Conservation of cofitness between ECD_04037 and ECD_00361 in Escherichia coli BL21

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_04037 methyl-directed mismatch repair protein 1.0 ECD_00361 Nrd regulon repressor 0.44 9
Escherichia coli BW25113 1.00 b4170 mutL DNA mismatch repair protein (NCBI) 1.00 b0413 ybaD hypothetical protein (NCBI) — —
Escherichia coli ECRC62 1.00 BNILDI_06960 mutL DNA mismatch repair endonuclease MutL 1.00 BNILDI_22820 nrdR transcriptional regulator NrdR — —
Escherichia coli ECOR27 1.00 NOLOHH_04530 mutL DNA mismatch repair endonuclease MutL 1.00 NOLOHH_01405 nrdR transcriptional regulator NrdR low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03872 DNA mismatch repair protein MutL 1.00 OHPLBJKB_03263 Transcriptional repressor NrdR low > 73
Escherichia coli ECOR38 0.99 HEPCGN_10495 mutL DNA mismatch repair endonuclease MutL 1.00 HEPCGN_07085 nrdR transcriptional regulator NrdR low > 87
Escherichia coli ECRC99 0.99 KEDOAH_15890 mutL DNA mismatch repair endonuclease MutL 1.00 KEDOAH_19505 nrdR transcriptional regulator NrdR — —
Escherichia coli ECRC101 0.99 MCAODC_02780 mutL DNA mismatch repair endonuclease MutL 1.00 MCAODC_27685 nrdR transcriptional regulator NrdR low > 87
Escherichia coli ECRC100 0.99 OKFHMN_12265 mutL DNA mismatch repair endonuclease MutL 1.00 OKFHMN_08460 nrdR transcriptional regulator NrdR low > 80
Escherichia coli ECRC98 0.99 JDDGAC_15905 mutL DNA mismatch repair endonuclease MutL 1.00 JDDGAC_12115 nrdR transcriptional regulator NrdR low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS24220 DNA mismatch repair endonuclease MutL 1.00 ECOLIN_RS02500 transcriptional regulator NrdR low > 55
Escherichia coli ECRC102 0.99 NIAGMN_10115 mutL DNA mismatch repair endonuclease MutL 1.00 NIAGMN_06515 nrdR transcriptional regulator NrdR — —
Escherichia fergusonii Becca 0.99 EFB2_04365 DNA mismatch repair protein MutL 1.00 EFB2_03644 Transcriptional repressor NrdR low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF823 DNA mismatch repair protein MutL 0.81 GFF4317 Ribonucleotide reductase transcriptional regulator NrdR low > 78
Klebsiella michiganensis M5al 0.83 BWI76_RS02525 DNA mismatch repair protein MutL 0.97 BWI76_RS06345 transcriptional regulator NrdR — —
Enterobacter sp. TBS_079 0.81 MPMX20_00451 DNA mismatch repair protein MutL 0.95 MPMX20_01005 Transcriptional repressor NrdR low > 85
Enterobacter asburiae PDN3 0.80 EX28DRAFT_3367 DNA mismatch repair protein MutL 0.95 EX28DRAFT_2557 transcriptional regulator NrdR — —
Pantoea sp. MT58 0.67 IAI47_02580 DNA mismatch repair endonuclease MutL 0.90 IAI47_14775 transcriptional regulator NrdR low > 76
Serratia liquefaciens MT49 0.67 IAI46_01615 DNA mismatch repair endonuclease MutL 0.91 IAI46_04890 transcriptional regulator NrdR low > 86
Erwinia tracheiphila SCR3 0.65 LU632_RS02045 mutL DNA mismatch repair endonuclease MutL 0.89 LU632_RS18590 nrdR transcriptional regulator NrdR low > 74
Rahnella sp. WP5 0.65 EX31_RS08830 DNA mismatch repair endonuclease MutL 0.90 EX31_RS22120 transcriptional regulator NrdR 0.55 15
Pectobacterium carotovorum WPP14 0.64 HER17_RS02575 DNA mismatch repair endonuclease MutL 0.92 HER17_RS15965 transcriptional regulator NrdR low > 75
Dickeya dadantii 3937 0.62 DDA3937_RS18620 DNA mismatch repair endonuclease MutL 0.93 DDA3937_RS05500 transcriptional regulator NrdR low > 74
Dickeya dianthicola 67-19 0.61 HGI48_RS18555 DNA mismatch repair endonuclease MutL 0.93 HGI48_RS05560 transcriptional regulator NrdR low > 71
Dickeya dianthicola ME23 0.61 DZA65_RS19690 DNA mismatch repair endonuclease MutL 0.93 DZA65_RS05885 transcriptional regulator NrdR low > 75
