| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_02179 | | uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent | 1.0 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.68 | 30 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_01458 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | 1.00 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | low | > 73 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_13535 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 1.00 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Escherichia coli ECOR27 | 0.99 | NOLOHH_14620 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 1.00 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Escherichia coli ECOR38 | 0.99 | HEPCGN_22210 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 1.00 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.67 | 17 |
| Escherichia coli BW25113 | 0.99 | b2253 | arnB | uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent (RefSeq) | 1.00 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | — | — |
| Escherichia coli Nissle 1917 | 0.97 | ECOLIN_RS13125 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 1.00 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 55 |
| Escherichia coli ECRC99 | 0.95 | KEDOAH_05200 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 1.00 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC100 | 0.95 | OKFHMN_22995 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 1.00 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 80 |
| Escherichia coli ECRC101 | 0.95 | MCAODC_14035 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 1.00 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 87 |
| Escherichia coli ECRC98 | 0.95 | JDDGAC_26960 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 1.00 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 86 |
| Escherichia coli ECRC102 | 0.95 | NIAGMN_20765 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 1.00 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia fergusonii Becca | 0.95 | EFB2_01603 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | 1.00 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.84 | GFF1858 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-) | 0.95 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.81 | MPMX20_04380 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | 0.93 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | low | > 85 |
| Enterobacter asburiae PDN3 | 0.81 | EX28DRAFT_4082 | | Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis | 0.94 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | low | > 76 |
| Klebsiella michiganensis M5al | 0.79 | BWI76_RS26485 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | 0.93 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | low | > 92 |
| Erwinia tracheiphila SCR3 | 0.78 | LU632_RS16495 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.85 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Dickeya dadantii 3937 | 0.78 | DDA3937_RS21390 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.87 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Dickeya dianthicola ME23 | 0.77 | DZA65_RS22610 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.85 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Dickeya dianthicola 67-19 | 0.77 | HGI48_RS21625 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.85 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.72 | HER17_RS06520 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.85 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Pantoea sp. MT58 | 0.71 | IAI47_21625 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.87 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 76 |
| Serratia liquefaciens MT49 | 0.71 | IAI46_11015 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.88 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 86 |
| Rahnella sp. WP5 | 0.70 | EX31_RS14020 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.83 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 89 |
| Pseudomonas fluorescens FW300-N2E3 | 0.69 | AO353_25530 | | UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase | 0.54 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.63 | Psyr_2689 | | DegT/DnrJ/EryC1/StrS aminotransferase | 0.53 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.63 | Psyr_2689 | | DegT/DnrJ/EryC1/StrS aminotransferase | 0.53 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Variovorax sp. OAS795 | 0.40 | ABID97_RS02145 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.29 | ABID97_RS14190 | | RluA family pseudouridine synthase | low | > 91 |
| Rhodanobacter sp. FW510-T8 | 0.35 | OKGIIK_10755 | | UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase | 0.49 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 52 |
| Herbaspirillum seropedicae SmR1 | 0.32 | HSERO_RS10435 | | aminotransferase DegT | 0.37 | HSERO_RS15070 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Ralstonia solanacearum PSI07 | 0.32 | RPSI07_RS17515 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | 0.41 | RPSI07_RS15970 | | RluA family pseudouridine synthase | — | — |
| Rhodospirillum rubrum S1H | 0.31 | Rru_A2746 | | DegT/DnrJ/EryC1/StrS aminotransferase (NCBI) | 0.33 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | low | > 58 |
| Pseudomonas simiae WCS417 | 0.31 | PS417_27245 | | aminotransferase DegT | 0.54 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.31 | RALBFv3_RS15850 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | 0.40 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.31 | PFLU_RS28905 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | 0.54 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Ralstonia solanacearum UW163 | 0.31 | UW163_RS13295 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | 0.40 | UW163_RS14830 | | RluA family pseudouridine synthase | — | — |
| Pseudomonas fluorescens SBW25 | 0.31 | PFLU_RS28905 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | 0.54 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.30 | RS_RS06630 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | 0.41 | RS_RS08205 | | RluA family pseudouridine synthase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.30 | CCNA_00234 | | WecE-family cell wall biogenesis enzyme | 0.30 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 67 |
| Caulobacter crescentus NA1000 | 0.30 | CCNA_00234 | | WecE-family cell wall biogenesis enzyme | 0.30 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 66 |
