Conservation of cofitness between CSW01_00740 and CSW01_05115 in Vibrio cholerae E7946 ATCC 55056

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 1.0 CSW01_05115 amidophosphoribosyltransferase 0.49 14
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.77 OHPLBJKB_01393 Amidophosphoribosyltransferase low > 74
Escherichia coli BL21 0.57 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.77 ECD_02237 amidophosphoribosyltransferase low > 61
Escherichia fergusonii Becca 0.56 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.77 EFB2_01546 Amidophosphoribosyltransferase low > 86
Escherichia coli ECOR38 0.56 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.77 HEPCGN_21910 purF amidophosphoribosyltransferase low > 88
Escherichia coli Nissle 1917 0.56 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase 0.77 ECOLIN_RS13405 amidophosphoribosyltransferase — —
Escherichia coli BW25113 0.56 b3465 yhhF predicted methyltransferase (NCBI) 0.77 b2312 purF amidophosphoribosyltransferase (NCBI) low > 76
Escherichia coli ECOR27 0.56 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.77 NOLOHH_14335 purF amidophosphoribosyltransferase low > 75
Escherichia coli ECRC62 0.56 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.77 BNILDI_13255 purF amidophosphoribosyltransferase low > 75
Escherichia coli ECRC102 0.56 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.77 NIAGMN_20485 purF amidophosphoribosyltransferase low > 80
Escherichia coli ECRC100 0.56 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.77 OKFHMN_22715 purF amidophosphoribosyltransferase low > 79
Escherichia coli ECRC98 0.56 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.77 JDDGAC_26675 purF amidophosphoribosyltransferase low > 87
Escherichia coli ECRC101 0.56 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.77 MCAODC_13755 purF amidophosphoribosyltransferase low > 87
Escherichia coli ECRC99 0.56 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.77 KEDOAH_05480 purF amidophosphoribosyltransferase — —
Pectobacterium carotovorum WPP14 0.56 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase 0.77 HER17_RS07020 amidophosphoribosyltransferase low > 75
Enterobacter asburiae PDN3 0.54 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.77 EX28DRAFT_0292 amidophosphoribosyltransferase (EC 2.4.2.14) low > 76
Erwinia tracheiphila HP pepo 2.2 0.54 IJEDHG_12795 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.75 IJEDHG_17915 purF amidophosphoribosyltransferase — —
Erwinia tracheiphila SCR3 0.54 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.75 LU632_RS07865 purF amidophosphoribosyltransferase low > 73
Enterobacter sp. TBS_079 0.54 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D 0.77 MPMX20_03247 Amidophosphoribosyltransferase low > 85
Klebsiella michiganensis M5al 0.53 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase 0.77 BWI76_RS20350 amidophosphoribosyltransferase low > 92
Dickeya dadantii 3937 0.53 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase 0.76 DDA3937_RS14435 amidophosphoribosyltransferase low > 74
Dickeya dianthicola 67-19 0.53 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase 0.76 HGI48_RS14405 amidophosphoribosyltransferase low > 71
Serratia liquefaciens MT49 0.53 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase 0.77 IAI46_17810 amidophosphoribosyltransferase low > 87
Dickeya dianthicola ME23 0.52 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase 0.76 DZA65_RS15335 amidophosphoribosyltransferase low > 75
Pantoea agglomerans CFBP13505 P0401 0.52 PagCFBP13516_RS01535 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.76 PagCFBP13516_RS06465 purF amidophosphoribosyltransferase low > 80
Pantoea sp. MT58 0.52 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase 0.76 IAI47_06275 amidophosphoribosyltransferase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.77 GFF1927 Amidophosphoribosyltransferase (EC 2.4.2.14) low > 78
