Conservation of cofitness between CSW01_06565 and CSW01_01045 in Vibrio cholerae E7946 ATCC 55056

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06565 L-serine ammonia-lyase 1.0 CSW01_01045 DNA helicase RecQ 0.50 1
Klebsiella michiganensis M5al 0.77 BWI76_RS17875 L-serine ammonia-lyase 0.66 BWI76_RS01245 DNA helicase RecQ low > 92
Escherichia coli Nissle 1917 0.77 ECOLIN_RS10090 L-serine ammonia-lyase 0.67 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ — —
Escherichia coli BL21 0.77 ECD_01784 L-serine dehydratase 1 0.66 ECD_03701 ATP-dependent DNA helicase low > 61
Escherichia coli BW25113 0.77 b1814 sdaA L-serine deaminase I (NCBI) 0.67 b3822 recQ ATP-dependent DNA helicase (NCBI) low > 76
Escherichia fergusonii Becca 0.77 EFB2_02186 L-serine dehydratase 1 0.67 EFB2_04815 ATP-dependent DNA helicase RecQ low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_01917 L-serine dehydratase 1 0.67 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ low > 74
Escherichia coli ECRC98 0.77 JDDGAC_01125 sdaA L-serine ammonia-lyase 0.67 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 0.31 67
Escherichia coli ECRC62 0.77 BNILDI_15855 sdaA L-serine ammonia-lyase 0.67 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ low > 75
Escherichia coli ECRC101 0.77 MCAODC_18860 sdaA L-serine ammonia-lyase 0.67 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ low > 87
Escherichia coli ECOR38 0.77 HEPCGN_04940 sdaA L-serine ammonia-lyase 0.67 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ low > 88
Escherichia coli ECRC99 0.77 KEDOAH_01560 sdaA L-serine ammonia-lyase 0.67 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC100 0.77 OKFHMN_26550 sdaA L-serine ammonia-lyase 0.67 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ low > 79
Escherichia coli ECRC102 0.77 NIAGMN_01515 sdaA L-serine ammonia-lyase 0.67 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ low > 80
Serratia liquefaciens MT49 0.77 IAI46_14795 L-serine ammonia-lyase 0.66 IAI46_00770 ATP-dependent DNA helicase RecQ low > 87
Escherichia coli ECOR27 0.77 NOLOHH_17070 sdaA L-serine ammonia-lyase 0.67 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ low > 76
Klebsiella pneumoniae MKP103 0.77 KDGMDA_25160 L-serine ammonia-lyase 0.67 KDGMDA_09735 ATP-dependent DNA helicase RecQ low > 95
Enterobacter sp. TBS_079 0.76 MPMX20_02719 L-serine dehydratase 1 0.66 MPMX20_04458 ATP-dependent DNA helicase RecQ low > 85
Enterobacter asburiae PDN3 0.76 EX28DRAFT_0745 L-serine dehydratase, iron-sulfur-dependent, single chain form 0.66 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ low > 76
Pectobacterium carotovorum WPP14 0.76 HER17_RS11315 L-serine ammonia-lyase 0.65 HER17_RS01395 ATP-dependent DNA helicase RecQ low > 75
Erwinia tracheiphila SCR3 0.76 LU632_RS13185 sdaA L-serine ammonia-lyase 0.66 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ low > 73
Erwinia tracheiphila HP pepo 2.2 0.75 IJEDHG_22400 L-serine ammonia-lyase 0.66 IJEDHG_08740 recQ ATP-dependent DNA helicase RecQ low > 61
Dickeya dadantii 3937 0.75 DDA3937_RS11265 L-serine ammonia-lyase 0.66 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.46 69
Rahnella sp. WP5 0.75 EX31_RS24715 L-serine ammonia-lyase 0.65 EX31_RS15210 ATP-dependent DNA helicase RecQ low > 89
Pantoea agglomerans CFBP13505 P0401 0.75 PagCFBP13505_RS02615 L-serine ammonia-lyase 0.66 PagCFBP13505_RS15340 ATP-dependent DNA helicase RecQ low > 74
Pantoea sp. MT58 0.74 IAI47_08785 L-serine ammonia-lyase 0.67 IAI47_18360 ATP-dependent DNA helicase RecQ low > 76
Dickeya dianthicola ME23 0.74 DZA65_RS11645 L-serine ammonia-lyase 0.66 DZA65_RS21045 ATP-dependent DNA helicase RecQ low > 75
Erwinia amylovora T8 0.74 OLJFJH_13055 L-serine ammonia-lyase 0.66 OLJFJH_06445 ATP-dependent DNA helicase RecQ low > 58
