Conservation of cofitness between CSW01_12545 and CSW01_03400 in Vibrio cholerae E7946 ATCC 55056

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12545 5-formyltetrahydrofolate cyclo-ligase 1.0 CSW01_03400 tRNA pseudouridine(55) synthase TruB 0.39 17
Escherichia coli ECRC100 0.55 OKFHMN_19485 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.67 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB low > 79
Escherichia coli ECRC62 0.55 BNILDI_09930 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.67 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB low > 75
Escherichia coli ECRC102 0.55 NIAGMN_17250 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.67 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB low > 80
Escherichia coli ECRC101 0.55 MCAODC_10005 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.67 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.40 65
Escherichia coli ECOR27 0.55 NOLOHH_11395 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.67 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.62 25
Escherichia coli ECRC98 0.55 JDDGAC_23125 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.67 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.36 87
Escherichia coli ECRC99 0.55 KEDOAH_08655 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.67 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECOR38 0.55 HEPCGN_18775 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.67 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB low > 88
Escherichia coli Nissle 1917 0.55 ECOLIN_RS16205 5-formyltetrahydrofolate cyclo-ligase 0.67 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB low > 55
Escherichia fergusonii Becca 0.55 EFB2_00991 5-formyltetrahydrofolate cyclo-ligase 0.67 EFB2_00657 tRNA pseudouridine synthase B low > 86
Serratia liquefaciens MT49 0.54 IAI46_20895 5-formyltetrahydrofolate cyclo-ligase 0.72 IAI46_01945 tRNA pseudouridine(55) synthase TruB low > 87
Erwinia tracheiphila HP pepo 2.2 0.54 IJEDHG_03315 5-formyltetrahydrofolate cyclo-ligase 0.65 IJEDHG_13945 truB tRNA pseudouridine(55) synthase TruB — —
Erwinia tracheiphila SCR3 0.54 LU632_RS05860 5-formyltetrahydrofolate cyclo-ligase 0.66 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli BW25113 0.54 b2912 ygfA putative ligase (VIMSS) 0.67 b3166 truB tRNA pseudouridine synthase B (NCBI) low > 76
Enterobacter sp. TBS_079 0.54 MPMX20_03770 5-formyltetrahydrofolate cyclo-ligase 0.66 MPMX20_04071 tRNA pseudouridine synthase B low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_00804 5-formyltetrahydrofolate cyclo-ligase 0.67 OHPLBJKB_00534 tRNA pseudouridine synthase B low > 74
Escherichia coli BL21 0.53 ECD_02743 5-formyltetrahydrofolate cyclo-ligase family protein 0.67 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase low > 61
Pectobacterium carotovorum WPP14 0.53 HER17_RS19095 5-formyltetrahydrofolate cyclo-ligase 0.68 HER17_RS18200 tRNA pseudouridine(55) synthase TruB low > 75
Shewanella sp. ANA-3 0.52 Shewana3_3506 5-formyltetrahydrofolate cyclo-ligase (RefSeq) 0.64 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) low > 73
Rahnella sp. WP5 0.52 EX31_RS21480 5-formyltetrahydrofolate cyclo-ligase 0.65 EX31_RS08530 tRNA pseudouridine(55) synthase TruB low > 89
Enterobacter asburiae PDN3 0.51 EX28DRAFT_2964 5,10-methenyltetrahydrofolate synthetase 0.66 EX28DRAFT_3217 tRNA pseudouridine(55) synthase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF3012 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.67 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 78
Pantoea agglomerans CFBP13505 P0401 0.51 PagCFBP13505_RS15970 5-formyltetrahydrofolate cyclo-ligase 0.68 PagCFBP13505_RS09110 tRNA pseudouridine(55) synthase TruB low > 74
Dickeya dadantii 3937 0.51 DDA3937_RS02410 5-formyltetrahydrofolate cyclo-ligase 0.71 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB low > 74
Klebsiella pneumoniae MKP103 0.51 KDGMDA_04415 5-formyltetrahydrofolate cyclo-ligase 0.67 KDGMDA_05890 tRNA pseudouridine(55) synthase TruB low > 95
Erwinia amylovora T8 0.50 OLJFJH_08740 5-formyltetrahydrofolate cyclo-ligase 0.67 OLJFJH_07250 tRNA pseudouridine(55) synthase TruB low > 58
Dickeya dianthicola 67-19 0.50 HGI48_RS02370 5-formyltetrahydrofolate cyclo-ligase 0.70 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB low > 71
