Conservation of cofitness between CSW01_03400 and CSW01_09600 in Vibrio cholerae E7946 ATCC 55056

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03400 tRNA pseudouridine(55) synthase TruB 1.0 CSW01_09600 DNA-binding protein HU-beta 0.50 11
Serratia liquefaciens MT49 0.72 IAI46_01945 tRNA pseudouridine(55) synthase TruB 0.75 IAI46_05025 DNA-binding protein HU-beta low > 86
Dickeya dadantii 3937 0.71 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.74 DDA3937_RS05655 DNA-binding protein HU-beta low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB 0.74 HGI48_RS05700 DNA-binding protein HU-beta low > 71
Dickeya dianthicola ME23 0.69 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB 0.74 DZA65_RS06025 DNA-binding protein HU-beta low > 75
Pantoea agglomerans CFBP13505 P0401 0.68 PagCFBP13505_RS09110 tRNA pseudouridine(55) synthase TruB 0.75 PagCFBP13505_RS10555 DNA-binding protein HU-beta low > 74
Pectobacterium carotovorum WPP14 0.68 HER17_RS18200 tRNA pseudouridine(55) synthase TruB 0.73 HER17_RS15835 DNA-binding protein HU-beta low > 75
Klebsiella michiganensis M5al 0.68 BWI76_RS25080 tRNA pseudouridine(55) synthase 0.76 BWI76_RS06540 DNA-binding protein HU-beta low > 92
Pantoea sp. MT58 0.67 IAI47_17015 tRNA pseudouridine(55) synthase TruB 0.75 IAI47_14640 DNA-binding protein HU-beta low > 76
Erwinia amylovora T8 0.67 OLJFJH_07250 tRNA pseudouridine(55) synthase TruB 0.73 OLJFJH_17955 DNA-binding protein HU-beta low > 58
Escherichia coli ECRC100 0.67 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB 0.74 OKFHMN_08315 hupB DNA-binding protein HU-beta low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00534 tRNA pseudouridine synthase B 0.75 OHPLBJKB_03233 DNA-binding protein HU-beta 0.39 65
Escherichia coli BW25113 0.67 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.75 b0440 hupB HU, DNA-binding transcriptional regulator, beta subunit (NCBI) low > 76
Escherichia coli ECOR38 0.67 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.74 HEPCGN_06930 hupB DNA-binding protein HU-beta low > 88
Escherichia coli ECRC99 0.67 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB 0.74 KEDOAH_19650 hupB DNA-binding protein HU-beta — —
Escherichia coli ECRC98 0.67 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.74 JDDGAC_11970 hupB DNA-binding protein HU-beta low > 87
Escherichia coli ECRC102 0.67 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB 0.74 NIAGMN_06370 hupB DNA-binding protein HU-beta low > 80
Escherichia coli Nissle 1917 0.67 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB 0.74 ECOLIN_RS02640 nucleoid-associated protein HU-beta low > 55
Escherichia coli BL21 0.67 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.75 ECD_00392 HU, DNA-binding transcriptional regulator, beta subunit low > 61
Escherichia fergusonii Becca 0.67 EFB2_00657 tRNA pseudouridine synthase B 0.75 EFB2_03617 DNA-binding protein HU-beta low > 86
Klebsiella pneumoniae MKP103 0.67 KDGMDA_05890 tRNA pseudouridine(55) synthase TruB 0.76 KDGMDA_14625 DNA-binding protein HU-beta low > 95
Escherichia coli ECRC101 0.67 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.74 MCAODC_27540 hupB DNA-binding protein HU-beta low > 88
Escherichia coli ECRC62 0.67 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB 0.74 BNILDI_22665 hupB DNA-binding protein HU-beta low > 75
Escherichia coli ECOR27 0.67 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.74 NOLOHH_01250 hupB DNA-binding protein HU-beta low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.75 GFF4356 DNA-binding protein HU-beta low > 78
