| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rahnella sp. WP5 | 1.0 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.0 | EX31_RS20220 | | sulfate/thiosulfate ABC transporter permease CysT | 0.64 | 11 |
| Serratia liquefaciens MT49 | 0.72 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.83 | IAI46_18505 | | sulfate/thiosulfate ABC transporter permease CysT | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.66 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.77 | HER17_RS17220 | | sulfate/thiosulfate ABC transporter permease CysT | low | > 75 |
| Dickeya dianthicola 67-19 | 0.65 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.45 | HGI48_RS15985 | | sulfate ABC transporter permease subunit CysT | low | > 71 |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.46 | DDA3937_RS15845 | | sulfate ABC transporter permease subunit CysT | low | > 74 |
| Dickeya dianthicola ME23 | 0.64 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.45 | DZA65_RS17070 | | sulfate ABC transporter permease subunit CysT | low | > 75 |
| Enterobacter sp. TBS_079 | 0.61 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.78 | MPMX20_03316 | | Sulfate transport system permease protein CysT | low | > 85 |
| Enterobacter asburiae PDN3 | 0.61 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.78 | EX28DRAFT_0206 | | sulfate ABC transporter, permease protein CysT | low | > 76 |
| Pantoea sp. MT58 | 0.60 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.85 | IAI47_05390 | | sulfate/thiosulfate ABC transporter permease CysT | low | > 76 |
| Escherichia coli ECOR38 | 0.60 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.77 | HEPCGN_21330 | cysT | sulfate/thiosulfate ABC transporter permease CysT | low | > 87 |
| Escherichia coli Nissle 1917 | 0.60 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.78 | ECOLIN_RS13915 | | sulfate/thiosulfate ABC transporter permease CysT | low | > 55 |
| Escherichia coli BW25113 | 0.60 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | 0.77 | b2424 | cysU | sulfate/thiosulfate transporter subunit (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.60 | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.80 | OHPLBJKB_01299 | | Sulfate transport system permease protein CysT | low | > 73 |
| Escherichia coli ECRC100 | 0.60 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.77 | OKFHMN_22155 | cysT | sulfate/thiosulfate ABC transporter permease CysT | low | > 80 |
| Escherichia coli ECRC101 | 0.60 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.77 | MCAODC_12685 | cysT | sulfate/thiosulfate ABC transporter permease CysT | low | > 87 |
| Escherichia coli ECRC99 | 0.60 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.77 | KEDOAH_06065 | cysT | sulfate/thiosulfate ABC transporter permease CysT | — | — |
| Escherichia coli ECRC102 | 0.60 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.77 | NIAGMN_19925 | cysT | sulfate/thiosulfate ABC transporter permease CysT | — | — |
| Escherichia coli ECRC98 | 0.60 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.77 | JDDGAC_26105 | cysT | sulfate/thiosulfate ABC transporter permease CysT | low | > 86 |
| Escherichia coli ECOR27 | 0.59 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.77 | NOLOHH_13835 | cysT | sulfate/thiosulfate ABC transporter permease CysT | low | > 75 |
| Escherichia coli ECRC62 | 0.59 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.77 | BNILDI_12700 | cysT | sulfate/thiosulfate ABC transporter permease CysT | low | > 75 |
| Escherichia fergusonii Becca | 0.59 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.78 | EFB2_01453 | | Sulfate transport system permease protein CysT | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.77 | GFF2058 | | Sulfate transport system permease protein CysT | low | > 78 |
| Escherichia coli BL21 | 0.59 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | 0.80 | ECD_02324 | | sulfate/thiosulfate ABC transporter permease | low | > 61 |
| Klebsiella michiganensis M5al | 0.59 | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | 0.78 | BWI76_RS20700 | | sulfate/thiosulfate transporter subunit | low | > 92 |
| Erwinia tracheiphila SCR3 | 0.55 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.78 | LU632_RS06690 | cysT | sulfate/thiosulfate ABC transporter permease CysT | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.45 | CSW01_12410 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.51 | CSW01_02855 | | sulfate/thiosulfate ABC transporter permease CysT | low | > 62 |
