Conservation of cofitness between GFF1934 and GFF1499 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 1.0 GFF1499 Ribosome-binding factor A 0.80 18
Escherichia coli BW25113 0.97 b2318 truA tRNA pseudouridine synthase A (NCBI) 0.99 b3167 rbfA ribosome-binding factor A (NCBI) — —
Escherichia coli BL21 0.97 ECD_02243 tRNA pseudouridine(38-40) synthase 0.99 ECD_03034 30s ribosome binding factor — —
Escherichia coli ECOR27 0.97 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA 0.99 NOLOHH_09920 rbfA 30S ribosome-binding factor RbfA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.97 OHPLBJKB_01387 tRNA pseudouridine synthase A 0.99 OHPLBJKB_00533 30S ribosome-binding factor — —
Escherichia coli ECRC102 0.96 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase 0.99 NIAGMN_15880 rbfA 30S ribosome-binding factor RbfA — —
Escherichia coli ECRC101 0.96 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase 0.99 OKFHMN_18120 rbfA 30S ribosome-binding factor RbfA — —
Escherichia coli Nissle 1917 0.96 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA 0.99 ECOLIN_RS18190 30S ribosome-binding factor RbfA — —
Escherichia coli ECOR38 0.96 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase 0.99 HEPCGN_16995 rbfA 30S ribosome-binding factor RbfA — —
Escherichia coli ECRC101 0.96 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase 0.99 MCAODC_08640 rbfA 30S ribosome-binding factor RbfA — —
Escherichia coli ECRC99 0.96 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase 0.99 KEDOAH_10030 rbfA 30S ribosome-binding factor RbfA — —
Escherichia coli ECRC98 0.96 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase 0.99 JDDGAC_21745 rbfA 30S ribosome-binding factor RbfA — —
Escherichia coli ECRC62 0.96 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA 0.99 BNILDI_01615 rbfA 30S ribosome-binding factor RbfA — —
Escherichia fergusonii Becca 0.96 EFB2_01540 tRNA pseudouridine synthase A 0.99 EFB2_00656 30S ribosome-binding factor — —
Enterobacter sp. TBS_079 0.92 MPMX20_03253 tRNA pseudouridine synthase A 0.93 MPMX20_04072 30S ribosome-binding factor — —
Enterobacter asburiae PDN3 0.92 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase 0.94 EX28DRAFT_3218 ribosome-binding factor A — —
Klebsiella michiganensis M5al 0.90 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA 0.98 BWI76_RS25085 ribosome-binding factor A — —
Pectobacterium carotovorum WPP14 0.81 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA 0.76 HER17_RS18205 30S ribosome-binding factor RbfA — —
Pantoea sp. MT58 0.80 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA 0.85 IAI47_17020 30S ribosome-binding factor RbfA low > 76
Erwinia tracheiphila SCR3 0.80 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA 0.85 LU632_RS21055 rbfA 30S ribosome-binding factor RbfA — —
Serratia liquefaciens MT49 0.80 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA 0.75 IAI46_01940 30S ribosome-binding factor RbfA low > 86
Dickeya dianthicola ME23 0.79 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA 0.75 DZA65_RS03240 30S ribosome-binding factor RbfA — —
Dickeya dianthicola 67-19 0.79 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA 0.75 HGI48_RS03245 30S ribosome-binding factor RbfA — —
Dickeya dadantii 3937 0.79 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA 0.76 DDA3937_RS03075 30S ribosome-binding factor RbfA — —
Rahnella sp. WP5 0.73 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA 0.75 EX31_RS08535 30S ribosome-binding factor RbfA low > 89
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA 0.54 CSW01_03395 ribosome-binding factor A — —
Shewanella sp. ANA-3 0.70 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.51 Shewana3_1031 rbfA ribosome-binding factor A (RefSeq) low > 73
Shewanella amazonensis SB2B 0.69 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) 0.49 Sama_0962 rbfA ribosome-binding factor A (RefSeq) — —
Shewanella loihica PV-4 0.69 Shew_2306 tRNA pseudouridine synthase A (RefSeq) 0.40 Shew_2826 rbfA ribosome-binding factor A (RefSeq) — —
Alteromonas macleodii MIT1002 0.65 MIT1002_02529 tRNA pseudouridine synthase A 0.46 MIT1002_01772 Ribosome-binding factor A — —
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_1483 pseudouridylate synthase I 0.48 B158DRAFT_0109 ribosome-binding factor A low > 40
Pseudomonas sp. S08-1 0.56 OH686_04450 tRNA pseudouridine(38-40) synthase 0.44 OH686_17150 ribosome-binding factor A — —
Pseudomonas putida KT2440 0.56 PP_1994 tRNA pseudouridine (38-40)synthase 0.45 PP_4711 Ribosome-binding factor A — —
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.46 PFLU_RS25805 30S ribosome-binding factor RbfA — —
Pseudomonas fluorescens SBW25 0.55 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.46 PFLU_RS25805 30S ribosome-binding factor RbfA low > 109
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.44 PfGW456L13_5087 Ribosome-binding factor A — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.45 Pf1N1B4_1160 Ribosome-binding factor A — —
Pseudomonas simiae WCS417 0.54 PS417_18565 pseudouridine synthase 0.47 PS417_23965 ribosome-binding factor A — —
