| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_02495 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.0 | CSW01_12765 | | outer membrane lipid asymmetry maintenance protein MlaD | 0.43 | 9 |
| Rahnella sp. WP5 | 0.73 | EX31_RS02660 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.51 | EX31_RS12445 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 89 |
| Klebsiella michiganensis M5al | 0.72 | BWI76_RS24070 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.49 | BWI76_RS25220 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 92 |
| Escherichia coli ECRC99 | 0.72 | KEDOAH_08860 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.49 | KEDOAH_10165 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | — | — |
| Escherichia fergusonii Becca | 0.72 | EFB2_00956 | | Ribosomal RNA small subunit methyltransferase E | 0.49 | EFB2_00630 | | Intermembrane phospholipid transport system binding protein MlaD | low | > 86 |
| Escherichia coli ECRC102 | 0.72 | NIAGMN_17045 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.49 | NIAGMN_15745 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | low | > 80 |
| Escherichia coli ECRC100 | 0.72 | OKFHMN_19280 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.49 | OKFHMN_17985 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | low | > 79 |
| Escherichia coli ECRC62 | 0.72 | BNILDI_09730 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.49 | BNILDI_01750 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | low | > 75 |
| Escherichia coli ECOR38 | 0.72 | HEPCGN_18585 | | Ribosomal RNA small subunit methyltransferase E | 0.49 | HEPCGN_16860 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | low | > 88 |
| Escherichia coli Nissle 1917 | 0.72 | ECOLIN_RS16390 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.49 | ECOLIN_RS18380 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 55 |
| Escherichia coli ECRC101 | 0.72 | MCAODC_09800 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.49 | MCAODC_08505 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | low | > 87 |
| Escherichia coli ECOR27 | 0.72 | NOLOHH_11150 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.49 | NOLOHH_09785 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | low | > 76 |
| Escherichia coli BL21 | 0.72 | ECD_02776 | | 16S rRNA m(3)U1498 methyltransferase, SAM-dependent | 0.49 | ECD_03058 | | OM lipid asymmetry maintenance protein; membrane-anchored ABC family periplasmic binding protein | low | > 61 |
| Escherichia coli BW25113 | 0.72 | b2946 | yggJ | orf, hypothetical protein (VIMSS) | 0.49 | b3193 | yrbD | predicted ABC-type organic solvent transporter (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.72 | OHPLBJKB_00772 | | Ribosomal RNA small subunit methyltransferase E | 0.49 | OHPLBJKB_00507 | | putative phospholipid ABC transporter-binding protein MlaD | low | > 74 |
| Escherichia coli ECRC98 | 0.72 | JDDGAC_22910 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.49 | JDDGAC_21610 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | low | > 87 |
| Klebsiella pneumoniae MKP103 | 0.71 | KDGMDA_04585 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.49 | KDGMDA_06035 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 95 |
| Enterobacter asburiae PDN3 | 0.70 | EX28DRAFT_2984 | | RNA methyltransferase, RsmE family | 0.48 | EX28DRAFT_3247 | | mce related protein | low | > 76 |
| Pantoea sp. MT58 | 0.70 | IAI47_03620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.50 | IAI47_17135 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.70 | PagCFBP13505_RS16075 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.46 | PagCFBP13505_RS09300 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 74 |
| Serratia liquefaciens MT49 | 0.70 | IAI46_21385 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.56 | IAI46_22420 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 87 |
| Enterobacter sp. TBS_079 | 0.70 | MPMX20_03804 | | Ribosomal RNA small subunit methyltransferase E | 0.47 | MPMX20_04099 | | Intermembrane phospholipid transport system binding protein MlaD | low | > 85 |
| Erwinia tracheiphila HP pepo 2.2 | 0.69 | IJEDHG_03425 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.44 | IJEDHG_13790 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | low | > 61 |
| Erwinia amylovora T8 | 0.69 | OLJFJH_08575 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.50 | OLJFJH_07115 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 58 |
| Erwinia tracheiphila SCR3 | 0.69 | LU632_RS05485 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.44 | LU632_RS21235 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.68 | GFF3048 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.49 | GFF2937 | | Uncharacterized ABC transporter, periplasmic component YrbD | low | > 78 |
| Pectobacterium carotovorum WPP14 | 0.67 | HER17_RS02640 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.52 | HER17_RS20015 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 75 |
