Conservation of cofitness between CSW01_12240 and CSW01_02460 in Vibrio cholerae E7946 ATCC 55056

83 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12240 single-stranded-DNA-specific exonuclease RecJ 1.0 CSW01_02460 type IV pili twitching motility protein PilT 0.64 4
Pantoea sp. MT58 0.64 IAI47_03830 single-stranded-DNA-specific exonuclease RecJ 0.44 IAI47_03600 type IV pilus twitching motility protein PilT low > 76
Escherichia coli ECRC62 0.64 BNILDI_10035 recJ single-stranded-DNA-specific exonuclease RecJ 0.45 BNILDI_09710 yggR Uncharacterized protein YggR low > 75
Escherichia coli BL21 0.64 ECD_02724 ssDNA exonuclease, 5 0.45 ECD_02780 putative PilT family AAA+ ATPase low > 61
Pantoea agglomerans CFBP13505 P0401 0.64 PagCFBP13505_RS15870 single-stranded-DNA-specific exonuclease RecJ 0.44 PagCFBP13505_RS16095 type IV pilus twitching motility protein PilT low > 74
Escherichia coli ECOR27 0.64 NOLOHH_11505 recJ single-stranded-DNA-specific exonuclease RecJ 0.45 NOLOHH_11130 yggR Uncharacterized protein YggR low > 76
Escherichia coli ECRC98 0.64 JDDGAC_23220 recJ single-stranded-DNA-specific exonuclease RecJ 0.45 JDDGAC_22890 yggR Uncharacterized protein YggR low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_00823 Single-stranded-DNA-specific exonuclease RecJ 0.44 OHPLBJKB_00766 putative protein YggR low > 74
Escherichia coli ECRC99 0.64 KEDOAH_08560 recJ single-stranded-DNA-specific exonuclease RecJ 0.45 KEDOAH_08880 yggR Uncharacterized protein YggR — —
Serratia liquefaciens MT49 0.64 IAI46_20720 single-stranded-DNA-specific exonuclease RecJ 0.48 IAI46_21405 type IV pilus twitching motility protein PilT low > 87
Escherichia coli ECRC102 0.64 NIAGMN_17345 recJ single-stranded-DNA-specific exonuclease RecJ 0.45 NIAGMN_17025 yggR Uncharacterized protein YggR low > 80
Escherichia coli ECRC100 0.64 OKFHMN_19580 recJ single-stranded-DNA-specific exonuclease RecJ 0.45 OKFHMN_19260 yggR Uncharacterized protein YggR low > 79
Escherichia coli ECRC101 0.64 MCAODC_10100 recJ single-stranded-DNA-specific exonuclease RecJ 0.45 MCAODC_09780 yggR Uncharacterized protein YggR low > 87
Escherichia fergusonii Becca 0.64 EFB2_01009 Single-stranded-DNA-specific exonuclease RecJ 0.45 EFB2_00952 putative protein YggR low > 86
Escherichia coli BW25113 0.63 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) 0.45 b2950 yggR putative protein transport (VIMSS) low > 76
Dickeya dadantii 3937 0.63 DDA3937_RS03310 single-stranded-DNA-specific exonuclease RecJ 0.47 DDA3937_RS17295 type IV pilus twitching motility protein PilT low > 74
Escherichia coli ECOR38 0.63 HEPCGN_18870 recJ single-stranded-DNA-specific exonuclease RecJ 0.45 HEPCGN_18565 yggR Uncharacterized protein YggR low > 88
Dickeya dianthicola 67-19 0.63 HGI48_RS03450 single-stranded-DNA-specific exonuclease RecJ 0.46 HGI48_RS17340 type IV pilus twitching motility protein PilT low > 71
Dickeya dianthicola ME23 0.63 DZA65_RS03495 single-stranded-DNA-specific exonuclease RecJ 0.46 DZA65_RS18430 type IV pilus twitching motility protein PilT low > 75
Escherichia coli Nissle 1917 0.63 ECOLIN_RS16115 single-stranded-DNA-specific exonuclease RecJ 0.45 ECOLIN_RS16410 type IV pilus twitching motility protein PilT low > 55
Klebsiella pneumoniae MKP103 0.63 KDGMDA_04290 single-stranded-DNA-specific exonuclease RecJ 0.46 KDGMDA_04610 twitching motility protein PilT low > 95
Enterobacter asburiae PDN3 0.63 EX28DRAFT_2943 single-stranded-DNA-specific exonuclease RecJ 0.45 EX28DRAFT_2988 pilus retraction protein PilT low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF2989 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.45 GFF3053 Twitching motility protein PilT low > 78
Erwinia amylovora T8 0.62 OLJFJH_08845 single-stranded-DNA-specific exonuclease RecJ 0.42 OLJFJH_08535 type IV pili twitching motility protein PilT low > 58
Rahnella sp. WP5 0.62 EX31_RS13470 single-stranded-DNA-specific exonuclease RecJ 0.44 EX31_RS02680 type IV pilus twitching motility protein PilT low > 89
Enterobacter sp. TBS_079 0.62 MPMX20_03751 Single-stranded-DNA-specific exonuclease RecJ 0.47 MPMX20_03808 putative protein YggR low > 85
Erwinia tracheiphila HP pepo 2.2 0.62 IJEDHG_03185 recJ single-stranded-DNA-specific exonuclease RecJ 0.45 IJEDHG_03445 type IV pili twitching motility protein PilT low > 61
Erwinia tracheiphila SCR3 0.62 LU632_RS05985 recJ single-stranded-DNA-specific exonuclease RecJ 0.20 LU632_RS25695 traJ plasmid transfer ATPase TraJ low > 73
