Conservation of cofitness between ECD_01164 and ECD_00443 in Escherichia coli BL21

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01164 D-amino acid dehydrogenase 1.0 ECD_00443 DnaK co-chaperone, thioredoxin-like protein 0.80 10
Escherichia coli ECRC98 1.00 JDDGAC_06220 dadA D-amino acid dehydrogenase 1.00 JDDGAC_11630 cnoX chaperedoxin — —
Escherichia coli ECRC101 1.00 OKFHMN_28290 dadA D-amino acid dehydrogenase 1.00 OKFHMN_07985 cnoX chaperedoxin — —
Escherichia coli ECOR38 1.00 HEPCGN_24750 dadA D-amino acid dehydrogenase 1.00 HEPCGN_06615 cnoX chaperedoxin low > 85
Escherichia coli BW25113 1.00 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) 1.00 b0492 ybbN putative thioredoxin-like protein (VIMSS) low > 76
Escherichia coli ECRC99 1.00 KEDOAH_25305 dadA D-amino acid dehydrogenase 1.00 KEDOAH_19985 cnoX chaperedoxin — —
Escherichia fergusonii Becca 1.00 EFB2_02743 D-amino acid dehydrogenase 1.00 EFB2_03563 Chaperedoxin low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS07185 D-amino acid dehydrogenase 0.99 ECOLIN_RS02910 chaperedoxin — —
Escherichia coli ECOR27 1.00 NOLOHH_20725 dadA D-amino acid dehydrogenase 1.00 NOLOHH_00975 cnoX chaperedoxin low > 57
Escherichia coli ECRC101 1.00 MCAODC_21880 dadA D-amino acid dehydrogenase 1.00 MCAODC_27200 cnoX chaperedoxin — —
Escherichia coli ECRC62 1.00 BNILDI_18890 dadA D-amino acid dehydrogenase 0.99 BNILDI_22395 cnoX chaperedoxin — —
Escherichia coli ECRC102 1.00 NIAGMN_27930 dadA D-amino acid dehydrogenase 1.00 NIAGMN_06035 cnoX chaperedoxin — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02500 D-amino acid dehydrogenase 1.00 OHPLBJKB_03182 putative protein YbbN low > 73
Enterobacter asburiae PDN3 0.91 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) 0.91 EX28DRAFT_2467 Thioredoxin domain-containing protein low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.95 GFF4410 FIG000875: Thioredoxin domain-containing protein EC-YbbN low > 78
Enterobacter sp. TBS_079 0.90 MPMX20_02699 D-amino acid dehydrogenase 0.88 MPMX20_01090 Chaperedoxin low > 85
Klebsiella michiganensis M5al 0.90 BWI76_RS17735 D-amino acid dehydrogenase small subunit 0.81 BWI76_RS06935 co-chaperone YbbN low > 92
Serratia liquefaciens MT49 0.82 IAI46_14460 D-amino acid dehydrogenase 0.75 IAI46_05335 co-chaperone YbbN low > 86
Pantoea sp. MT58 0.80 IAI47_08890 D-amino acid dehydrogenase 0.79 IAI47_14380 co-chaperone YbbN low > 76
Rahnella sp. WP5 0.79 EX31_RS10485 D-amino acid dehydrogenase 0.74 EX31_RS22595 co-chaperone YbbN low > 89
Pectobacterium carotovorum WPP14 0.73 HER17_RS11170 D-amino acid dehydrogenase 0.73 HER17_RS15510 co-chaperone YbbN low > 75
Erwinia tracheiphila SCR3 0.72 LU632_RS13070 D-amino acid dehydrogenase 0.77 LU632_RS15275 co-chaperone YbbN low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS11195 D-amino acid dehydrogenase 0.71 HGI48_RS06000 co-chaperone YbbN low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS11540 D-amino acid dehydrogenase 0.73 DZA65_RS06345 co-chaperone YbbN low > 75
Dickeya dadantii 3937 0.71 DDA3937_RS11170 D-amino acid dehydrogenase 0.70 DDA3937_RS05950 co-chaperone YbbN low > 74
Paraburkholderia bryophila 376MFSha3.1 0.71 H281DRAFT_04287 D-amino-acid dehydrogenase 0.22 H281DRAFT_04133 thioredoxin low > 103
