Conservation of cofitness between ECD_04037 and ECD_04046 in Escherichia coli BL21

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_04037 methyl-directed mismatch repair protein 1.0 ECD_04046 exoribonuclease R, RNase R 0.39 29
Escherichia coli BW25113 1.00 b4170 mutL DNA mismatch repair protein (NCBI) 1.00 b4179 vacB putative enzyme (VIMSS) low > 76
Escherichia coli ECOR27 1.00 NOLOHH_04530 mutL DNA mismatch repair endonuclease MutL 1.00 NOLOHH_04485 rnr ribonuclease R low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03872 DNA mismatch repair protein MutL 1.00 OHPLBJKB_03863 Ribonuclease R low > 73
Escherichia coli ECRC62 1.00 BNILDI_06960 mutL DNA mismatch repair endonuclease MutL 1.00 BNILDI_07005 rnr ribonuclease R low > 75
Escherichia coli ECOR38 0.99 HEPCGN_10495 mutL DNA mismatch repair endonuclease MutL 1.00 HEPCGN_10450 rnr ribonuclease R low > 87
Escherichia coli ECRC98 0.99 JDDGAC_15905 mutL DNA mismatch repair endonuclease MutL 1.00 JDDGAC_15860 rnr ribonuclease R low > 86
Escherichia coli ECRC100 0.99 OKFHMN_12265 mutL DNA mismatch repair endonuclease MutL 0.99 OKFHMN_12220 rnr ribonuclease R low > 80
Escherichia coli ECRC99 0.99 KEDOAH_15890 mutL DNA mismatch repair endonuclease MutL 1.00 KEDOAH_15935 rnr ribonuclease R — —
Escherichia coli ECRC101 0.99 MCAODC_02780 mutL DNA mismatch repair endonuclease MutL 1.00 MCAODC_02735 rnr ribonuclease R low > 87
Escherichia coli Nissle 1917 0.99 ECOLIN_RS24220 DNA mismatch repair endonuclease MutL 0.99 ECOLIN_RS24265 ribonuclease R 0.39 41
Escherichia coli ECRC102 0.99 NIAGMN_10115 mutL DNA mismatch repair endonuclease MutL 1.00 NIAGMN_10070 rnr ribonuclease R — —
Escherichia fergusonii Becca 0.99 EFB2_04365 DNA mismatch repair protein MutL 0.99 EFB2_04356 Ribonuclease R low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF823 DNA mismatch repair protein MutL 0.93 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 low > 78
Klebsiella michiganensis M5al 0.83 BWI76_RS02525 DNA mismatch repair protein MutL 0.91 BWI76_RS02575 exoribonuclease R low > 92
Enterobacter sp. TBS_079 0.81 MPMX20_00451 DNA mismatch repair protein MutL 0.90 MPMX20_00460 Ribonuclease R low > 85
Enterobacter asburiae PDN3 0.80 EX28DRAFT_3367 DNA mismatch repair protein MutL 0.91 EX28DRAFT_3376 ribonuclease R low > 76
Pantoea sp. MT58 0.67 IAI47_02580 DNA mismatch repair endonuclease MutL 0.78 IAI47_02625 ribonuclease R low > 76
Serratia liquefaciens MT49 0.67 IAI46_01615 DNA mismatch repair endonuclease MutL 0.76 IAI46_01660 ribonuclease R low > 86
Erwinia tracheiphila SCR3 0.65 LU632_RS02045 mutL DNA mismatch repair endonuclease MutL 0.79 LU632_RS21750 rnr ribonuclease R low > 74
Rahnella sp. WP5 0.65 EX31_RS08830 DNA mismatch repair endonuclease MutL 0.77 EX31_RS08785 ribonuclease R low > 89
Pectobacterium carotovorum WPP14 0.64 HER17_RS02575 DNA mismatch repair endonuclease MutL 0.76 HER17_RS03835 ribonuclease R low > 75
Dickeya dadantii 3937 0.62 DDA3937_RS18620 DNA mismatch repair endonuclease MutL 0.76 DDA3937_RS17260 ribonuclease R low > 74
Dickeya dianthicola ME23 0.61 DZA65_RS19690 DNA mismatch repair endonuclease MutL 0.75 DZA65_RS18405 ribonuclease R 0.46 23
Dickeya dianthicola 67-19 0.61 HGI48_RS18555 DNA mismatch repair endonuclease MutL 0.75 HGI48_RS17315 ribonuclease R low > 71
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_01825 DNA mismatch repair protein MutL 0.63 CSW01_13155 ribonuclease R low > 62
Shewanella amazonensis SB2B 0.39 Sama_3027 mutL DNA mismatch repair protein (RefSeq) 0.53 Sama_3067 exoribonuclease II (RefSeq) low > 62
Shewanella oneidensis MR-1 0.39 SO0601 mutL DNA mismatch repair protein MutL (NCBI ptt file) 0.56 SO3935 vacB ribonuclease R (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.38 Shew_0564 DNA mismatch repair protein MutL (RefSeq) 0.57 Shew_3289 ribonuclease R (RefSeq) low > 60
Shewanella sp. ANA-3 0.38 Shewana3_0595 mutL DNA mismatch repair protein (RefSeq) 0.56 Shewana3_0697 RNAse R (RefSeq) low > 73
Pseudomonas stutzeri RCH2 0.36 Psest_0681 DNA mismatch repair protein MutL 0.49 Psest_0691 ribonuclease R low > 67
Pseudomonas sp. S08-1 0.36 OH686_09480 DNA mismatch repair protein MutL 0.49 OH686_15910 ribonuclease R low > 80
Marinobacter adhaerens HP15 0.35 HP15_2501 DNA mismatch repair protein mutL 0.45 HP15_622 exoribonuclease R low > 73
Pseudomonas putida KT2440 0.35 PP_4896 DNA mismatch repair protein MutL 0.48 PP_4880 exoribonuclease R 0.24 96
Pseudomonas simiae WCS417 0.35 PS417_02480 DNA mismatch repair protein 0.49 PS417_02555 exoribonuclease R 0.26 37
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS02560 DNA mismatch repair endonuclease MutL 0.49 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS02560 DNA mismatch repair endonuclease MutL 0.49 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_3616 DNA mismatch repair protein MutL 0.50 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R low > 103