| Shewanella sp. ANA-3 | 0.66 | Shewana3_3444 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.52 | Shewana3_0680 | | hypothetical protein (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.65 | SO0832 | | conserved hypothetical protein TIGR00046 (NCBI ptt file) | 0.51 | SO3952 | | mce-related protein (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.64 | Sama_0575 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.52 | Sama_3079 | | mce-related protein (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.63 | Shew_3224 | | hypothetical protein (RefSeq) | 0.52 | Shew_3302 | | hypothetical protein (RefSeq) | low | > 60 |
| Marinobacter adhaerens HP15 | 0.48 | HP15_2926 | | ribosomal RNA small subunit methyltransferase E | 0.30 | HP15_2434 | | mammalian cell entry related domain protein | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.48 | MIT1002_03054 | | Ribosomal RNA small subunit methyltransferase E | 0.45 | MIT1002_00836 | | putative phospholipid ABC transporter-binding protein MlaD | low | > 70 |
| Pseudomonas fluorescens FW300-N2E3 | 0.44 | AO353_08050 | | 16S rRNA methyltransferase | 0.32 | AO353_05140 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.44 | AO356_13565 | | 16S rRNA methyltransferase | 0.31 | AO356_06995 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 104 |
| Pseudomonas simiae WCS417 | 0.43 | PS417_26545 | | 16S rRNA methyltransferase | 0.31 | PS417_04385 | | organic solvent ABC transporter substrate-binding protein | 0.17 | 65 |
| Pseudomonas fluorescens FW300-N2E2 | 0.43 | Pf6N2E2_4630 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.32 | Pf6N2E2_3258 | | Uncharacterized ABC transporter, periplasmic component YrbD | low | > 103 |
| Pseudomonas sp. RS175 | 0.43 | PFR28_04209 | | Ribosomal RNA small subunit methyltransferase E | 0.31 | PFR28_00181 | | Intermembrane phospholipid transport system binding protein MlaD | low | > 88 |
| Pseudomonas aeruginosa MRSN321 | 0.43 | DY961_RS22075 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.30 | DY961_RS24205 | mlaD;go_process=phospholipid | outer membrane lipid asymmetry maintenance protein MlaD | low | > 100 |
| Pseudomonas lactucae CFBP13502 | 0.43 | GEMAOFIL_05440 | | Ribosomal RNA small subunit methyltransferase E | 0.31 | GEMAOFIL_01083 | | Intermembrane phospholipid transport system binding protein MlaD | low | > 96 |
| Pseudomonas orientalis W4I3 | 0.43 | QF045_RS00940 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.31 | QF045_RS07375 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 93 |
| Pseudomonas aeruginosa PA14 | 0.43 | IKLFDK_23325 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.30 | IKLFDK_01815 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 98 |
| Pseudomonas fluorescens SBW25 | 0.43 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.31 | PFLU_RS04440 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 109 |
| Pseudomonas aeruginosa PUPa3 | 0.43 | DQ20_RS37225 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.30 | DQ20_RS56665 | mlaD;go_process=phospholipid | outer membrane lipid asymmetry maintenance protein MlaD | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.43 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.31 | PFLU_RS04440 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 109 |
| Pseudomonas sp. SVBP6 | 0.43 | COO64_RS13645 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.33 | COO64_RS04325 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | low | > 93 |
| Pseudomonas sp. DMC3 | 0.43 | GFF180 | | Ribosomal RNA small subunit methyltransferase E | 0.31 | GFF1836 | | Intermembrane phospholipid transport system binding protein MlaD | low | > 89 |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_1043 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.30 | PfGW456L13_5006 | | Uncharacterized ABC transporter, periplasmic component YrbD | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_2376 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.32 | Pf1N1B4_1072 | | Uncharacterized ABC transporter, periplasmic component YrbD | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.42 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.32 | Psyr_4139 | | Mce4/Rv3499c/MTV023.06c protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.42 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.32 | Psyr_4139 | | Mce4/Rv3499c/MTV023.06c protein | low | > 86 |
| Pseudomonas sp. BP01 | 0.42 | JOY50_RS09765 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.32 | JOY50_RS11170 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | low | > 84 |
| Pseudomonas putida KT2440 | 0.42 | PP_4985 | | 16S rRNA m3U1498 methyltransferase | 0.32 | PP_0960 | | phospholipid ABC transporter binding protein | low | > 96 |