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3217 tRNA pseudouridine(55) synthase 0.76 EX28DRAFT_2530 Bacterial nucleoid DNA-binding protein low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_04071 tRNA pseudouridine synthase B 0.76 MPMX20_01031 DNA-binding protein HU-beta low > 85
Erwinia tracheiphila SCR3 0.66 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB 0.78 LU632_RS18330 hupB DNA-binding protein HU-beta low > 74
Erwinia tracheiphila HP pepo 2.2 0.65 IJEDHG_13945 truB tRNA pseudouridine(55) synthase TruB 0.76 IJEDHG_16455 hupB DNA-binding protein HU-beta — —
Rahnella sp. WP5 0.65 EX31_RS08530 tRNA pseudouridine(55) synthase TruB 0.75 EX31_RS22260 DNA-binding protein HU-beta low > 89
Shewanella sp. ANA-3 0.64 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) 0.75 Shewana3_2658 histone family protein DNA-binding protein (RefSeq) — —
Shewanella loihica PV-4 0.64 Shew_2825 tRNA pseudouridine synthase B (RefSeq) 0.74 Shew_2505 histone family protein DNA-binding protein (RefSeq) — —
Shewanella amazonensis SB2B 0.63 Sama_0963 pseudouridylate synthase (RefSeq) 0.72 Sama_1227 HU family DNA-binding protein (RefSeq) — —
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0108 tRNA pseudouridine 55 synthase 0.73 B158DRAFT_1039 Bacterial nucleoid DNA-binding protein low > 40
Alteromonas macleodii MIT1002 0.50 MIT1002_01773 tRNA pseudouridine synthase B 0.81 MIT1002_02756 hypothetical protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.68 Psyr_1750 bacterial nucleoid protein HU beta subunit — —
Pseudomonas putida KT2440 0.46 PP_4710 tRNA pseudouridine 55 synthase 0.72 PP_2303 DNA binding regulator, beta subunit B — —
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.68 Psyr_1750 bacterial nucleoid protein HU beta subunit — —
Pseudomonas stutzeri RCH2 0.46 Psest_0983 tRNA pseudouridine 55 synthase 0.73 Psest_2284 Bacterial nucleoid DNA-binding protein — —
Pseudomonas sp. DMC3 0.46 GFF4990 tRNA pseudouridine synthase B 0.68 GFF1446 DNA-binding protein HU-beta — —
Pseudomonas sp. BP01 0.46 JOY50_RS26845 truB tRNA pseudouridine(55) synthase TruB 0.71 JOY50_RS25900 HU family DNA-binding protein — —
Marinobacter adhaerens HP15 0.46 HP15_3065 tRNA pseudouridine synthase B 0.72 HP15_2182 histone-like bacterial DNA-binding protein — —
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.67 PfGW456L13_2555 DNA-binding protein HU-beta — —
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_05550 pseudouridine synthase 0.67 AO353_20190 DNA-binding protein HU — —
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.67 Pf1N1B4_3948 DNA-binding protein HU-beta — —
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.67 Pf6N2E2_2215 DNA-binding protein HU-beta — —
Pseudomonas sp. S08-1 0.44 OH686_17155 tRNA pseudouridine(55) synthase 0.74 OH686_03630 DNA-binding protein HU-beta — —
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_07400 pseudouridine synthase 0.67 AO356_01735 DNA-binding protein HU — —
Pseudomonas sp. SVBP6 0.44 COO64_RS15160 truB tRNA pseudouridine(55) synthase TruB 0.69 COO64_RS19210 HU family DNA-binding protein low > 93
Pseudomonas fluorescens SBW25 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.69 PFLU_RS19155 HU family DNA-binding protein — —
Pseudomonas simiae WCS417 0.44 PS417_23960 pseudouridine synthase 0.69 PS417_17220 transcriptional regulator HU subunit alpha — —
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.69 PFLU_RS19155 HU family DNA-binding protein — —
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS17985 tRNA pseudouridine synthase B 0.65 HSERO_RS12900 transcriptional regulator HU subunit alpha — —
Pseudomonas aeruginosa PA14 0.43 IKLFDK_29890 tRNA pseudouridine(55) synthase TruB 0.74 IKLFDK_08765 DNA-binding protein HU-beta — —