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_0570 DNA mismatch repair protein MutL 0.49 Psyr_0579 RNAse R low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_0570 DNA mismatch repair protein MutL 0.49 Psyr_0579 RNAse R low > 86
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_156 DNA mismatch repair protein MutL 0.49 PfGW456L13_144 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_08665 DNA mismatch repair protein 0.50 AO356_08610 exoribonuclease R low > 104
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_1414 DNA mismatch repair protein MutL 0.49 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas sp. RS175 0.34 PFR28_05119 DNA mismatch repair protein MutL 0.49 PFR28_05130 Ribonuclease R low > 88
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_13135 DNA mismatch repair protein 0.49 AO353_13200 exoribonuclease R low > 101
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.2256.1 DNA mismatch repair protein MutL 0.41 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R low > 74
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS00855 DNA mismatch repair endonuclease MutL 0.41 ABZR86_RS08270 ribonuclease R low > 74
Rhodanobacter denitrificans MT42 0.30 LRK55_RS14865 DNA mismatch repair endonuclease MutL 0.42 LRK55_RS00235 ribonuclease R low > 63
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS15150 DNA mismatch repair endonuclease MutL 0.42 LRK54_RS00495 ribonuclease R low > 59
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_03920 mutL DNA mismatch repair endonuclease MutL 0.42 OKGIIK_06755 rnr ribonuclease R low > 52
Ralstonia solanacearum UW163 0.28 UW163_RS08395 DNA mismatch repair endonuclease MutL 0.42 UW163_RS12810 ribonuclease R — —
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS05230 DNA mismatch repair endonuclease MutL 0.42 RALBFv3_RS15345 ribonuclease R low > 76
Herbaspirillum seropedicae SmR1 0.28 HSERO_RS04190 DNA mismatch repair protein 0.40 HSERO_RS09290 ribonuclease R low > 78
Ralstonia solanacearum GMI1000 0.28 RS_RS12850 DNA mismatch repair protein MutL 0.42 RS_RS06155 ribonuclease R low > 80
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS00870 DNA mismatch repair endonuclease MutL 0.42 ABZR87_RS10985 ribonuclease R low > 80
Dechlorosoma suillum PS 0.27 Dsui_1551 DNA mismatch repair protein MutL 0.44 Dsui_3128 ribonuclease R low > 51
Ralstonia solanacearum PSI07 0.27 RPSI07_RS12070 DNA mismatch repair endonuclease MutL 0.43 RPSI07_RS18030 ribonuclease R low > 81
Cupriavidus basilensis FW507-4G11 0.27 RR42_RS17205 DNA mismatch repair protein 0.43 RR42_RS13065 ribonuclease R low > 128
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS26435 DNA mismatch repair endonuclease MutL 0.41 QEN71_RS22925 ribonuclease R low > 153
Acinetobacter radioresistens SK82 0.25 MPMX26_01207 DNA mismatch repair protein MutL 0.36 MPMX26_02684 Ribonuclease R low > 36
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_04712 DNA mismatch repair protein MutL 0.41 H281DRAFT_00712 RNAse R low > 103
Castellaniella sp019104865 MT123 0.25 ABCV34_RS08785 DNA mismatch repair endonuclease MutL 0.38 ABCV34_RS06625 ribonuclease R low > 48
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS03650 DNA mismatch repair protein 0.41 BPHYT_RS08455 ribonuclease R low > 109
Magnetospirillum magneticum AMB-1 0.24 AMB_RS22340 DNA mismatch repair protein MutL 0.24 AMB_RS04465 ribonuclease R low > 64
Azospirillum brasilense Sp245 0.22 AZOBR_RS05025 DNA mismatch repair protein MutL 0.25 AZOBR_RS16165 ribonuclease R low > 97
Azospirillum sp. SherDot2 0.22 MPMX19_01619 DNA mismatch repair protein MutL 0.23 MPMX19_01812 Ribonuclease R low > 112
Rhodospirillum rubrum S1H 0.22 Rru_A2946 DNA mismatch repair protein (NCBI) 0.23 Rru_A3203 ribonuclease R (NCBI) low > 58
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS04225 DNA mismatch repair endonuclease MutL 0.23 A4249_RS08325 ribonuclease R low > 48
Phaeobacter inhibens DSM 17395 0.21 PGA1_c32740 DNA mismatch repair protein MutL 0.23 PGA1_c36430 putative ribonuclease R low > 62
Sphingomonas koreensis DSMZ 15582 0.20 Ga0059261_0371 DNA mismatch repair protein MutL 0.21 Ga0059261_3266 ribonuclease R low > 68
Pontibacter actiniarum KMM 6156, DSM 19842 0.20 CA264_13305 DNA mismatch repair protein MutL 0.23 CA264_17355 ribonuclease R — —
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS07405 DNA mismatch repair endonuclease MutL 0.21 HMPREF1181_RS01550 ribonuclease R — —

Not shown: 8 genomes with orthologs for ECD_04037 only; 13 genomes with orthologs for ECD_04046 only