
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_18625 glucose-6-phosphate dehydrogenase 0.31 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 62
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.2450.1 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) 0.26 Xcc-8004.1778.1 Protein involved in catabolism of external DNA low > 74
Rhodopseudomonas palustris CGA009 0.35 TX73_018845 glucose-6-phosphate dehydrogenase 0.26 TX73_006025 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 86

Not shown: 15 genomes with orthologs for GFF5493 only; 5 genomes with orthologs for GFF1683 only