Shewanella amazonensis SB2B 0.50 Sama_2726 5-formyltetrahydrofolate cyclo-ligase family protein (RefSeq) 0.63 Sama_0963 pseudouridylate synthase (RefSeq) low > 62
Dickeya dianthicola ME23 0.50 DZA65_RS02475 5-formyltetrahydrofolate cyclo-ligase 0.69 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB low > 75
Pantoea sp. MT58 0.50 IAI47_03730 5-formyltetrahydrofolate cyclo-ligase 0.67 IAI47_17015 tRNA pseudouridine(55) synthase TruB low > 76
Klebsiella michiganensis M5al 0.49 BWI76_RS23915 5-formyltetrahydrofolate cyclo-ligase 0.68 BWI76_RS25080 tRNA pseudouridine(55) synthase low > 92
Shewanella loihica PV-4 0.46 Shew_3069 5-formyltetrahydrofolate cyclo-ligase (RefSeq) 0.64 Shew_2825 tRNA pseudouridine synthase B (RefSeq) low > 60
Marinobacter adhaerens HP15 0.34 HP15_3211 5-formyltetrahydrofolate cyclo-ligase 0.46 HP15_3065 tRNA pseudouridine synthase B low > 73
Pseudomonas segetis P6 0.32 ACVTMO_RS22290 5-formyltetrahydrofolate cyclo-ligase 0.44 ACVTMO_RS05965 truB tRNA pseudouridine(55) synthase TruB low > 75
Pseudomonas aeruginosa MRSN321 0.32 DY961_RS12015 5-formyltetrahydrofolate cyclo-ligase 0.43 DY961_RS09455 truB;go_function=pseudouridylate tRNA pseudouridine(55) synthase TruB low > 100
Pseudomonas aeruginosa PA14 0.32 IKLFDK_27325 5-formyltetrahydrofolate cyclo-ligase 0.43 IKLFDK_29890 tRNA pseudouridine(55) synthase TruB low > 98
Pseudomonas aeruginosa PUPa3 0.32 DQ20_RS50105 5-formyltetrahydrofolate cyclo-ligase 0.43 DQ20_RS52580 truB;go_function=pseudouridylate tRNA pseudouridine(55) synthase TruB low > 101
Pseudomonas stutzeri RCH2 0.31 Psest_0170 5,10-methenyltetrahydrofolate synthetase 0.46 Psest_0983 tRNA pseudouridine 55 synthase — —
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_08780 5-formyltetrahydrofolate cyclo-ligase 0.45 AO353_05550 pseudouridine synthase low > 101
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_0528 5-formyltetrahydrofolate cyclo-ligase 0.50 B158DRAFT_0108 tRNA pseudouridine 55 synthase low > 40
Pseudomonas lactucae CFBP13502 0.30 GEMAOFIL_05599 5-formyltetrahydrofolate cyclo-ligase 0.44 GEMAOFIL_04943 tRNA pseudouridine synthase B low > 96
Pseudomonas sp. BP01 0.29 JOY50_RS22470 5-formyltetrahydrofolate cyclo-ligase 0.46 JOY50_RS26845 truB tRNA pseudouridine(55) synthase TruB low > 84
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_0317 5-formyltetrahydrofolate cyclo-ligase 0.46 Psyr_4178 tRNA pseudouridine synthase B low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_0317 5-formyltetrahydrofolate cyclo-ligase 0.46 Psyr_4178 tRNA pseudouridine synthase B low > 86
Pseudomonas putida KT2440 0.29 PP_5203 5-formyltetrahydrofolate cyclo-ligase 0.46 PP_4710 tRNA pseudouridine 55 synthase low > 96
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS28965 5-formyltetrahydrofolate cyclo-ligase 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas simiae WCS417 0.28 PS417_27305 5-formyltetrahydrofolate cyclo-ligase 0.44 PS417_23960 pseudouridine synthase — —
Pseudomonas fluorescens SBW25 0.28 PFLU_RS28965 5-formyltetrahydrofolate cyclo-ligase 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas orientalis W4I3 0.28 QF045_RS01680 5-formyltetrahydrofolate cyclo-ligase 0.43 QF045_RS26215 tRNA pseudouridine(55) synthase TruB low > 93
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_4476 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.45 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 103
Pseudomonas sp. S08-1 0.27 OH686_11225 5-formyltetrahydrofolate cyclo-ligase 0.44 OH686_17155 tRNA pseudouridine(55) synthase low > 80
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_12990 5-formyltetrahydrofolate cyclo-ligase 0.44 AO356_07400 pseudouridine synthase low > 104
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_2225 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.45 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Acinetobacter radioresistens SK82 0.27 MPMX26_02298 5-formyltetrahydrofolate cyclo-ligase 0.38 MPMX26_02778 tRNA pseudouridine synthase B low > 36
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_892 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.45 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas sp. RS175 0.26 PFR28_04325 5-formyltetrahydrofolate cyclo-ligase 0.45 PFR28_00092 tRNA pseudouridine synthase B — —
Pseudomonas sp. SVBP6 0.26 COO64_RS01015 5-formyltetrahydrofolate cyclo-ligase 0.44 COO64_RS15160 truB tRNA pseudouridine(55) synthase TruB low > 93
