| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 1.0 | CSW01_09260 | | peptidylprolyl isomerase | 0.47 | 13 |
| Klebsiella michiganensis M5al | 0.64 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | 0.67 | BWI76_RS07085 | | peptidyl-prolyl cis-trans isomerase | — | — |
| Enterobacter sp. TBS_079 | 0.64 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | 0.66 | MPMX20_01101 | | Peptidyl-prolyl cis-trans isomerase B | low | > 85 |
| Enterobacter asburiae PDN3 | 0.64 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | 0.67 | EX28DRAFT_2455 | | Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family | — | — |
| Klebsiella pneumoniae MKP103 | 0.63 | KDGMDA_18660 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | KDGMDA_15020 | | peptidylprolyl isomerase B | — | — |
| Escherichia coli ECOR27 | 0.63 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | NOLOHH_00815 | ppiB | peptidylprolyl isomerase B | — | — |
| Escherichia coli ECRC62 | 0.63 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | BNILDI_22245 | ppiB | peptidylprolyl isomerase B | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.63 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | 0.67 | OHPLBJKB_03156 | | Peptidyl-prolyl cis-trans isomerase B | — | — |
| Escherichia coli BL21 | 0.63 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | 0.67 | ECD_00475 | | peptidyl-prolyl cis-trans isomerase B (rotamase B) | — | — |
| Escherichia coli ECOR38 | 0.63 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.68 | HEPCGN_06465 | ppiB | peptidylprolyl isomerase B | — | — |
| Escherichia fergusonii Becca | 0.63 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | 0.67 | EFB2_03536 | | Peptidyl-prolyl cis-trans isomerase B | — | — |
| Escherichia coli BW25113 | 0.63 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | 0.67 | b0525 | ppiB | peptidyl-prolyl cis-trans isomerase B (rotamase B) (NCBI) | — | — |
| Rahnella sp. WP5 | 0.63 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.63 | EX31_RS22640 | | peptidylprolyl isomerase B | — | — |
| Escherichia coli ECRC98 | 0.63 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | JDDGAC_11475 | ppiB | peptidylprolyl isomerase B | — | — |
| Escherichia coli ECRC102 | 0.63 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | NIAGMN_05880 | ppiB | peptidylprolyl isomerase B | — | — |
| Escherichia coli ECRC100 | 0.63 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | OKFHMN_07825 | ppiB | peptidylprolyl isomerase B | — | — |
| Escherichia coli Nissle 1917 | 0.63 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | ECOLIN_RS03045 | | peptidylprolyl isomerase B | — | — |
| Escherichia coli ECRC99 | 0.63 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | KEDOAH_20145 | ppiB | peptidylprolyl isomerase B | — | — |
| Pectobacterium carotovorum WPP14 | 0.63 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.69 | HER17_RS06485 | | peptidylprolyl isomerase B | — | — |
| Escherichia coli ECRC101 | 0.63 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | MCAODC_27045 | ppiB | peptidylprolyl isomerase B | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.62 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.66 | GFF4441 | | Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) | — | — |
| Pantoea sp. MT58 | 0.62 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | IAI47_14340 | | peptidylprolyl isomerase B | — | — |
| Erwinia tracheiphila SCR3 | 0.62 | LU632_RS14855 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | LU632_RS15235 | ppiB | peptidylprolyl isomerase B | — | — |
| Pantoea agglomerans CFBP13505 P0401 | 0.62 | PagCFBP13505_RS05230 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.66 | PagCFBP13505_RS10870 | | peptidylprolyl isomerase B | — | — |
| Erwinia amylovora T8 | 0.62 | OLJFJH_15565 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.68 | OLJFJH_17620 | | peptidylprolyl isomerase B | — | — |
| Erwinia tracheiphila HP pepo 2.2 | 0.62 | IJEDHG_00715 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | IJEDHG_01010 | ppiB | peptidylprolyl isomerase B | — | — |
| Serratia liquefaciens MT49 | 0.61 | IAI46_09755 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.68 | IAI46_05385 | | peptidylprolyl isomerase B | low | > 86 |
| Shewanella sp. ANA-3 | 0.61 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | 0.76 | Shewana3_2665 | | peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.60 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | 0.72 | Shew_2512 | | peptidylprolyl isomerase (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.60 | Sama_1988 | | pseudouridylate synthase (RefSeq) | 0.78 | Sama_1220 | | peptidyl-prolyl cis-trans isomerase B (RefSeq) | — | — |