Dechlorosoma suillum PS 0.42 Dsui_2720 tRNA pseudouridine 55 synthase 0.67 Dsui_2199 bacterial nucleoid DNA-binding protein low > 51
Methylophilus sp. DMC18 0.42 GFF2846 tRNA pseudouridine synthase B 0.48 GFF1306 DNA-binding protein HU-beta low > 43
Ralstonia solanacearum GMI1000 0.41 RS_RS06470 tRNA pseudouridine(55) synthase TruB 0.59 RS_RS08660 HU family DNA-binding protein — —
Paraburkholderia graminis OAS925 0.40 ABIE53_001832 tRNA pseudouridine55 synthase 0.67 ABIE53_002118 DNA-binding protein HU-beta low > 113
Acinetobacter baumannii LAC-4 0.40 RR41_RS01740 tRNA pseudouridine(55) synthase TruB 0.64 RR41_RS12365 HU family DNA-binding protein — —
Ralstonia solanacearum UW163 0.40 UW163_RS13150 tRNA pseudouridine(55) synthase TruB 0.59 UW163_RS14645 HU family DNA-binding protein — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB 0.59 RPSI07_RS16140 HU family DNA-binding protein — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB 0.59 RALBFv3_RS01335 HU family DNA-binding protein — —
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS08080 tRNA pseudouridine synthase B 0.68 BPHYT_RS09465 transcriptional regulator low > 109
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB 0.68 QEN71_RS21970 HU family DNA-binding protein low > 153
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_05106 tRNA pseudouridine synthase B 0.67 H281DRAFT_00899 bacterial nucleoid protein Hbs — —
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB 0.56 ABZR87_RS12780 HU family DNA-binding protein low > 80
Acinetobacter radioresistens SK82 0.38 MPMX26_02778 tRNA pseudouridine synthase B 0.63 MPMX26_01331 DNA-binding protein HU-beta — —
Variovorax sp. OAS795 0.37 ABID97_RS16475 tRNA pseudouridine(55) synthase TruB 0.67 ABID97_RS10665 HU family DNA-binding protein — —
Rhodanobacter sp000427505 FW510-R12 0.36 LRK53_RS09080 tRNA pseudouridine(55) synthase TruB 0.66 LRK53_RS12130 HU family DNA-binding protein — —
Variovorax sp. SCN45 0.36 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.66 GFF2853 DNA-binding protein HU-beta low > 127
Lysobacter sp. OAE881 0.36 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB 0.61 ABIE51_RS14140 HU family DNA-binding protein — —
Rhodanobacter denitrificans MT42 0.35 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB 0.66 LRK55_RS16465 HU family DNA-binding protein — —
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB 0.66 OKGIIK_08025 himA integration host factor subunit alpha — —
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB 0.66 LRK54_RS16740 HU family DNA-binding protein low > 59
Azospirillum sp. SherDot2 0.33 MPMX19_02524 tRNA pseudouridine synthase B 0.54 MPMX19_01544 DNA-binding protein HU — —
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB 0.67 ABZR86_RS07315 HU family DNA-binding protein — —
Caulobacter crescentus NA1000 0.31 CCNA_00035 tRNA pseudouridine synthase B 0.46 CCNA_02036 DNA-binding protein HU low > 66
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_00035 tRNA pseudouridine synthase B 0.46 CCNA_02036 DNA-binding protein HU low > 67
Magnetospirillum magneticum AMB-1 0.29 AMB_RS20810 tRNA pseudouridine(55) synthase TruB 0.55 AMB_RS14030 HU family DNA-binding protein — —
Rhodospirillum rubrum S1H 0.28 Rru_A3783 tRNA pseudouridine synthase B (NCBI) 0.53 Rru_A1553 Histone-like DNA-binding protein (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_2142 tRNA pseudouridine(55) synthase 0.54 Ga0059261_0103 Bacterial nucleoid DNA-binding protein — —

Not shown: 17 genomes with orthologs for CSW01_03400 only; 14 genomes with orthologs for CSW01_09600 only