Klebsiella michiganensis M5al 0.61 BWI76_RS23805 ssDNA exonuclease RecJ 0.44 BWI76_RS24095 twitching motility protein PilT low > 92
Pectobacterium carotovorum WPP14 0.60 HER17_RS17880 single-stranded-DNA-specific exonuclease RecJ 0.48 HER17_RS03815 type IV pilus twitching motility protein PilT low > 75
Shewanella loihica PV-4 0.60 Shew_0772 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.74 Shew_1138 twitching motility protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.59 Sama_2737 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.75 Sama_2476 twitching motility protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.58 Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.74 Shewana3_1195 pilus retraction ATPase PilT (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO0952 recJ single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) 0.74 SO3351 pilT twitching motility protein PilT (NCBI ptt file) 0.32 37
Pseudomonas sp. S08-1 0.58 OH686_06955 single-stranded-DNA-specific exonuclease RecJ 0.70 OH686_10970 Twitching motility protein PilT low > 80
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_1298 exonuclease RecJ 0.67 Psyr_0478 pilus retraction ATPase PilT low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_1298 exonuclease RecJ 0.67 Psyr_0478 pilus retraction ATPase PilT low > 86
Pseudomonas simiae WCS417 0.57 PS417_22855 ssDNA exonuclease RecJ 0.63 PS417_26720 twitching motility protein PilT low > 88
Pseudomonas fluorescens SBW25 0.57 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ 0.64 PFLU_RS28365 type IV pilus twitching motility protein PilT low > 109
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ 0.64 PFLU_RS28365 type IV pilus twitching motility protein PilT low > 109
Pseudomonas segetis P6 0.57 MPMX49_01597 Single-stranded-DNA-specific exonuclease RecJ 0.69 MPMX49_00612 Twitching mobility protein — —
Pseudomonas putida KT2440 0.57 PP_1477 ssDNA-specific exonuclease RecJ 0.50 PP_5093 twitching motility protein low > 96
Pseudomonas sp. BP01 0.57 JOY50_RS11745 recJ single-stranded-DNA-specific exonuclease RecJ 0.50 JOY50_RS20915 type IV pilus twitching motility protein PilT low > 84
Pseudomonas orientalis W4I3 0.57 QF045_RS25045 single-stranded-DNA-specific exonuclease RecJ 0.64 QF045_RS01120 type IV pilus twitching motility protein PilT low > 93
Pseudomonas aeruginosa PA14 0.57 IKLFDK_19015 single-stranded-DNA-specific exonuclease RecJ 0.69 IKLFDK_23445 type IV pilus twitching motility protein PilT low > 98
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_06345 single-stranded-DNA-specific exonuclease RecJ 0.69 AO356_13430 twitching motility protein PilT low > 104
Pseudomonas aeruginosa PUPa3 0.57 DQ20_RS42775 recJ;go_function=single-stranded single-stranded-DNA-specific exonuclease RecJ 0.69 DQ20_RS37345 pilT;inference=COORDINATES type IV pilus twitching motility protein PilT low > 101
Pseudomonas aeruginosa MRSN321 0.57 DY961_RS14350 recJ;go_function=single-stranded single-stranded-DNA-specific exonuclease RecJ 0.69 DY961_RS21955 pilT;inference=COORDINATES type IV pilus twitching motility protein PilT low > 100
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_3137 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.69 Pf6N2E2_4602 Twitching motility protein PilT low > 103
Pseudomonas sp. SVBP6 0.57 COO64_RS04980 recJ single-stranded-DNA-specific exonuclease RecJ 0.54 COO64_RS13005 type IV pilus twitching motility protein PilT low > 93
Pseudomonas sp. DMC3 0.56 GFF1996 Single-stranded-DNA-specific exonuclease RecJ 0.69 GFF208 Twitching mobility protein low > 89
Pseudomonas sp. RS175 0.56 PFR28_00339 Single-stranded-DNA-specific exonuclease RecJ 0.69 PFR28_04241 Twitching mobility protein low > 88
Pseudomonas fluorescens GW456-L13 0.56 PfGW456L13_1730 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.68 PfGW456L13_1012 Twitching motility protein PilT low > 87
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_3020 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.69 Pf1N1B4_2343 Twitching motility protein PilT low > 87
Pseudomonas lactucae CFBP13502 0.56 GEMAOFIL_04722 Single-stranded-DNA-specific exonuclease RecJ 0.65 GEMAOFIL_05481 Twitching mobility protein low > 96
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_04320 single-stranded-DNA-specific exonuclease RecJ 0.68 AO353_08155 twitching motility protein PilT low > 101
