Conservation of cofitness between CSW01_06080 and CSW01_00225 in Vibrio cholerae E7946 ATCC 55056

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06080 histidine ammonia-lyase 1.0 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 14
Shewanella sp. ANA-3 0.74 Shewana3_0101 histidine ammonia-lyase (RefSeq) 0.51 Shewana3_0033 sun protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.74 SO0098 hutH histidine ammonia-lyase (NCBI ptt file) 0.51 SO0030 sun sun protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.73 Shew_3756 histidine ammonia-lyase (RefSeq) 0.51 Shew_3738 sun protein (RefSeq) low > 60
Serratia liquefaciens MT49 0.72 IAI46_03660 histidine ammonia-lyase 0.59 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Acinetobacter baumannii LAC-4 0.71 RR41_RS00385 histidine ammonia-lyase 0.36 RR41_RS00120 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 55
Enterobacter asburiae PDN3 0.71 EX28DRAFT_2219 histidine ammonia-lyase (EC 4.3.1.3) 0.57 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 76
Pseudomonas simiae WCS417 0.71 PS417_01750 histidine ammonia-lyase 0.43 PS417_00085 16S rRNA methyltransferase low > 88
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS01805 histidine ammonia-lyase 0.43 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.18 78
Pseudomonas fluorescens SBW25 0.70 PFLU_RS01805 histidine ammonia-lyase 0.43 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Enterobacter sp. TBS_079 0.70 MPMX20_01400 Histidine ammonia-lyase 0.56 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B low > 85
Pseudomonas sp. S08-1 0.70 OH686_16755 histidine ammonia-lyase 0.43 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 80
Alteromonas macleodii MIT1002 0.70 MIT1002_00905 Histidine ammonia-lyase 0.49 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B 0.46 56
Pseudomonas segetis P6 0.70 MPMX49_03960 Histidine ammonia-lyase 0.43 MPMX49_00273 Ribosomal RNA small subunit methyltransferase B low > 75
Pseudomonas sp. BP01 0.70 JOY50_RS09525 hutH histidine ammonia-lyase 0.44 JOY50_RS08250 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 84
Pseudomonas lactucae CFBP13502 0.70 GEMAOFIL_00574 Histidine ammonia-lyase 0.43 GEMAOFIL_00223 Ribosomal RNA small subunit methyltransferase B low > 93
Pseudomonas putida KT2440 0.70 PP_5032 Histidine ammonia-lyase 0.45 PP_0066 Ribosomal RNA small subunit methyltransferase B low > 96
Pseudomonas sp. DMC3 0.70 GFF4056 Histidine ammonia-lyase 0.45 GFF590 Ribosomal RNA small subunit methyltransferase B low > 89
Cupriavidus basilensis FW507-4G11 0.70 RR42_RS14640 histidine ammonia-lyase 0.28 RR42_RS20450 16S rRNA methyltransferase low > 128
Klebsiella pneumoniae MKP103 0.69 KDGMDA_17005 histidine ammonia-lyase 0.60 KDGMDA_06550 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 95
Pseudomonas syringae pv. syringae B728a ΔmexB 0.69 Psyr_4833 histidine ammonia-lyase 0.44 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas fluorescens GW456-L13 0.69 PfGW456L13_320 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.44 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_1581 Histidine ammonia-lyase (EC 4.3.1.3) 0.44 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Pseudomonas syringae pv. syringae B728a 0.69 Psyr_4833 histidine ammonia-lyase 0.44 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas fluorescens FW300-N2C3 0.69 AO356_09600 histidine ammonia-lyase 0.44 AO356_11275 16S rRNA methyltransferase 0.30 69
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_3799 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.44 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 103
Klebsiella michiganensis M5al 0.69 BWI76_RS08740 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.58 BWI76_RS25680 16S rRNA m5C967 methyltransferase low > 92
Pseudomonas aeruginosa PA14 0.69 IKLFDK_28030 histidine ammonia-lyase 0.44 IKLFDK_25475 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 100
Pseudomonas sp. RS175 0.69 PFR28_04971 Histidine ammonia-lyase 0.44 PFR28_04663 Ribosomal RNA small subunit methyltransferase B low > 88
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_12270 histidine ammonia-lyase 0.44 AO353_10630 16S rRNA methyltransferase low > 101
Pseudomonas sp. SVBP6 0.68 COO64_RS13415 hutH histidine ammonia-lyase 0.43 COO64_RS02215 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 93
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF668 Histidine ammonia-lyase (EC 4.3.1.3) 0.60 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 low > 78
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_1432 histidine ammonia-lyase (EC 4.3.1.3) 0.40 B158DRAFT_0396 ribosomal RNA small subunit methyltransferase RsmB low > 40
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS07555 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.31 BPHYT_RS01475 16S rRNA methyltransferase low > 109
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS01025 histidine ammonia-lyase 0.31 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Rahnella sp. WP5 0.56 EX31_RS06755 histidine ammonia-lyase 0.57 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 89