| Ralstonia sp. UNC404CL21Col | 0.30 | ABZR87_RS11420 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | 0.40 | ABZR87_RS13315 | | RluA family pseudouridine synthase | low | > 80 |
| Magnetospirillum magneticum AMB-1 | 0.30 | AMB_RS00560 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.31 | AMB_RS16095 | | RluA family pseudouridine synthase | — | — |
| Pseudomonas stutzeri RCH2 | 0.29 | Psest_1811 | | UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | 0.53 | Psest_0709 | | pseudouridine synthase, RluA family | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.29 | Pf1N1B4_3586 | | DegT/DnrJ/EryC1/StrS aminotransferase | 0.53 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas sp. RS175 | 0.29 | PFR28_00919 | | UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase | 0.53 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | — | — |
| Marinobacter adhaerens HP15 | 0.28 | HP15_2398 | | aminotransferase, DegT/DnrJ/EryC1/StrS family | 0.52 | HP15_527 | | pseudouridine synthase, RluA family | — | — |
| Methanococcus maripaludis S2 | 0.28 | MMP_RS01880 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.23 | MMP_RS05225 | | RluA family pseudouridine synthase | low | > 25 |
| Shewanella sp. ANA-3 | 0.27 | Shewana3_1303 | | polysaccharide biosynthesis protein (RefSeq) | 0.66 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | low | > 73 |
| Pseudomonas fluorescens FW300-N2E2 | 0.27 | Pf6N2E2_2610 | | Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase | 0.54 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Synechococcus elongatus PCC 7942 | 0.27 | Synpcc7942_0071 | degT | pleiotropic regulatory protein-like | 0.32 | Synpcc7942_1112 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.26 | PfGW456L13_4370 | | Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase | 0.53 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Fusobacterium nucleatum SB010 | 0.26 | HUW76_01355 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.31 | HUW76_08575 | | RluA family pseudouridine synthase | low | > 35 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.26 | CA264_07955 | | UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase | 0.28 | CA264_15205 | | RNA pseudouridine synthase | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.25 | MIT1002_01078 | | UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase | 0.63 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | low | > 70 |
| Shewanella loihica PV-4 | 0.25 | Shew_1319 | | DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq) | 0.64 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Pseudomonas fluorescens FW300-N2C3 | 0.24 | AO356_03400 | | aminotransferase DegT | 0.54 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | low | > 104 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.24 | CA265_RS01760 | | aminotransferase DegT | 0.27 | CA265_RS14415 | | pseudouridine synthase | low | > 88 |
| Phaeobacter inhibens DSM 17395 | 0.23 | PGA1_c05070 | | putative pyridoxal-phosphate-dependent aminotransferase | 0.33 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | low | > 62 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.23 | BT0612 | | putative aminotransferase (NCBI ptt file) | 0.30 | BT3712 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | low | > 81 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.23 | ABZR88_RS08945 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | 0.28 | ABZR88_RS03985 | | RluA family pseudouridine synthase | low | > 71 |
| Variovorax sp. SCN45 | 0.22 | GFF6876 | | Aminotransferase, DegT/DnrJ/EryC1/StrS family | 0.31 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | low | > 127 |
| Sphingomonas koreensis DSMZ 15582 | 0.22 | Ga0059261_3110 | | Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis | 0.35 | Ga0059261_0664 | | pseudouridine synthase, RluA family | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.21 | Xcc-8004.4490.1 | | Lipopolysaccharide biosynthesis protein RffA | 0.52 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.21 | ABZR86_RS18520 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.51 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Rhodopseudomonas palustris CGA009 | 0.20 | TX73_020615 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.34 | TX73_001905 | | RluA family pseudouridine synthase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.20 | LRK54_RS05160 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.51 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 59 |
| Phocaeicola dorei CL03T12C01 | 0.20 | ABI39_RS13755 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | 0.30 | ABI39_RS02845 | | RluA family pseudouridine synthase | low | > 72 |
| Rhodanobacter denitrificans MT42 | 0.20 | LRK55_RS04940 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.51 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 63 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.20 | Echvi_3862 | | Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis | 0.30 | Echvi_0642 | | pseudouridine synthase, RluA family | low | > 79 |
| Acinetobacter radioresistens SK82 | 0.19 | MPMX26_00061 | | GDP-perosamine synthase | 0.44 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | low | > 36 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.19 | A4249_RS13795 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | 0.26 | A4249_RS10060 | | RluA family pseudouridine synthase | — | — |
| Acidovorax sp. GW101-3H11 | 0.19 | Ac3H11_1545 | | Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase | 0.32 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 79 |
| Sinorhizobium meliloti 1021 | 0.18 | SM_b21248 | | aminotransferase | 0.31 | SMc00647 | | ribosomal large subunit pseudouridine synthase | low | > 103 |
| Bacteroides ovatus ATCC 8483 | 0.17 | BACOVA_03734 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | 0.30 | BACOVA_03528 | | pseudouridine synthase, RluA family | low | > 94 |
| Bacteroides stercoris CC31F | 0.16 | HMPREF1181_RS14960 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | 0.29 | HMPREF1181_RS03250 | | RluA family pseudouridine synthase | low | > 56 |
| Dinoroseobacter shibae DFL-12 | 0.14 | Dshi_2228 | | DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq) | 0.27 | Dshi_2610 | | pseudouridine synthase, RluA family (RefSeq) | low | > 64 |
Not shown: 10 genomes with orthologs for ECD_02179 only; 17 genomes with orthologs for ECD_02484 only