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS11670 5-formyltetrahydrofolate cyclo-ligase 0.35 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB low > 59
Rhodanobacter denitrificans MT42 0.26 LRK55_RS11395 5-formyltetrahydrofolate cyclo-ligase 0.35 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB low > 63
Pseudomonas sp. DMC3 0.26 GFF320 5-formyltetrahydrofolate cyclo-ligase 0.46 GFF4990 tRNA pseudouridine synthase B low > 89
Rhodanobacter sp. FW510-T8 0.26 OKGIIK_12225 5-formyltetrahydrofolate cyclo-ligase 0.35 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB low > 53
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.1138.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.34 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 74
Lysobacter sp. OAE881 0.24 ABIE51_RS17355 5-formyltetrahydrofolate cyclo-ligase 0.36 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB low > 62
Acinetobacter baumannii LAC-4 0.24 RR41_RS09105 5-formyltetrahydrofolate cyclo-ligase 0.40 RR41_RS01740 tRNA pseudouridine(55) synthase TruB — —
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS11995 5-formyltetrahydrofolate cyclo-ligase 0.31 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB low > 74
Sphingobium sp. HT1-2 0.23 GFF2137 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.24 GFF2345 tRNA pseudouridine(55) synthase (EC 5.4.99.25) low > 95
Agrobacterium fabrum C58 0.21 Atu3731 5-formyltetrahydrofolate cyclo-ligase 0.29 Atu0085 tRNA pseudouridine 55 synthase low > 89
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_03354 5-formyltetrahydrofolate cyclo-ligase 0.31 CCNA_00035 tRNA pseudouridine synthase B low > 67
Caulobacter crescentus NA1000 0.21 CCNA_03354 5-formyltetrahydrofolate cyclo-ligase 0.31 CCNA_00035 tRNA pseudouridine synthase B low > 66
Rhodanobacter sp000427505 FW510-R12 0.21 LRK53_RS16890 5-formyltetrahydrofolate cyclo-ligase 0.36 LRK53_RS09080 tRNA pseudouridine(55) synthase TruB low > 59
Rhodopseudomonas palustris CGA009 0.18 TX73_023120 5-formyltetrahydrofolate cyclo-ligase 0.33 TX73_002255 tRNA pseudouridine(55) synthase TruB low > 86
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_0735 5,10-methenyltetrahydrofolate synthetase 0.25 Ga0059261_2142 tRNA pseudouridine(55) synthase low > 68
Magnetospirillum magneticum AMB-1 0.16 AMB_RS16280 5-formyltetrahydrofolate cyclo-ligase 0.29 AMB_RS20810 tRNA pseudouridine(55) synthase TruB low > 64
Bosea sp. OAE506 0.16 ABIE41_RS09445 5-formyltetrahydrofolate cyclo-ligase 0.30 ABIE41_RS04565 tRNA pseudouridine(55) synthase TruB low > 77
Ralstonia sp. UNC404CL21Col 0.16 ABZR87_RS04880 5-formyltetrahydrofolate cyclo-ligase 0.39 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB low > 80
Ralstonia solanacearum PSI07 0.16 RPSI07_RS23505 5-formyltetrahydrofolate cyclo-ligase 0.40 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB low > 81
Ralstonia solanacearum IBSBF1503 0.16 RALBFv3_RS09865 5-formyltetrahydrofolate cyclo-ligase 0.40 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB low > 76
Ralstonia solanacearum UW163 0.16 UW163_RS03715 5-formyltetrahydrofolate cyclo-ligase 0.40 UW163_RS13150 tRNA pseudouridine(55) synthase TruB — —
Fusobacterium nucleatum SB010 0.15 HUW76_05675 5-formyltetrahydrofolate cyclo-ligase 0.26 HUW76_06175 tRNA pseudouridine(55) synthase TruB low > 35
Azospirillum sp. SherDot2 0.15 MPMX19_00693 5-formyltetrahydrofolate cyclo-ligase 0.33 MPMX19_02524 tRNA pseudouridine synthase B low > 112
Cupriavidus basilensis FW507-4G11 0.14 RR42_RS01400 5-formyltetrahydrofolate cyclo-ligase 0.40 RR42_RS12835 tRNA pseudouridine synthase B low > 128
Phaeobacter inhibens DSM 17395 0.14 PGA1_c21820 5-formyltetrahydrofolate cycloligase-like protein 0.29 PGA1_c32950 tRNA pseudouridine synthase B 0.34 29
Ralstonia solanacearum GMI1000 0.14 RS_RS00450 5-formyltetrahydrofolate cyclo-ligase 0.41 RS_RS06470 tRNA pseudouridine(55) synthase TruB low > 80
Synechococcus elongatus PCC 7942 0.14 Synpcc7942_1300 hypothetical protein 0.20 Synpcc7942_1222 truB tRNA pseudouridine synthase B low > 38
Synechocystis sp000284455 PCC 6803 0.14 SGL_RS04360 5-formyltetrahydrofolate cyclo-ligase 0.23 SGL_RS18050 tRNA pseudouridine(55) synthase TruB low > 52

Not shown: 15 genomes with orthologs for CSW01_12545 only; 15 genomes with orthologs for CSW01_03400 only