| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | 1.0 | ECD_03089 | | stringent starvation protein A, phage P1 late gene activator, RNAP-associated acid-resistance protein, inactive glutathione S-transferase-like protein | 0.59 | 3 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | OHPLBJKB_00475 | | Stringent starvation protein A | low | > 73 |
| Escherichia coli BW25113 | 1.00 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | 1.00 | b3229 | sspA | stringent starvation protein A (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.99 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | BNILDI_01905 | sspA | stringent starvation protein A | low | > 75 |
| Escherichia coli ECOR27 | 0.99 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | NOLOHH_09630 | sspA | stringent starvation protein A | low | > 75 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | ECOLIN_RS18520 | | stringent starvation protein SspA | low | > 55 |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | NIAGMN_15590 | sspA | stringent starvation protein A | — | — |
| Escherichia coli ECRC101 | 0.99 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | MCAODC_08350 | sspA | stringent starvation protein A | low | > 87 |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | JDDGAC_21455 | sspA | stringent starvation protein A | low | > 86 |
| Escherichia coli ECRC100 | 0.99 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | OKFHMN_17830 | sspA | stringent starvation protein A | low | > 80 |
| Escherichia coli ECRC99 | 0.99 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | KEDOAH_10320 | sspA | stringent starvation protein A | — | — |
| Escherichia coli ECOR38 | 0.98 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | HEPCGN_16705 | sspA | stringent starvation protein A | low | > 87 |
| Escherichia fergusonii Becca | 0.98 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | EFB2_00601 | | Stringent starvation protein A | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.85 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.98 | GFF2968 | | Stringent starvation protein A | low | > 78 |
| Enterobacter asburiae PDN3 | 0.80 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.96 | EX28DRAFT_3278 | | Glutathione S-transferase | low | > 76 |
| Enterobacter sp. TBS_079 | 0.80 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.96 | MPMX20_04133 | | Stringent starvation protein A | low | > 85 |
| Klebsiella michiganensis M5al | 0.79 | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | 0.93 | BWI76_RS25335 | | stringent starvation protein A | low | > 92 |
| Dickeya dianthicola ME23 | 0.66 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.85 | DZA65_RS01615 | | stringent starvation protein A | low | > 75 |
| Dickeya dianthicola 67-19 | 0.66 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.85 | HGI48_RS01545 | | stringent starvation protein A | low | > 71 |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.84 | DDA3937_RS01645 | | stringent starvation protein A | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.64 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.84 | HER17_RS19935 | | stringent starvation protein A | low | > 75 |
| Pantoea sp. MT58 | 0.64 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.83 | IAI47_17235 | | stringent starvation protein A | low | > 76 |
| Serratia liquefaciens MT49 | 0.63 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.84 | IAI46_22365 | | stringent starvation protein A | low | > 86 |
| Rahnella sp. WP5 | 0.62 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.84 | EX31_RS12500 | | stringent starvation protein A | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.59 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.85 | LU632_RS21330 | sspA | stringent starvation protein A | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.46 | CSW01_12410 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.74 | CSW01_03060 | | stringent starvation protein A | — | — |
| Shewanella amazonensis SB2B | 0.45 | Sama_1032 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.70 | Sama_3018 | sspA | stringent starvation protein A (RefSeq) | 0.42 | 24 |
| Shewanella loihica PV-4 | 0.44 | Shew_1201 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.70 | Shew_0573 | sspA | stringent starvation protein A (RefSeq) | — | — |
| Shewanella sp. ANA-3 | 0.43 | Shewana3_1110 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.70 | Shewana3_0604 | sspA | stringent starvation protein A (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.43 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | 0.69 | SO0611 | sspA | stringent starvation protein a (NCBI ptt file) | low | > 76 |
| Kangiella aquimarina DSM 16071 | 0.37 | B158DRAFT_2275 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.66 | B158DRAFT_2103 | | Glutathione S-transferase | low | > 40 |
| Marinobacter adhaerens HP15 | 0.36 | HP15_790 | | 23S rRNA 5-methyluridine methyltransferase | 0.59 | HP15_548 | | glutathione S-transferase, N-terminal domain protein | — | — |
| Pseudomonas stutzeri RCH2 | 0.36 | Psest_1639 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.51 | Psest_3276 | | Glutathione S-transferase | — | — |
| Lysobacter sp. OAE881 | 0.36 | ABIE51_RS13830 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.46 | ABIE51_RS15425 | | glutathione S-transferase N-terminal domain-containing protein | 0.36 | 21 |
| Dyella japonica UNC79MFTsu3.2 | 0.35 | ABZR86_RS07120 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.45 | ABZR86_RS09865 | | glutathione S-transferase N-terminal domain-containing protein | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.35 | Xcc-8004.3669.1 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.46 | Xcc-8004.2231.1 | | Stringent starvation protein A | low | > 74 |