Paraburkholderia graminis OAS925 0.71 ABIE53_003133 D-amino-acid dehydrogenase 0.21 ABIE53_003370 putative thioredoxin low > 113
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS14790 D-amino acid dehydrogenase 0.21 BPHYT_RS15985 thioredoxin low > 109
Paraburkholderia sabiae LMG 24235 0.70 QEN71_RS04190 D-amino acid dehydrogenase 0.22 QEN71_RS02720 thioredoxin low > 153
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS13870 D-amino acid dehydrogenase small subunit 0.20 RALBFv3_RS13120 thioredoxin low > 76
Ralstonia solanacearum UW163 0.68 UW163_RS15940 D-amino acid dehydrogenase small subunit 0.20 UW163_RS00445 thioredoxin — —
Ralstonia solanacearum GMI1000 0.67 RS_RS04605 D-amino acid dehydrogenase small subunit 0.19 RS_RS03915 thioredoxin low > 80
Ralstonia solanacearum PSI07 0.67 RPSI07_RS19600 D-amino acid dehydrogenase small subunit 0.20 RPSI07_RS20095 thioredoxin 0.51 57
Ralstonia sp. UNC404CL21Col 0.67 ABZR87_RS09560 D-amino acid dehydrogenase 0.19 ABZR87_RS09195 thioredoxin 0.35 36
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS04585 amino acid dehydrogenase 0.18 RR42_RS15285 thioredoxin low > 128
Pseudomonas putida KT2440 0.62 PP_5270 D-amino-acid:quinone oxidoreductase (deaminating) 0.30 PP_0510 Thioredoxin low > 96
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2144 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.30 Pf1N1B4_2645 FIG000875: Thioredoxin domain-containing protein EC-YbbN low > 87
Pseudomonas sp. S08-1 0.62 OH686_13685 D-amino acid dehydrogenase 0.29 OH686_15675 thioredoxin low > 80
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_09155 amino acid dehydrogenase 0.31 AO353_06735 thioredoxin low > 101
Pseudomonas fluorescens SBW25 0.61 PFLU_RS29380 D-amino acid dehydrogenase 0.31 PFLU_RS26920 thioredoxin low > 109
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS29380 D-amino acid dehydrogenase 0.31 PFLU_RS26920 thioredoxin low > 109
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_0235 D-amino acid dehydrogenase small subunit 0.30 Psyr_4466 Thioredoxin low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_0235 D-amino acid dehydrogenase small subunit 0.30 Psyr_4466 Thioredoxin low > 86
Pseudomonas stutzeri RCH2 0.61 Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.30 Psest_3559 thioredoxin low > 67
Pseudomonas simiae WCS417 0.61 PS417_27705 amino acid dehydrogenase 0.30 PS417_25285 thioredoxin low > 88
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_812 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.30 PfGW456L13_1308 FIG000875: Thioredoxin domain-containing protein EC-YbbN low > 87
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_4391 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.29 Pf6N2E2_4915 FIG000875: Thioredoxin domain-containing protein EC-YbbN low > 103
Rhodanobacter denitrificans MT42 0.61 LRK55_RS00360 D-amino acid dehydrogenase 0.20 LRK55_RS02560 thioredoxin low > 63
Rhodanobacter denitrificans FW104-10B01 0.61 LRK54_RS00590 D-amino acid dehydrogenase 0.22 LRK54_RS02805 thioredoxin low > 59
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_12620 amino acid dehydrogenase 0.28 AO356_14910 thioredoxin low > 104
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_06665 dadA D-amino acid dehydrogenase small subunit 0.18 OKGIIK_09840 trxA thioredoxin low > 52
Pseudomonas sp. RS175 0.60 PFR28_04399 D-amino acid dehydrogenase 1 0.30 PFR28_03953 Chaperedoxin low > 88