| Shewanella oneidensis MR-1 | 0.41 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | 0.57 | SO3600 | cysT-1 | sulfate ABC transporter, permease protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_1110 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.58 | Shewana3_3190 | | sulfate ABC transporter, inner membrane subunit CysT (RefSeq) | low | > 73 |
| Marinobacter adhaerens HP15 | 0.34 | HP15_790 | | 23S rRNA 5-methyluridine methyltransferase | 0.62 | HP15_1345 | | sulphate ABC transporter, permease protein CysT | low | > 73 |
| Dyella japonica UNC79MFTsu3.2 | 0.34 | ABZR86_RS07120 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.36 | ABZR86_RS02885 | | sulfate ABC transporter permease subunit CysT | low | > 74 |
| Pseudomonas stutzeri RCH2 | 0.34 | Psest_1639 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.40 | Psest_4061 | | sulfate ABC transporter, permease protein CysT | low | > 67 |
| Acinetobacter radioresistens SK82 | 0.32 | MPMX26_00538 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.48 | MPMX26_02168 | | Sulfate transport system permease protein CysT | low | > 36 |
| Castellaniella sp019104865 MT123 | 0.32 | ABCV34_RS03050 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.48 | ABCV34_RS03940 | | sulfate ABC transporter permease subunit CysT | low | > 48 |
| Pseudomonas sp. S08-1 | 0.32 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.44 | OH686_11675 | | sulfate ABC transporter, permease protein CysT | low | > 80 |
| Rhodanobacter sp. FW510-T8 | 0.32 | OKGIIK_07840 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.43 | OKGIIK_10930 | cysT | sulfate ABC transporter permease subunit CysT | low | > 52 |
| Pseudomonas fluorescens FW300-N2C3 | 0.31 | AO356_19055 | | 23S rRNA methyltransferase | 0.45 | AO356_10680 | | sulfate ABC transporter permease | low | > 104 |
| Pseudomonas sp. RS175 | 0.31 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.44 | PFR28_04763 | | Sulfate transport system permease protein CysT | low | > 88 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.31 | Xcc-8004.3669.1 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.45 | Xcc-8004.4086.1 | | Sulfate transport system permease protein CysT | low | > 74 |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.40 | Pf6N2E2_4004 | | Sulfate transport system permease protein CysT | low | > 103 |
| Dechlorosoma suillum PS | 0.31 | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.55 | Dsui_0260 | | sulfate ABC transporter, permease protein CysT | low | > 51 |
| Pseudomonas fluorescens FW300-N1B4 | 0.31 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.44 | Pf1N1B4_1726 | | Sulfate transport system permease protein CysT | low | > 87 |
| Pseudomonas simiae WCS417 | 0.31 | PS417_20155 | | 23S rRNA methyltransferase | 0.44 | PS417_00935 | | sulfate ABC transporter permease | low | > 88 |
| Ralstonia solanacearum GMI1000 | 0.31 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.43 | RS_RS06745 | | sulfate ABC transporter permease subunit CysT | low | > 80 |
| Pseudomonas fluorescens SBW25 | 0.31 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.43 | PFLU_RS00950 | | sulfate ABC transporter permease subunit CysT | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.31 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.43 | PFLU_RS00950 | | sulfate ABC transporter permease subunit CysT | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.30 | RR42_RS13170 | | 23S rRNA methyltransferase | 0.43 | RR42_RS12260 | | sulfate transporter | low | > 128 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.30 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.45 | Psyr_0083 | | Binding-protein-dependent transport systems inner membrane component | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.30 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.45 | Psyr_0083 | | Binding-protein-dependent transport systems inner membrane component | low | > 86 |
| Ralstonia solanacearum IBSBF1503 | 0.30 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.44 | RALBFv3_RS00085 | | sulfate ABC transporter permease subunit CysT | low | > 76 |
| Ralstonia solanacearum UW163 | 0.30 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.44 | UW163_RS13415 | | sulfate ABC transporter permease subunit CysT | — | — |