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_01825 DNA mismatch repair protein MutL 0.82 CSW01_11565 transcriptional regulator NrdR low > 62
Shewanella amazonensis SB2B 0.39 Sama_3027 mutL DNA mismatch repair protein (RefSeq) 0.77 Sama_1015 nrdR transcriptional regulator NrdR (RefSeq) low > 62
Shewanella oneidensis MR-1 0.39 SO0601 mutL DNA mismatch repair protein MutL (NCBI ptt file) 0.77 SO3470 conserved hypothetical protein TIGR00244 (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.38 Shew_0564 DNA mismatch repair protein MutL (RefSeq) 0.77 Shew_1186 transcriptional regulator NrdR (RefSeq) low > 60
Shewanella sp. ANA-3 0.38 Shewana3_0595 mutL DNA mismatch repair protein (RefSeq) 0.77 Shewana3_1095 nrdR transcriptional regulator NrdR (RefSeq) low > 73
Pseudomonas stutzeri RCH2 0.36 Psest_0681 DNA mismatch repair protein MutL 0.73 Psest_3553 transcriptional regulator NrdR — —
Pseudomonas sp. S08-1 0.36 OH686_09480 DNA mismatch repair protein MutL 0.73 OH686_15690 transcriptional regulator NrdR low > 80
Marinobacter adhaerens HP15 0.35 HP15_2501 DNA mismatch repair protein mutL 0.71 HP15_491 transcriptional repressor NrdR low > 73
Pseudomonas putida KT2440 0.35 PP_4896 DNA mismatch repair protein MutL 0.71 PP_0513 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP low > 96
Pseudomonas simiae WCS417 0.35 PS417_02480 DNA mismatch repair protein 0.71 PS417_25270 NrdR family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25 0.35 PFLU_RS02560 DNA mismatch repair endonuclease MutL 0.69 PFLU_RS26905 transcriptional regulator NrdR low > 109
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS02560 DNA mismatch repair endonuclease MutL 0.69 PFLU_RS26905 transcriptional regulator NrdR low > 109
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_0570 DNA mismatch repair protein MutL 0.71 Psyr_4463 Protein of unknown function DUF193 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_0570 DNA mismatch repair protein MutL 0.71 Psyr_4463 Protein of unknown function DUF193 low > 86
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_156 DNA mismatch repair protein MutL 0.70 PfGW456L13_1312 Ribonucleotide reductase transcriptional regulator NrdR low > 87
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_08665 DNA mismatch repair protein 0.71 AO356_14925 NrdR family transcriptional regulator — —
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_1414 DNA mismatch repair protein MutL 0.71 Pf1N1B4_2648 Ribonucleotide reductase transcriptional regulator NrdR — —
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_13135 DNA mismatch repair protein 0.71 AO353_06720 NrdR family transcriptional regulator low > 101
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.2256.1 DNA mismatch repair protein MutL 0.56 Xcc-8004.4397.1 Ribonucleotide reductase transcriptional regulator NrdR — —
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS00855 DNA mismatch repair endonuclease MutL 0.63 ABZR86_RS10710 transcriptional regulator NrdR low > 74
Rhodanobacter denitrificans MT42 0.30 LRK55_RS14865 DNA mismatch repair endonuclease MutL 0.61 LRK55_RS04390 transcriptional regulator NrdR low > 63
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS15150 DNA mismatch repair endonuclease MutL 0.61 LRK54_RS04615 transcriptional regulator NrdR low > 59
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_03920 mutL DNA mismatch repair endonuclease MutL 0.61 OKGIIK_11435 nrdR transcriptional regulator NrdR low > 52
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS05230 DNA mismatch repair endonuclease MutL 0.50 RALBFv3_RS12890 transcriptional regulator NrdR low > 76