| Castellaniella sp019104865 MT123 | 0.35 | ABCV34_RS03050 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.38 | ABCV34_RS12620 | | glutathione S-transferase N-terminal domain-containing protein | — | — |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS16715 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.46 | LRK55_RS13495 | | glutathione S-transferase N-terminal domain-containing protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.35 | LRK54_RS17000 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.46 | LRK54_RS13780 | | glutathione S-transferase N-terminal domain-containing protein | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.34 | OKGIIK_07840 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.46 | OKGIIK_03020 | gstA | stringent starvation protein A | low | > 52 |
| Acinetobacter radioresistens SK82 | 0.34 | MPMX26_00538 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.33 | MPMX26_00591 | | Stringent starvation protein A | low | > 36 |
| Pseudomonas simiae WCS417 | 0.34 | PS417_20155 | | 23S rRNA methyltransferase | 0.54 | PS417_04170 | | stringent starvation protein A | low | > 88 |
| Pseudomonas sp. S08-1 | 0.33 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.54 | OH686_08375 | | Stringent starvation protein A | 0.78 | 16 |
| Pseudomonas fluorescens SBW25-INTG | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.53 | PFLU_RS04210 | | stringent starvation protein A | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.53 | PFLU_RS04210 | | stringent starvation protein A | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.32 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.52 | Psyr_4118 | | Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.32 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.52 | Psyr_4118 | | Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal | low | > 86 |
| Pseudomonas sp. RS175 | 0.32 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | PFR28_03603 | | Stringent starvation protein A | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.32 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.54 | Pf1N1B4_959 | | Stringent starvation protein A | low | > 87 |
| Dechlorosoma suillum PS | 0.32 | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.40 | Dsui_1815 | | glutathione S-transferase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_19055 | | 23S rRNA methyltransferase | 0.53 | AO356_17080 | | stringent starvation protein A | 0.26 | 63 |
| Acidovorax sp. GW101-3H11 | 0.31 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.40 | Ac3H11_4753 | | Stringent starvation protein A | — | — |
| Ralstonia sp. UNC404CL21Col | 0.31 | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.40 | ABZR87_RS02370 | | glutathione S-transferase N-terminal domain-containing protein | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.53 | Pf6N2E2_5340 | | Stringent starvation protein A | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.31 | HSERO_RS14825 | | 23S rRNA methyltransferase | 0.40 | HSERO_RS20230 | | glutathione S-transferase | — | — |
| Burkholderia phytofirmans PsJN | 0.31 | BPHYT_RS09125 | | 23S rRNA methyltransferase | 0.39 | BPHYT_RS17615 | | Glutathione S-transferase domain | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.31 | RR42_RS13170 | | 23S rRNA methyltransferase | 0.40 | RR42_RS18810 | | stringent starvation protein A | — | — |
| Alteromonas macleodii MIT1002 | 0.31 | MIT1002_00793 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.68 | MIT1002_00817 | | Stringent starvation protein A | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.31 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | 0.39 | H281DRAFT_05672 | | RNA polymerase-associated protein | — | — |
| Ralstonia solanacearum GMI1000 | 0.31 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.40 | RS_RS14660 | | transcription modulator protein | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.30 | AO353_02715 | | 23S rRNA methyltransferase | 0.53 | AO353_15260 | | stringent starvation protein A | low | > 101 |
| Pseudomonas putida KT2440 | 0.30 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.51 | PP_1320 | | stringent starvation protein A | low | > 96 |
| Ralstonia solanacearum IBSBF1503 | 0.30 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.40 | RALBFv3_RS06715 | | stringent starvation protein A | — | — |
| Ralstonia solanacearum UW163 | 0.30 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.40 | UW163_RS06900 | | stringent starvation protein A | — | — |
| Ralstonia solanacearum PSI07 | 0.30 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.40 | RPSI07_RS10520 | | transcription modulator protein | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.30 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.54 | PfGW456L13_1637 | | Stringent starvation protein A | low | > 87 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.30 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.39 | GFF1292 | | Stringent starvation protein A | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.29 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.39 | QEN71_RS27770 | | glutathione S-transferase N-terminal domain-containing protein | — | — |
| Variovorax sp. SCN45 | 0.28 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | 0.40 | GFF6697 | | Stringent starvation protein A | — | — |
| Azospirillum sp. SherDot2 | 0.16 | MPMX19_02196 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.13 | MPMX19_00253 | | FtsZ-localized protein A | low | > 112 |
| Sphingomonas koreensis DSMZ 15582 | 0.14 | Ga0059261_0648 | | SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase | 0.14 | Ga0059261_1536 | | Glutathione S-transferase | low | > 68 |
| Bosea sp. OAE506 | 0.14 | ABIE41_RS22255 | | RNA methyltransferase | 0.17 | ABIE41_RS13585 | | glutathione S-transferase family protein | low | > 77 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.13 | A4249_RS08425 | | class I SAM-dependent RNA methyltransferase | 0.13 | A4249_RS03640 | | glutathione S-transferase family protein | low | > 48 |
| Rhodospirillum rubrum S1H | 0.12 | Rru_A2107 | | 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) | 0.12 | Rru_A3193 | | Glutathione S-transferase-like (NCBI) | — | — |
Not shown: 23 genomes with orthologs for ECD_02630 only; 2 genomes with orthologs for ECD_03089 only