Dickeya dianthicola 67-19 0.74 HGI48_RS11300 L-serine ammonia-lyase 0.66 HGI48_RS20005 ATP-dependent DNA helicase RecQ low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF2828 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) 0.65 GFF248 ATP-dependent DNA helicase RecQ low > 78
Shewanella loihica PV-4 0.70 Shew_0740 L-serine dehydratase 1 (RefSeq) 0.58 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) low > 60
Shewanella amazonensis SB2B 0.65 Sama_2771 L-serine ammonia-lyase (RefSeq) 0.57 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) low > 62
Shewanella sp. ANA-3 0.55 Shewana3_2295 L-serine ammonia-lyase (RefSeq) 0.59 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) low > 73
Shewanella oneidensis MR-1 0.55 SO2248 sdaA L-serine dehydratase 1 (NCBI ptt file) 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.54 MIT1002_02006 L-serine dehydratase 1 0.54 MIT1002_00148 ATP-dependent DNA helicase RecQ low > 70
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.1601.1 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) 0.44 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ low > 74
Pseudomonas sp. SVBP6 0.50 COO64_RS04445 L-serine ammonia-lyase 0.46 COO64_RS21845 recQ DNA helicase RecQ low > 93
Pseudomonas sp. RS175 0.50 PFR28_03384 L-serine dehydratase 2 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ low > 88
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_622 L-serine dehydratase (EC 4.3.1.17) 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ low > 87
Pseudomonas sp. S08-1 0.50 OH686_16810 L-serine ammonia-lyase 0.45 OH686_20670 ATP-dependent DNA helicase RecQ low > 80
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS29225 L-serine ammonia-lyase 0.43 QEN71_RS28295 DNA helicase RecQ low > 153
Ralstonia solanacearum PSI07 0.50 RPSI07_RS08570 L-serine ammonia-lyase 0.42 RPSI07_RS10025 DNA helicase RecQ low > 81
Pseudomonas aeruginosa PUPa3 0.50 DQ20_RS59890 L-serine ammonia-lyase 0.45 DQ20_RS40870 recQ;go_function=DNA DNA helicase RecQ low > 101
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_18165 serine dehydratase 0.45 AO356_04050 ATP-dependent DNA helicase RecQ low > 104
Pseudomonas segetis P6 0.50 ACVTMO_RS17910 L-serine ammonia-lyase 0.45 ACVTMO_RS14555 recQ DNA helicase RecQ low > 75
Pseudomonas fluorescens SBW25-INTG 0.50 PFLU_RS24005 L-serine ammonia-lyase 0.44 PFLU_RS21920 DNA helicase RecQ low > 109
Acidovorax sp. GW101-3H11 0.50 Ac3H11_929 L-serine ammonia-lyase (EC 4.3.1.17) (from data) 0.41 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.18 50
Pseudomonas fluorescens SBW25 0.50 PFLU_RS24005 L-serine ammonia-lyase 0.44 PFLU_RS21920 DNA helicase RecQ low > 109
Pseudomonas aeruginosa MRSN321 0.50 DY961_RS18680 L-serine ammonia-lyase 0.45 DY961_RS00140 recQ;go_function=DNA DNA helicase RecQ low > 100
Pseudomonas fluorescens FW300-N2E2 0.50 Pf6N2E2_5557 L-serine ammonia-lyase (EC 4.3.1.17) (from data) 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ low > 103
Pseudomonas simiae WCS417 0.50 PS417_22365 serine dehydratase 0.44 PS417_19950 ATP-dependent DNA helicase RecQ low > 88
Pseudomonas aeruginosa PA14 0.50 IKLFDK_12010 L-serine ammonia-lyase 0.45 IKLFDK_17145 DNA helicase RecQ low > 98
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_1867 L-serine dehydratase (EC 4.3.1.17) 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ low > 87
Pseudomonas lactucae CFBP13502 0.50 GEMAOFIL_04609 L-serine dehydratase 2 0.44 GEMAOFIL_04187 ATP-dependent DNA helicase RecQ low > 96
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_03505 serine dehydratase 0.44 AO353_18430 ATP-dependent DNA helicase RecQ low > 101
Pseudomonas sp. BP01 0.50 JOY50_RS11295 L-serine ammonia-lyase 0.44 JOY50_RS01155 recQ DNA helicase RecQ 0.28 84