Ralstonia solanacearum UW163 0.28 UW163_RS08395 DNA mismatch repair endonuclease MutL 0.50 UW163_RS00675 transcriptional regulator NrdR — —
Ralstonia solanacearum GMI1000 0.28 RS_RS12850 DNA mismatch repair protein MutL 0.50 RS_RS03665 transcriptional regulator NrdR low > 80
Herbaspirillum seropedicae SmR1 0.28 HSERO_RS04190 DNA mismatch repair protein 0.55 HSERO_RS06145 NrdR family transcriptional regulator low > 78
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS00870 DNA mismatch repair endonuclease MutL 0.50 ABZR87_RS08950 transcriptional regulator NrdR low > 80
Dechlorosoma suillum PS 0.27 Dsui_1551 DNA mismatch repair protein MutL 0.50 Dsui_1266 transcriptional regulator NrdR low > 51
Ralstonia solanacearum PSI07 0.27 RPSI07_RS12070 DNA mismatch repair endonuclease MutL 0.50 RPSI07_RS20335 transcriptional regulator NrdR low > 81
Cupriavidus basilensis FW507-4G11 0.27 RR42_RS17205 DNA mismatch repair protein 0.52 RR42_RS15490 NrdR family transcriptional regulator low > 128
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS26435 DNA mismatch repair endonuclease MutL 0.47 QEN71_RS26230 transcriptional regulator NrdR low > 153
Acinetobacter radioresistens SK82 0.25 MPMX26_01207 DNA mismatch repair protein MutL 0.59 MPMX26_00151 Transcriptional repressor NrdR low > 36
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_04712 DNA mismatch repair protein MutL 0.48 H281DRAFT_04727 transcriptional repressor NrdR low > 103
Acidovorax sp. GW101-3H11 0.25 Ac3H11_313 DNA mismatch repair protein MutL 0.41 Ac3H11_2922 Ribonucleotide reductase transcriptional regulator NrdR — —
Castellaniella sp019104865 MT123 0.25 ABCV34_RS08785 DNA mismatch repair endonuclease MutL 0.46 ABCV34_RS10550 transcriptional regulator NrdR low > 48
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS03650 DNA mismatch repair protein 0.47 BPHYT_RS03730 transcriptional repressor NrdR low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.24 GFF5485 DNA mismatch repair protein MutL 0.48 GFF5153 Ribonucleotide reductase transcriptional regulator NrdR low > 90
Variovorax sp. SCN45 0.24 GFF4800 DNA mismatch repair protein MutL 0.49 GFF561 Ribonucleotide reductase transcriptional regulator NrdR low > 127
Magnetospirillum magneticum AMB-1 0.24 AMB_RS22340 DNA mismatch repair protein MutL 0.45 AMB_RS10475 transcriptional regulator NrdR low > 64
Variovorax sp. OAS795 0.24 ABID97_RS20310 DNA mismatch repair endonuclease MutL 0.49 ABID97_RS17895 transcriptional regulator NrdR low > 91
Azospirillum brasilense Sp245 0.22 AZOBR_RS05025 DNA mismatch repair protein MutL 0.47 AZOBR_RS10020 NrdR family transcriptional regulator — —
Azospirillum sp. SherDot2 0.22 MPMX19_01619 DNA mismatch repair protein MutL 0.46 MPMX19_00728 Transcriptional repressor NrdR 0.32 79
Rhodospirillum rubrum S1H 0.22 Rru_A2946 DNA mismatch repair protein (NCBI) 0.44 Rru_A1826 Protein of unknown function DUF193 (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS04225 DNA mismatch repair endonuclease MutL 0.46 A4249_RS06035 transcriptional regulator NrdR — —
Phaeobacter inhibens DSM 17395 0.21 PGA1_c32740 DNA mismatch repair protein MutL 0.40 PGA1_c08860 transcriptional repressor — —
Sphingomonas koreensis DSMZ 15582 0.20 Ga0059261_0371 DNA mismatch repair protein MutL 0.43 Ga0059261_1985 transcriptional regulator NrdR low > 68
Bosea sp. OAE506 0.19 ABIE41_RS23235 DNA mismatch repair endonuclease MutL 0.42 ABIE41_RS19765 transcriptional regulator NrdR — —

Not shown: 7 genomes with orthologs for ECD_04037 only; 15 genomes with orthologs for ECD_00361 only