| Pseudomonas segetis P6 | 0.42 | MPMX49_00634 | | Ribosomal RNA small subunit methyltransferase E | 0.31 | MPMX49_03850 | | Intermembrane phospholipid transport system binding protein MlaD | low | > 75 |
| Pseudomonas sp. S08-1 | 0.41 | OH686_10855 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.31 | OH686_08500 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 80 |
| Methylophilus sp. DMC18 | 0.41 | GFF2490 | | Ribosomal RNA small subunit methyltransferase E | 0.36 | GFF1553 | | Intermembrane phospholipid transport system binding protein MlaD | — | — |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_0305 | | RNA methyltransferase, RsmE family | 0.32 | Psest_3305 | | ABC-type transport system involved in resistance to organic solvents, periplasmic component | low | > 67 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.1558.1 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.31 | Xcc-8004.5366.1 | | Uncharacterized ABC transporter, periplasmic component YrbD | — | — |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_01001 | | Ribosomal RNA small subunit methyltransferase E | 0.22 | MPMX26_02739 | | Intermembrane phospholipid transport system binding protein MlaD | low | > 36 |
| Lysobacter sp. OAE881 | 0.36 | ABIE51_RS05260 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.31 | ABIE51_RS01005 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 62 |
| Dechlorosoma suillum PS | 0.35 | Dsui_1568 | | RNA methyltransferase, RsmE family | 0.40 | Dsui_1400 | | ABC-type transport system involved in resistance to organic solvents, periplasmic component | — | — |
| Burkholderia phytofirmans PsJN | 0.35 | BPHYT_RS16855 | | 16S rRNA methyltransferase | 0.44 | BPHYT_RS17755 | | ABC transporter substrate-binding protein | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.34 | H281DRAFT_06311 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.43 | H281DRAFT_05643 | | phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein | low | > 103 |
| Ralstonia solanacearum UW163 | 0.34 | UW163_RS07745 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.44 | UW163_RS06725 | | outer membrane lipid asymmetry maintenance protein MlaD | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.34 | RALBFv3_RS05880 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.44 | RALBFv3_RS06890 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.34 | ABZR87_RS01505 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | ABZR87_RS02545 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.34 | ABIE53_003540 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.43 | ABIE53_003710 | | phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein | low | > 113 |
| Ralstonia solanacearum PSI07 | 0.34 | RPSI07_RS11365 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.43 | RPSI07_RS10345 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 81 |
| Acinetobacter baumannii LAC-4 | 0.34 | RR41_RS05720 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.26 | RR41_RS02040 | | outer membrane lipid asymmetry maintenance protein MlaD | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS27020 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.43 | QEN71_RS27910 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS17590 | | 16S rRNA methyltransferase | 0.44 | RR42_RS18960 | | ABC transporter substrate-binding protein | low | > 128 |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_4323 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.40 | Ac3H11_4714 | | Uncharacterized ABC transporter, periplasmic component YrbD | 0.51 | 10 |
| Ralstonia solanacearum GMI1000 | 0.32 | RS_RS13825 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.43 | RS_RS14835 | | outer membrane lipid asymmetry maintenance protein MlaD | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.29 | HSERO_RS07110 | | 16S rRNA methyltransferase | 0.40 | HSERO_RS20390 | | ABC transporter substrate-binding protein | — | — |
| Variovorax sp. SCN45 | 0.28 | GFF3255 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) | 0.39 | GFF5336 | | Phospholipid ABC transporter substrate-binding protein MlaD | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.28 | GFF2462 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.40 | GFF1323 | | Uncharacterized ABC transporter, periplasmic component YrbD | low | > 90 |
| Azospirillum sp. SherDot2 | 0.19 | MPMX19_00577 | | Ribosomal RNA small subunit methyltransferase E | 0.20 | MPMX19_01649 | | Intermembrane phospholipid transport system binding protein MlaD | — | — |
| Phaeobacter inhibens DSM 17395 | 0.18 | PGA1_c02950 | | RNA methyltransferase-like protein | 0.19 | PGA1_c12570 | | ABC-type transport system involved in resistance to organic solvents, periplasmic component | low | > 62 |
| Azospirillum brasilense Sp245 | 0.18 | AZOBR_RS11890 | | 16S rRNA methyltransferase | 0.23 | AZOBR_RS11990 | | ATPase AAA | low | > 97 |
Not shown: 39 genomes with orthologs for CSW01_02495 only; 2 genomes with orthologs for CSW01_12765 only