Variovorax sp. SCN45 0.60 GFF1773 D-amino acid dehydrogenase (EC 1.4.99.6) 0.18 GFF5511 FIG000875: Thioredoxin domain-containing protein EC-YbbN low > 127
Variovorax sp. OAS795 0.59 ABID97_RS22385 D-amino acid dehydrogenase 0.18 ABID97_RS01710 tetratricopeptide repeat protein low > 91
Agrobacterium fabrum C58 0.56 Atu3293 D-amino acid dehydrogenase small subunit 0.24 Atu3698 thioredoxin low > 89
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.4621.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.22 Xcc-8004.1867.1 FIG000875: Thioredoxin domain-containing protein EC-YbbN low > 74
Azospirillum sp. SherDot2 0.54 MPMX19_06097 D-amino acid dehydrogenase 1 0.23 MPMX19_01906 Chaperedoxin low > 112
Azospirillum brasilense Sp245 0.54 AZOBR_RS08020 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.21 AZOBR_RS00145 thioredoxin low > 97
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_04065 D-amino acid dehydrogenase small subunit 0.43 CSW01_04995 co-chaperone YbbN 0.37 60
Brevundimonas sp. GW460-12-10-14-LB2 0.53 A4249_RS08770 D-amino acid dehydrogenase 0.18 A4249_RS14155 thioredoxin low > 48
Dinoroseobacter shibae DFL-12 0.49 Dshi_0558 D-amino-acid dehydrogenase (RefSeq) 0.19 Dshi_0035 Thioredoxin domain (RefSeq) low > 64
Magnetospirillum magneticum AMB-1 0.38 AMB_RS14080 D-amino-acid dehydrogenase 0.21 AMB_RS00045 thioredoxin — —
Marinobacter adhaerens HP15 0.38 HP15_2610 D-amino acid dehydrogenase small subunit 0.28 HP15_3051 thioredoxin domain-containing protein low > 73
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF1973 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.21 GFF2772 FIG000875: Thioredoxin domain-containing protein EC-YbbN low > 90
Rhodospirillum rubrum S1H 0.35 Rru_A1546 FAD dependent oxidoreductase (NCBI) 0.19 Rru_A3711 Thioredoxin-related (NCBI) — —
Acidovorax sp. GW101-3H11 0.34 Ac3H11_4848 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.20 Ac3H11_677 FIG000875: Thioredoxin domain-containing protein EC-YbbN low > 79
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_3351 Glycine/D-amino acid oxidases (deaminating) 0.21 Ga0059261_2170 Thioredoxin domain-containing protein low > 68
Dyella japonica UNC79MFTsu3.2 0.17 ABZR86_RS08930 FAD-dependent oxidoreductase 0.24 ABZR86_RS09135 thioredoxin — —
Sinorhizobium meliloti 1021 0.15 SMc03265 amino acid dehydrogenase transmembrane protein 0.19 SMc03801 thioredoxin protein low > 103
Shewanella amazonensis SB2B 0.14 Sama_1533 D-amino-acid dehydrogenase (RefSeq) 0.31 Sama_1314 putative thioredoxin-like protein (RefSeq) low > 62
Phaeobacter inhibens DSM 17395 0.13 PGA1_c05140 D-amino acid dehydrogenase small subunit 0.18 PGA1_c33230 thioredoxin-like protein low > 62
Bosea sp. OAE506 0.13 ABIE41_RS05730 FAD-dependent oxidoreductase 0.21 ABIE41_RS08290 thioredoxin low > 77
Rhizobium sp. OAE497 0.12 ABIE40_RS03380 FAD-binding oxidoreductase 0.22 ABIE40_RS18450 thioredoxin low > 107
Rhodopseudomonas palustris CGA009 0.12 TX73_019540 FAD-dependent oxidoreductase 0.21 TX73_001395 thioredoxin low > 86
Shewanella loihica PV-4 0.11 Shew_2360 D-hydroxyproline dehydrogenase (from data) 0.37 Shew_2231 thioredoxin domain-containing protein (RefSeq) low > 60

Not shown: 6 genomes with orthologs for ECD_01164 only; 6 genomes with orthologs for ECD_00443 only