| Dickeya dadantii 3937 | 0.59 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.68 | DDA3937_RS15095 | | peptidylprolyl isomerase B | — | — |
| Dickeya dianthicola ME23 | 0.59 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.69 | DZA65_RS15980 | | peptidylprolyl isomerase B | — | — |
| Dickeya dianthicola 67-19 | 0.59 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.69 | HGI48_RS15175 | | peptidylprolyl isomerase B | low | > 71 |
| Alteromonas macleodii MIT1002 | 0.57 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | 0.65 | MIT1002_02501 | | Peptidyl-prolyl cis-trans isomerase B | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.50 | B158DRAFT_1770 | | ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) | 0.61 | B158DRAFT_1021 | | Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family | low | > 40 |
| Pseudomonas sp. BP01 | 0.50 | JOY50_RS16830 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.56 | JOY50_RS05930 | | peptidylprolyl isomerase | — | — |
| Pseudomonas stutzeri RCH2 | 0.50 | Psest_1680 | | pseudouridine synthase, RluA family | 0.63 | Psest_2304 | | Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family | — | — |
| Pseudomonas sp. S08-1 | 0.50 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | 0.63 | OH686_03750 | | Peptidyl-prolyl cis-trans isomerase PpiB | low | > 80 |
| Pseudomonas putida KT2440 | 0.50 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | 0.58 | PP_2903 | | peptidyl-prolyl cis-trans isomerase B (rotamase B) | 0.23 | 93 |
| Marinobacter adhaerens HP15 | 0.49 | HP15_2221 | | pseudouridine synthase, RluA family | 0.63 | HP15_2190 | | peptidyl-prolyl cis-trans isomerase B | low | > 73 |
| Pseudomonas sp. SVBP6 | 0.49 | COO64_RS05845 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.59 | COO64_RS09965 | | peptidylprolyl isomerase | low | > 93 |
| Pseudomonas segetis P6 | 0.49 | MPMX49_02072 | | Ribosomal large subunit pseudouridine synthase C | 0.61 | MPMX49_02245 | | Peptidyl-prolyl cis-trans isomerase B | — | — |
| Pseudomonas sp. RS175 | 0.49 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | 0.59 | PFR28_02745 | | Peptidyl-prolyl cis-trans isomerase cyp18 | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.48 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.60 | Psyr_1733 | | Peptidyl-prolyl cis-trans isomerase, cyclophilin type | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.48 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.60 | Psyr_1733 | | Peptidyl-prolyl cis-trans isomerase, cyclophilin type | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.60 | Pf6N2E2_151 | | Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) | — | — |
| Pseudomonas aeruginosa PA14 | 0.48 | IKLFDK_15135 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.66 | IKLFDK_08675 | | peptidylprolyl isomerase | low | > 100 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_20125 | | 23S rRNA pseudouridylate synthase | 0.59 | AO356_01015 | | peptidylprolyl isomerase | low | > 104 |
| Pseudomonas sp. DMC3 | 0.48 | GFF4765 | | Ribosomal large subunit pseudouridine synthase C | 0.58 | GFF1490 | | Peptidyl-prolyl cis-trans isomerase cyp18 | low | > 89 |
| Pseudomonas lactucae CFBP13502 | 0.47 | GEMAOFIL_04440 | | Ribosomal large subunit pseudouridine synthase C | 0.59 | GEMAOFIL_03695 | | Peptidyl-prolyl cis-trans isomerase cyp18 | low | > 93 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.58 | PFLU_RS18885 | | peptidyl-prolyl cis-trans isomerase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.58 | PFLU_RS18885 | | peptidyl-prolyl cis-trans isomerase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_21480 | | 23S rRNA pseudouridylate synthase | 0.57 | PS417_16900 | | peptidylprolyl isomerase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_01405 | | 23S rRNA pseudouridylate synthase | 0.58 | AO353_27825 | | peptidylprolyl isomerase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.58 | PfGW456L13_2608 | | Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.45 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.58 | Pf1N1B4_4004 | | Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS04500 | | RluA family pseudouridine synthase | 0.62 | QEN71_RS06115 | | peptidylprolyl isomerase | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | 0.63 | BPHYT_RS12445 | | cyclophilin | — | — |