Rhodanobacter sp000427505 FW510-R12 0.56 LRK53_RS08105 histidine ammonia-lyase 0.32 LRK53_RS02905 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 59
Ralstonia solanacearum GMI1000 0.55 RS_RS13250 histidine ammonia-lyase 0.30 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Ralstonia solanacearum UW163 0.55 UW163_RS08235 histidine ammonia-lyase 0.30 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS05390 histidine ammonia-lyase 0.30 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Ralstonia solanacearum PSI07 0.55 RPSI07_RS11915 histidine ammonia-lyase 0.31 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 81
Erwinia amylovora T8 0.55 OLJFJH_16540 histidine ammonia-lyase 0.56 OLJFJH_03720 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 58
Rhodospirillum rubrum S1H 0.55 Rru_A1301 Histidine ammonia-lyase (NCBI) 0.21 Rru_A3660 tRNA and rRNA cytosine-C5-methylase (NCBI) low > 58
Hydrogenophaga sp. GW460-11-11-14-LB1 0.55 GFF3589 Histidine ammonia-lyase (EC 4.3.1.3) 0.33 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) — —
Dickeya dadantii 3937 0.54 DDA3937_RS14995 histidine ammonia-lyase 0.58 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Variovorax sp. OAS795 0.54 ABID97_RS03420 histidine ammonia-lyase 0.27 ABID97_RS05360 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 91
Dickeya dianthicola 67-19 0.54 HGI48_RS15090 histidine ammonia-lyase 0.58 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.38 55
Dickeya dianthicola ME23 0.54 DZA65_RS15835 histidine ammonia-lyase 0.58 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Pantoea sp. MT58 0.53 IAI47_13275 histidine ammonia-lyase 0.57 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Brevundimonas sp. GW460-12-10-14-LB2 0.53 A4249_RS06630 histidine ammonia-lyase 0.19 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 48
Azospirillum sp. SherDot2 0.53 MPMX19_04940 Histidine ammonia-lyase 0.25 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B low > 112
Variovorax sp. SCN45 0.53 GFF6409 Histidine ammonia-lyase (EC 4.3.1.3) 0.27 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) low > 127
Pantoea agglomerans CFBP13505 P0401 0.53 PagCFBP13505_RS04045 histidine ammonia-lyase 0.56 PagCFBP13505_RS22525 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Acidovorax sp. GW101-3H11 0.53 Ac3H11_2558 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.30 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 79
Castellaniella sp019104865 MT123 0.51 ABCV34_RS12780 histidine ammonia-lyase 0.34 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 48
Rhizobium sp. OAE497 0.50 ABIE40_RS20355 histidine ammonia-lyase 0.22 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 107
Sphingobium sp. HT1-2 0.50 GFF1212 Histidine ammonia-lyase (EC 4.3.1.3) 0.17 GFF3272 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) low > 95
Sphingomonas koreensis DSMZ 15582 0.49 Ga0059261_3963 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.16 Ga0059261_2239 tRNA and rRNA cytosine-C5-methylases low > 68
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.3296.1 Histidine ammonia-lyase (EC 4.3.1.3) 0.35 Xcc-8004.4741.1 hypothetical protein low > 74
Sinorhizobium meliloti 1021 0.49 SM_b21165 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.21 SMc04090 sun protein low > 103
Agrobacterium fabrum C58 0.47 Atu3933 histidine ammonia-lyase 0.21 Atu2825 Sun protein low > 89
Phaeobacter inhibens DSM 17395 0.46 PGA1_c36340 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.19 PGA1_c32880 putative ribosomal RNA small subunit methyltransferase B 0.23 46
Fusobacterium nucleatum SB010 0.39 HUW76_04780 histidine ammonia-lyase 0.21 HUW76_07955 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 35
Shewanella amazonensis SB2B 0.38 Sama_1631 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.53 Sama_0041 sun protein (RefSeq) low > 62
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS01300 aromatic amino acid ammonia-lyase 0.34 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 59
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_05610 hutH histidine ammonia-lyase 0.36 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 52
Rhodanobacter denitrificans MT42 0.30 LRK55_RS01065 aromatic amino acid lyase 0.33 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 63
Lysobacter sp. OAE881 0.29 ABIE51_RS13345 aromatic amino acid lyase 0.38 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS22680 histidine ammonia-lyase 0.29 HSERO_RS00355 methyltransferase low > 78
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS06750 histidine ammonia-lyase 0.36 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Pseudomonas stutzeri RCH2 0.22 Psest_3695 Histidine ammonia-lyase 0.48 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB low > 67
Escherichia coli ECOR38 0.21 HEPCGN_01360 histidine ammonia-lyase 0.61 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 88

Not shown: 17 genomes with orthologs for CSW01_06080 only; 29 genomes with orthologs for CSW01_00225 only