Rahnella sp. WP5 0.51 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase 0.75 EX31_RS19570 amidophosphoribosyltransferase low > 89
Shewanella sp. ANA-3 0.51 Shewana3_3973 putative methyltransferase (RefSeq) 0.74 Shewana3_1483 amidophosphoribosyltransferase (RefSeq) low > 73
Klebsiella pneumoniae MKP103 0.50 KDGMDA_07265 16S rRNA (guanine(966)-N(2))-methyltransferase 0.77 KDGMDA_27185 amidophosphoribosyltransferase low > 94
Klebsiella pneumoniae MRSN742743 0.50 GJGHJB_00285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.77 GJGHJB_01465 purF amidophosphoribosyltransferase low > 83
Erwinia amylovora T8 0.49 OLJFJH_04385 16S rRNA (guanine(966)-N(2))-methyltransferase 0.75 OLJFJH_11280 amidophosphoribosyltransferase low > 58
Shewanella oneidensis MR-1 0.47 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.74 SO3064 purF amidophosphoribosyltransferase (NCBI ptt file) low > 76
Marinobacter adhaerens HP15 0.47 HP15_3491 conserved hypothetical protein 0.63 HP15_1821 amidophosphoribosyltransferase — —
Shewanella amazonensis SB2B 0.47 Sama_3469 hypothetical protein (RefSeq) 0.74 Sama_2146 amidophosphoribosyltransferase (RefSeq) low > 62
Shewanella loihica PV-4 0.46 Shew_3607 putative methyltransferase (RefSeq) 0.74 Shew_2302 amidophosphoribosyltransferase (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_0443 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) 0.66 B158DRAFT_1488 amidophosphoribosyltransferase (EC 2.4.2.14) — —
Pseudomonas sp. BP01 0.44 JOY50_RS20810 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.63 JOY50_RS16565 purF amidophosphoribosyltransferase — —
Pseudomonas putida KT2440 0.43 PP_5114 putative adenine methyltransferase 0.63 PP_2000 amidophosphoribosyl transferase low > 96
Pseudomonas syringae pv. syringae B728a 0.43 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.62 Psyr_1668 amidophosphoribosyltransferase low > 86
Alteromonas macleodii MIT1002 0.43 MIT1002_03683 Ribosomal RNA small subunit methyltransferase D 0.72 MIT1002_02524 Amidophosphoribosyltransferase low > 70
Pseudomonas syringae pv. syringae B728a ΔmexB 0.43 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.62 Psyr_1668 amidophosphoribosyltransferase low > 86
Pseudomonas segetis P6 0.43 ACVTMO_RS21925 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.63 ACVTMO_RS15165 purF amidophosphoribosyltransferase — —
Pseudomonas sp. SVBP6 0.42 COO64_RS12895 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.63 COO64_RS05600 purF amidophosphoribosyltransferase low > 91
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.60 ABZR86_RS06775 amidophosphoribosyltransferase low > 74
Pseudomonas stutzeri RCH2 0.41 Psest_0255 RNA methyltransferase, RsmD family 0.63 Psest_2579 amidophosphoribosyltransferase — —
Rhodanobacter denitrificans MT42 0.41 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.59 LRK55_RS01105 amidophosphoribosyltransferase 0.78 16
Pseudomonas aeruginosa PA14 0.40 IKLFDK_23575 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.62 IKLFDK_15815 amidophosphoribosyltransferase low > 98
Pseudomonas aeruginosa PUPa3 0.40 NPBIFN_00382 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.62 NPBIFN_01894 purF amidophosphoribosyltransferase low > 101
Pseudomonas sp. S08-1 0.40 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.63 OH686_04420 amidophosphoribosyltransferase — —
Pseudomonas aeruginosa MRSN321 0.40 PFGADD_00378 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.62 PFGADD_01857 purF amidophosphoribosyltransferase low > 99
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.59 LRK54_RS01340 amidophosphoribosyltransferase low > 59
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.59 OKGIIK_05570 purF amidophosphoribosyltransferase low > 53
Pseudomonas orientalis W4I3 0.40 QF045_RS01225 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.62 QF045_RS20675 amidophosphoribosyltransferase low > 93
Pseudomonas sp. RS175 0.40 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.63 PFR28_02811 Amidophosphoribosyltransferase low > 88