| Paraburkholderia graminis OAS925 | 0.43 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.64 | ABIE53_002710 | | peptidyl-prolyl cis-trans isomerase B (cyclophilin B) | low | > 113 |
| Herbaspirillum seropedicae SmR1 | 0.43 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | 0.60 | HSERO_RS09310 | | cyclophilin | — | — |
| Acidovorax sp. GW101-3H11 | 0.43 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.52 | Ac3H11_42 | | Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) | low | > 79 |
| Variovorax sp. SCN45 | 0.43 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | 0.54 | GFF553 | | Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) | low | > 127 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.43 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.64 | H281DRAFT_00543 | | peptidyl-prolyl cis-trans isomerase B (cyclophilin B) | low | > 103 |
| Variovorax sp. OAS795 | 0.42 | ABID97_RS08250 | | RluA family pseudouridine synthase | 0.54 | ABID97_RS17860 | | peptidylprolyl isomerase | low | > 91 |
| Dechlorosoma suillum PS | 0.41 | Dsui_2437 | | pseudouridine synthase, RluA family | 0.63 | Dsui_3088 | | peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family | low | > 51 |
| Acinetobacter baumannii LAC-4 | 0.41 | RR41_RS16980 | | RluA family pseudouridine synthase | 0.64 | RR41_RS07135 | | peptidyl-prolyl cis-trans isomerase | low | > 55 |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS11840 | | RluA family pseudouridine synthase | 0.57 | UW163_RS12455 | | cyclophilin | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.41 | RR42_RS14155 | | pseudouridine synthase | 0.56 | RR42_RS06335 | | cyclophilin | low | > 128 |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | 0.57 | RALBFv3_RS14985 | | cyclophilin | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS05155 | | RluA family pseudouridine synthase | 0.58 | RS_RS05800 | | cyclophilin | — | — |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS19085 | | RluA family pseudouridine synthase | 0.58 | RPSI07_RS18390 | | cyclophilin | — | — |
| Methylophilus sp. DMC18 | 0.41 | GFF1177 | | Ribosomal large subunit pseudouridine synthase C | 0.61 | GFF2571 | | Peptidyl-prolyl cis-trans isomerase cyp18 | low | > 43 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.54 | GFF5146 | | Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) | 0.59 | 77 |
| Ralstonia sp. UNC404CL21Col | 0.41 | ABZR87_RS10090 | | RluA family pseudouridine synthase | 0.58 | ABZR87_RS10630 | | peptidylprolyl isomerase | low | > 80 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_00317 | | Ribosomal large subunit pseudouridine synthase C | 0.63 | MPMX26_01727 | | Peptidyl-prolyl cis-trans isomerase cyp18 | low | > 36 |
| Castellaniella sp019104865 MT123 | 0.38 | ABCV34_RS08415 | | RluA family pseudouridine synthase | 0.60 | ABCV34_RS00375 | | peptidylprolyl isomerase | low | > 48 |
| Phaeobacter inhibens DSM 17395 | 0.30 | PGA1_c01950 | | ribosomal large subunit pseudouridine synthase C | 0.24 | PGA1_c17520 | | putative peptidyl-prolyl cis-trans isomerase A | — | — |
| Agrobacterium fabrum C58 | 0.27 | Atu1471 | | ribosomal large subunit pseudouridine synthase C | 0.25 | Atu1679 | | peptidyl prolyl cis-trans isomerase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.26 | AMB_RS15620 | | RluA family pseudouridine synthase | 0.24 | AMB_RS12030 | | peptidylprolyl isomerase | low | > 64 |
| Sinorhizobium meliloti 1021 | 0.26 | SMc01275 | | ribosomal large subunit pseudouridine synthase C protein | 0.23 | SMc01208 | | peptidyl-prolyl cis-trans isomerase B protein | low | > 103 |
| Caulobacter crescentus NA1000 | 0.25 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | 0.26 | CCNA_01655 | | cyclophilin-type peptidylprolyl cis-trans isomerase | low | > 66 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.25 | A4249_RS07865 | | RluA family pseudouridine synthase | 0.24 | A4249_RS03010 | | peptidylprolyl isomerase | low | > 48 |
| Caulobacter crescentus NA1000 Δfur | 0.25 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | 0.26 | CCNA_01655 | | cyclophilin-type peptidylprolyl cis-trans isomerase | low | > 67 |
| Sphingomonas koreensis DSMZ 15582 | 0.24 | Ga0059261_1033 | | pseudouridine synthase, RluA family | 0.26 | Ga0059261_2222 | | Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family | — | — |
| Fusobacterium nucleatum SB010 | 0.23 | HUW76_04985 | | RluA family pseudouridine synthase | 0.19 | HUW76_03010 | | peptidylprolyl isomerase | low | > 35 |
Not shown: 13 genomes with orthologs for CSW01_10130 only; 9 genomes with orthologs for CSW01_09260 only