Pseudomonas orientalis W4I3 0.49 QF045_RS24490 L-serine ammonia-lyase 0.44 QF045_RS22070 DNA helicase RecQ low > 93
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_02407 L-serine ammonia-lyase 0.42 H281DRAFT_06595 ATP-dependent DNA helicase RecQ — —
Paraburkholderia graminis OAS925 0.49 ABIE53_000240 L-serine dehydratase 0.43 ABIE53_003792 ATP-dependent DNA helicase RecQ low > 113
Pseudomonas stutzeri RCH2 0.49 Psest_0784 L-serine dehydratase, iron-sulfur-dependent, single chain form 0.44 Psest_1869 ATP-dependent DNA helicase RecQ low > 67
Pseudomonas sp. DMC3 0.49 GFF5170 L-serine dehydratase 2 0.44 GFF2380 ATP-dependent DNA helicase RecQ low > 89
Pseudomonas putida KT2440 0.49 PP_0987 L-serine dehydratase 0.44 PP_4516 ATP-dependent DNA 3 low > 96
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS19340 L-serine ammonia-lyase (EC 4.3.1.17) (from data) 0.43 BPHYT_RS18145 ATP-dependent DNA helicase RecQ low > 109
Ralstonia solanacearum GMI1000 0.49 RS_RS17410 L-serine ammonia-lyase 0.42 RS_RS15155 DNA helicase RecQ low > 80
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS03940 L-serine ammonia-lyase 0.42 ABZR87_RS02880 DNA helicase RecQ low > 80
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS08665 L-serine ammonia-lyase 0.42 RALBFv3_RS07220 DNA helicase RecQ low > 76
Ralstonia solanacearum UW163 0.49 UW163_RS04945 L-serine ammonia-lyase 0.42 UW163_RS06400 DNA helicase RecQ — —
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS20080 L-serine ammonia-lyase (EC 4.3.1.17) (from data) 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ low > 128
Pseudomonas syringae pv. syringae B728a ΔmexB 0.48 Psyr_3522 L-serine ammonia-lyase 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ low > 86
Pseudomonas syringae pv. syringae B728a 0.48 Psyr_3522 L-serine ammonia-lyase 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ low > 86
Castellaniella sp019104865 MT123 0.45 ABCV34_RS14845 L-serine ammonia-lyase 0.40 ABCV34_RS07985 DNA helicase RecQ low > 48
Cellulophaga baltica 18 0.45 M666_RS13630 L-serine ammonia-lyase 0.39 M666_RS16920 DNA helicase RecQ low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS18475 L-serine ammonia-lyase 0.42 ABZR88_RS20865 DNA helicase RecQ low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.43 CA265_RS21785 L-serine ammonia-lyase 0.36 CA265_RS08905 DNA helicase RecQ low > 88
Sphingomonas koreensis DSMZ 15582 0.42 Ga0059261_0220 L-serine dehydratase, iron-sulfur-dependent, single chain form 0.37 Ga0059261_2261 ATP-dependent DNA helicase RecQ low > 68
Sphingobium sp. HT1-2 0.42 GFF2247 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) 0.38 GFF798 ATP-dependent DNA helicase RecQ low > 95
Bacteroides thetaiotaomicron VPI-5482 0.31 BT4678 L-serine dehydratase (NCBI ptt file) 0.39 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) low > 81
Phocaeicola vulgatus CL09T03C04 0.31 HMPREF1058_RS16410 L-serine ammonia-lyase 0.41 HMPREF1058_RS14585 DNA helicase RecQ low > 67
Phocaeicola dorei CL03T12C01 0.30 ABI39_RS12245 L-serine ammonia-lyase 0.41 ABI39_RS10235 DNA helicase RecQ low > 72
Bacteroides ovatus ATCC 8483 0.30 BACOVA_05536 L-serine ammonia-lyase 0.38 BACOVA_04594 ATP-dependent DNA helicase RecQ low > 96
Fusobacterium nucleatum SB010 0.29 HUW76_06645 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha 0.35 HUW76_07235 DNA helicase RecQ low > 35
Bacteroides stercoris CC31F 0.29 HMPREF1181_RS11755 L-serine ammonia-lyase 0.40 HMPREF1181_RS14110 DNA helicase RecQ low > 56
Parabacteroides merdae CL09T00C40 0.28 HMPREF1078_RS01410 L-serine ammonia-lyase 0.40 HMPREF1078_RS01195 DNA helicase RecQ low > 61

Not shown: 2 genomes with orthologs for CSW01_06565 only; 31 genomes with orthologs for CSW01_01045 only