| Ralstonia solanacearum PSI07 | 0.30 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.45 | RPSI07_RS17400 | | sulfate ABC transporter permease subunit CysT | low | > 81 |
| Lysobacter sp. OAE881 | 0.30 | ABIE51_RS13830 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.40 | ABIE51_RS01850 | | sulfate ABC transporter permease subunit CysT | low | > 62 |
| Ralstonia sp. UNC404CL21Col | 0.30 | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.46 | ABZR87_RS11540 | | sulfate ABC transporter permease subunit CysT | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.30 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.42 | PfGW456L13_485 | | Sulfate transport system permease protein CysT | low | > 87 |
| Herbaspirillum seropedicae SmR1 | 0.29 | HSERO_RS14825 | | 23S rRNA methyltransferase | 0.46 | HSERO_RS08230 | | sulfate/thiosulfate transporter subunit | low | > 78 |
| Pseudomonas putida KT2440 | 0.29 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.45 | PP_5170 | | sulfate ABC transporter, inner membrane subunit CysT | low | > 96 |
| Burkholderia phytofirmans PsJN | 0.29 | BPHYT_RS09125 | | 23S rRNA methyltransferase | 0.45 | BPHYT_RS08795 | | sulfate/thiosulfate transporter subunit | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.29 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.46 | QEN71_RS22585 | | sulfate ABC transporter permease subunit CysT | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.29 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | 0.46 | H281DRAFT_00779 | | sulfate transport system permease protein | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_02715 | | 23S rRNA methyltransferase | 0.44 | AO353_11545 | | sulfate ABC transporter permease | low | > 101 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.29 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.48 | GFF5097 | | Sulfate transport system permease protein CysT | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.28 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.48 | Ac3H11_911 | | Sulfate transport system permease protein CysT | low | > 79 |
| Variovorax sp. SCN45 | 0.27 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | 0.50 | GFF1288 | | Sulfate transport system permease protein CysT | low | > 127 |
| Synechococcus elongatus PCC 7942 | 0.19 | Synpcc7942_0241 | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.39 | Synpcc7942_1682 | cysT | Sulphate transport system permease protein 2 | low | > 38 |
| Sinorhizobium meliloti 1021 | 0.15 | SMc00974 | | RNA methyltransferase | 0.43 | SM_b21132 | | sulfate ABC transporter permease | low | > 103 |
| Rhodopseudomonas palustris CGA009 | 0.15 | TX73_004885 | | methyltransferase | 0.45 | TX73_003870 | | sulfate ABC transporter permease subunit CysT | low | > 86 |
| Magnetospirillum magneticum AMB-1 | 0.15 | AMB_RS01660 | | class I SAM-dependent RNA methyltransferase | 0.46 | AMB_RS10130 | | sulfate ABC transporter permease subunit CysT | low | > 64 |
| Bosea sp. OAE506 | 0.15 | ABIE41_RS22255 | | RNA methyltransferase | 0.47 | ABIE41_RS15355 | | sulfate ABC transporter permease subunit CysT | low | > 77 |
| Caulobacter crescentus NA1000 | 0.14 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | 0.45 | CCNA_01668 | | sulfate transport system permease protein cysT | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.14 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | 0.45 | CCNA_01668 | | sulfate transport system permease protein cysT | low | > 67 |
| Azospirillum brasilense Sp245 | 0.14 | AZOBR_RS01195 | | RNA methyltransferase | 0.41 | AZOBR_RS19270 | | sulfate transporter | low | > 97 |
| Rhizobium sp. OAE497 | 0.13 | ABIE40_RS03880 | | class I SAM-dependent RNA methyltransferase | 0.43 | ABIE40_RS24585 | | sulfate ABC transporter permease subunit CysT | low | > 107 |
| Agrobacterium fabrum C58 | 0.13 | Atu0735 | | RNA methyltransferase | 0.53 | Atu3503 | | ABC transporter permease | low | > 89 |
| Azospirillum sp. SherDot2 | 0.13 | MPMX19_02196 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.45 | MPMX19_04167 | | Sulfate transport system permease protein CysT | low | > 112 |
| Rhodospirillum rubrum S1H | 0.12 | Rru_A2107 | | 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) | 0.44 | Rru_A3401 | | sulfate ABC transporter, permease protein CysT (NCBI) | — | — |
Not shown: 22 genomes with orthologs for EX31_RS07960 only; 3 genomes with orthologs for EX31_RS20220 only