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_21435 pseudouridine synthase 0.45 AO356_07405 ribosome-binding factor A — —
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.45 Pf6N2E2_3352 Ribosome-binding factor A — —
Pseudomonas sp. RS175 0.53 PFR28_02817 tRNA pseudouridine synthase A 0.46 PFR28_00091 30S ribosome-binding factor — —
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_1662 tRNA pseudouridine synthase 0.43 Psyr_4179 ribosome-binding factor A — —
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_20660 pseudouridine synthase 0.45 AO353_05555 ribosome-binding factor A — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_1662 tRNA pseudouridine synthase 0.43 Psyr_4179 ribosome-binding factor A — —
Marinobacter adhaerens HP15 0.52 HP15_1829 tRNA pseudouridine synthase A 0.37 HP15_3066 ribosome-binding factor A — —
Pseudomonas stutzeri RCH2 0.52 Psest_2585 pseudouridylate synthase I 0.49 Psest_0982 ribosome-binding factor A — —
Acinetobacter radioresistens SK82 0.49 MPMX26_00352 tRNA pseudouridine synthase A 0.33 MPMX26_00255 30S ribosome-binding factor low > 36
Dechlorosoma suillum PS 0.49 Dsui_3194 pseudouridylate synthase I 0.33 Dsui_2721 ribosome-binding factor A — —
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS16485 tRNA pseudouridine synthase A 0.33 HSERO_RS17990 ribosome-binding factor A — —
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS33885 tRNA pseudouridine synthase A 0.26 BPHYT_RS08075 ribosome-binding factor A — —
Lysobacter sp. OAE881 0.46 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA 0.31 ABIE51_RS08400 30S ribosome-binding factor RbfA — —
Paraburkholderia graminis OAS925 0.46 ABIE53_004807 tRNA pseudouridine38-40 synthase 0.26 ABIE53_001831 ribosome-binding factor A — —
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_06069 tRNA pseudouridine38-40 synthase 0.26 H281DRAFT_05105 ribosome-binding factor A — —
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA 0.26 QEN71_RS23095 30S ribosome-binding factor RbfA — —
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.32 Xcc-8004.2003.1 Ribosome-binding factor A — —
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA 0.25 LRK54_RS01040 30S ribosome-binding factor RbfA — —
Rhodanobacter denitrificans MT42 0.44 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA 0.25 LRK55_RS00815 30S ribosome-binding factor RbfA — —
Acidovorax sp. GW101-3H11 0.44 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.28 Ac3H11_2866 Ribosome-binding factor A — —
Ralstonia solanacearum UW163 0.43 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA 0.30 UW163_RS13145 30S ribosome-binding factor RbfA — —
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA 0.30 RALBFv3_RS15685 30S ribosome-binding factor RbfA — —
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA 0.28 ABZR86_RS06020 30S ribosome-binding factor RbfA — —
Ralstonia solanacearum GMI1000 0.42 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA 0.30 RS_RS06465 ribosome-binding factor A — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA 0.29 RPSI07_RS17670 30S ribosome-binding factor RbfA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.28 GFF4344 Ribosome-binding factor A — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA 0.25 OKGIIK_05855 rbfA 30S ribosome-binding factor RbfA — —
Variovorax sp. SCN45 0.41 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) 0.27 GFF221 Ribosome-binding factor A — —
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.29 ABZR87_RS11215 30S ribosome-binding factor RbfA — —
Variovorax sp. OAS795 0.40 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA 0.27 ABID97_RS16480 30S ribosome-binding factor RbfA — —
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS14370 tRNA pseudouridine synthase A 0.29 RR42_RS12840 ribosome-binding factor A — —
Synechococcus elongatus PCC 7942 0.29 Synpcc7942_2207 truA tRNA pseudouridine synthase A 0.23 Synpcc7942_0355 rbfA ribosome-binding factor A — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.27 CA264_17725 tRNA pseudouridine synthase A 0.21 CA264_17025 ribosome-binding factor A — —
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA 0.18 ABI39_RS07020 30S ribosome-binding factor RbfA — —
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS16775 tRNA pseudouridine(38-40) synthase TruA 0.18 HMPREF1058_RS09660 30S ribosome-binding factor RbfA — —
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA 0.24 CA265_RS22910 ribosome-binding factor A — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_1728 pseudouridylate synthase I 0.19 Echvi_1539 ribosome-binding factor A — —
Fusobacterium nucleatum SB010 0.24 HUW76_09850 tRNA pseudouridine(38-40) synthase TruA 0.20 HUW76_01040 30S ribosome-binding factor RbfA — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.20 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA 0.20 ABZR88_RS20030 ribosome-binding factor A — —

Not shown: 26 genomes with orthologs for GFF1934 only; 1 genomes with orthologs for GFF1499 only