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.63 PfGW456L13_3935 Amidophosphoribosyltransferase (EC 2.4.2.14) — —
Pseudomonas lactucae CFBP13502 0.39 GEMAOFIL_05502 Ribosomal RNA small subunit methyltransferase D 0.62 GEMAOFIL_03935 Amidophosphoribosyltransferase low > 96
Pseudomonas fluorescens SBW25 0.39 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.62 PFLU_RS20515 amidophosphoribosyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.62 PFLU_RS20515 amidophosphoribosyltransferase low > 109
Pseudomonas sp. DMC3 0.39 GFF229 Ribosomal RNA small subunit methyltransferase D 0.63 GFF798 Amidophosphoribosyltransferase low > 89
Pseudomonas simiae WCS417 0.39 PS417_26825 16S rRNA methyltransferase 0.62 PS417_18535 amidophosphoribosyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.62 Pf6N2E2_76 Amidophosphoribosyltransferase (EC 2.4.2.14) — —
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.62 AO356_21465 amidophosphoribosyltransferase low > 104
Pseudomonas protegens RBAN4 0.38 FABNJH_29540 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.62 FABNJH_10840 purF amidophosphoribosyltransferase — —
Rhodanobacter sp000427505 FW510-R12 0.38 LRK53_RS15240 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.59 LRK53_RS08695 amidophosphoribosyltransferase low > 59
Dechlorosoma suillum PS 0.38 Dsui_1027 RNA methyltransferase, RsmD family 0.60 Dsui_3186 amidophosphoribosyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.62 AO353_20690 amidophosphoribosyltransferase — —
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS02815 methyltransferase 0.60 BPHYT_RS33840 amidophosphoribosyltransferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.60 H281DRAFT_06060 amidophosphoribosyltransferase low > 103
Acinetobacter radioresistens SK82 0.36 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D 0.60 MPMX26_01122 Amidophosphoribosyltransferase low > 36
Methylophilus sp. DMC18 0.35 GFF765 Ribosomal RNA small subunit methyltransferase D 0.63 GFF661 Amidophosphoribosyltransferase — —
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS01990 methyltransferase 0.59 RR42_RS14325 amidophosphoribosyltransferase — —
Ralstonia solanacearum UW163 0.35 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.61 UW163_RS11175 amidophosphoribosyltransferase — —
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.61 RALBFv3_RS02550 amidophosphoribosyltransferase — —
Ralstonia solanacearum GMI1000 0.35 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.61 RS_RS09930 amidophosphoribosyltransferase — —
Lysobacter sp. OAE881 0.35 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.59 ABIE51_RS06180 amidophosphoribosyltransferase low > 62
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.58 QEN71_RS17680 amidophosphoribosyltransferase low > 153
Acinetobacter baumannii LAC-4 0.34 RR41_RS09020 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.61 RR41_RS06350 amidophosphoribosyltransferase — —
Ralstonia solanacearum PSI07 0.34 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.62 RPSI07_RS14765 amidophosphoribosyltransferase — —
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS20695 methyltransferase 0.61 HSERO_RS16445 amidophosphoribosyltransferase — —
Paraburkholderia graminis OAS925 0.34 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase 0.60 ABIE53_004816 amidophosphoribosyltransferase — —
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.62 ABZR87_RS14465 amidophosphoribosyltransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.57 GFF300 Amidophosphoribosyltransferase (EC 2.4.2.14) — —
Castellaniella sp019104865 MT123 0.28 ABCV34_RS10145 RsmD family RNA methyltransferase 0.57 ABCV34_RS04130 amidophosphoribosyltransferase — —
Acidovorax sp. GW101-3H11 0.28 Ac3H11_3873 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.57 Ac3H11_2608 Amidophosphoribosyltransferase (EC 2.4.2.14) — —

Not shown: 1 genomes with orthologs for CSW01_00740 only; 29 genomes with orthologs for CSW01_05115 only