Pseudomonas stutzeri RCH2 0.55 Psest_1544 single-stranded-DNA-specific exonuclease RecJ 0.69 Psest_0285 pilus retraction protein PilT 0.22 52
Alteromonas macleodii MIT1002 0.52 MIT1002_00788 Single-stranded-DNA-specific exonuclease RecJ 0.72 MIT1002_03060 Twitching mobility protein low > 70
Marinobacter adhaerens HP15 0.50 HP15_766 bacterial RecJ exonuclease 0.68 HP15_289 twitching motility protein PilT low > 73
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_2268 single-stranded-DNA-specific exonuclease RecJ 0.70 B158DRAFT_0195 pilus retraction protein PilT low > 40
Dechlorosoma suillum PS 0.44 Dsui_2860 single-stranded-DNA-specific exonuclease RecJ 0.68 Dsui_0604 pilus retraction protein PilT — —
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2909.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.70 Xcc-8004.1713.1 Twitching motility protein PilT low > 74
Methylophilus sp. DMC18 0.43 GFF889 Single-stranded-DNA-specific exonuclease RecJ 0.68 GFF865 Twitching mobility protein low > 43
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS02800 single-stranded-DNA-specific exonuclease RecJ 0.71 ABZR86_RS10420 type IV pilus twitching motility protein PilT low > 74
Ralstonia solanacearum PSI07 0.43 RPSI07_RS18620 single-stranded-DNA-specific exonuclease RecJ 0.65 RPSI07_RS11730 type IV pili twitching motility protein PilT low > 81
Ralstonia solanacearum GMI1000 0.42 RS_RS05550 single-stranded-DNA-specific exonuclease RecJ 0.65 RS_RS13430 type IV pili twitching motility protein PilT low > 80
Ralstonia solanacearum UW163 0.42 UW163_RS12210 single-stranded-DNA-specific exonuclease RecJ 0.66 UW163_RS08055 type IV pili twitching motility protein PilT — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS14740 single-stranded-DNA-specific exonuclease RecJ 0.66 RALBFv3_RS05570 type IV pili twitching motility protein PilT low > 76
Acinetobacter radioresistens SK82 0.42 MPMX26_02917 Single-stranded-DNA-specific exonuclease RecJ 0.72 MPMX26_02405 Twitching mobility protein low > 36
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS06090 single-stranded DNA exonuclease 0.64 RR42_RS17350 twitching motility protein PilT low > 128
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS00315 single-stranded-DNA-specific exonuclease RecJ 0.69 LRK54_RS04255 type IV pilus twitching motility protein PilT low > 59
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_06995 recJ single-stranded-DNA-specific exonuclease RecJ 0.70 OKGIIK_11130 pilT twitching motility protein PilT low > 53
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS10395 single-stranded-DNA-specific exonuclease RecJ 0.66 ABZR87_RS01220 type IV pilus twitching motility protein PilT low > 80
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS13965 single-stranded DNA exonuclease 0.47 HSERO_RS19000 twitching motility protein PilT low > 78
Variovorax sp. OAS795 0.40 ABID97_RS22940 single-stranded-DNA-specific exonuclease RecJ 0.67 ABID97_RS00255 type IV pilus twitching motility protein PilT low > 91
Variovorax sp. SCN45 0.40 GFF6700 Single-stranded-DNA-specific exonuclease RecJ 0.67 GFF3743 Twitching motility protein PilT low > 127
Acidovorax sp. GW101-3H11 0.40 Ac3H11_1746 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.65 Ac3H11_4473 Twitching motility protein PilT — —
Rhodanobacter sp000427505 FW510-R12 0.40 LRK53_RS09835 DHHA1 domain-containing protein 0.69 LRK53_RS05685 type IV pilus twitching motility protein PilT low > 59
Acinetobacter baumannii LAC-4 0.40 RR41_RS00920 single-stranded-DNA-specific exonuclease RecJ 0.73 RR41_RS14800 type IV pilus twitching motility protein PilT low > 55
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF739 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.58 GFF2721 Twitching motility protein PilT — —
Rhodospirillum rubrum S1H 0.23 Rru_A2408 RecJ exonuclease (NCBI) 0.31 Rru_A0118 type II secretion system protein E (NCBI) — —
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_1134 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.48 DvMF_1038 twitching motility protein (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU0904 recJ single-stranded-DNA-specific exonuclease RecJ (TIGR) 0.50 DVU1262 pilT-1 twitching motility protein PilT (TIGR) low > 55
Rhodanobacter denitrificans MT42 0.19 LRK55_RS18310 DHHA1 domain-containing protein 0.69 LRK55_RS04025 type IV pilus twitching motility protein PilT low > 63

Not shown: 27 genomes with orthologs for CSW01_12240 only; 4 genomes with orthologs for CSW01_02460 only