| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_00205 | | hemolysin III family protein | 1.0 | CSW01_00225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.57 | 3 |
| Enterobacter asburiae PDN3 | 0.76 | EX28DRAFT_2950 | | channel protein, hemolysin III family | 0.57 | EX28DRAFT_0039 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase | low | > 76 |
| Enterobacter sp. TBS_079 | 0.76 | MPMX20_03758 | | hypothetical protein | 0.56 | MPMX20_04196 | | Ribosomal RNA small subunit methyltransferase B | low | > 85 |
| Klebsiella michiganensis M5al | 0.76 | BWI76_RS23840 | | hemolysin III family protein | 0.58 | BWI76_RS25680 | | 16S rRNA m5C967 methyltransferase | low | > 92 |
| Klebsiella pneumoniae MKP103 | 0.76 | KDGMDA_04325 | | hemolysin III family protein | 0.60 | KDGMDA_06550 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 95 |
| Dickeya dadantii 3937 | 0.74 | DDA3937_RS03270 | | hemolysin III family protein | 0.58 | DDA3937_RS19135 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.74 | GFF2997 | | COG1272: Predicted membrane protein hemolysin III homolog | 0.60 | GFF2390 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 | low | > 78 |
| Escherichia coli BL21 | 0.73 | ECD_02731 | | hemolysin III family HylIII inner membrane protein | 0.61 | ECD_03139 | | 16S rRNA m(5)C967 methyltransferase, SAM-dependent | low | > 61 |
| Escherichia fergusonii Becca | 0.73 | EFB2_01002 | | hypothetical protein | 0.61 | EFB2_00535 | | Ribosomal RNA small subunit methyltransferase B | low | > 86 |
| Escherichia coli ECOR27 | 0.73 | NOLOHH_11465 | yqfA | hemolysin III family protein | 0.61 | NOLOHH_09320 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 76 |
| Escherichia coli ECRC102 | 0.73 | NIAGMN_17310 | yqfA | hemolysin III family protein | 0.61 | NIAGMN_15290 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 80 |
| Escherichia coli Nissle 1917 | 0.73 | ECOLIN_RS16150 | | hemolysin III family protein | 0.61 | ECOLIN_RS18875 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 55 |
| Escherichia coli ECOR38 | 0.73 | HEPCGN_18835 | yqfA | hemolysin III family protein | 0.61 | HEPCGN_16350 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 88 |
| Escherichia coli ECRC98 | 0.73 | JDDGAC_23185 | yqfA | hemolysin III family protein | 0.61 | JDDGAC_21150 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 87 |
| Escherichia coli ECRC101 | 0.73 | MCAODC_10065 | yqfA | hemolysin III family protein | 0.61 | MCAODC_08050 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.73 | OHPLBJKB_00816 | | hypothetical protein | 0.61 | OHPLBJKB_00415 | | Ribosomal RNA small subunit methyltransferase B | low | > 74 |
| Escherichia coli ECRC62 | 0.73 | BNILDI_10000 | yqfA | hemolysin III family protein | 0.61 | BNILDI_02200 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 75 |
| Escherichia coli ECRC99 | 0.73 | KEDOAH_08595 | yqfA | hemolysin III family protein | 0.61 | KEDOAH_10620 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | — | — |
| Escherichia coli BW25113 | 0.73 | b2899 | yqfA | predicted oxidoreductase, inner membrane subunit (NCBI) | 0.61 | b3289 | rsmB | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) | low | > 76 |
| Escherichia coli ECRC100 | 0.73 | OKFHMN_19545 | yqfA | hemolysin III family protein | 0.61 | OKFHMN_17520 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 79 |
| Serratia liquefaciens MT49 | 0.72 | IAI46_20775 | | hemolysin III family protein | 0.59 | IAI46_23275 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 87 |
| Pantoea agglomerans CFBP13505 P0401 | 0.69 | PagCFBP13505_RS15905 | | hemolysin III family protein | 0.56 | PagCFBP13505_RS22525 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 74 |
| Rahnella sp. WP5 | 0.69 | EX31_RS21610 | | hemolysin III family protein | 0.57 | EX31_RS15985 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 89 |
| Dickeya dianthicola 67-19 | 0.68 | HGI48_RS03410 | | hemolysin III family protein | 0.58 | HGI48_RS19225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 71 |
| Pantoea sp. MT58 | 0.67 | IAI47_03795 | | hemolysin III family protein | 0.57 | IAI47_02280 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.20 | 38 |
| Dickeya dianthicola ME23 | 0.67 | DZA65_RS03455 | | hemolysin III family protein | 0.58 | DZA65_RS20350 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.64 | HER17_RS17935 | | hemolysin III family protein | 0.57 | HER17_RS02215 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 75 |
| Erwinia amylovora T8 | 0.64 | OLJFJH_08800 | | hemolysin III family protein | 0.56 | OLJFJH_03720 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 58 |
| Alteromonas macleodii MIT1002 | 0.52 | MIT1002_00886 | | hemolysin | 0.49 | MIT1002_00018 | | Ribosomal RNA small subunit methyltransferase B | low | > 70 |
| Shewanella oneidensis MR-1 | 0.48 | SO2447 | | channel protein, hemolysin III family subfamily (NCBI ptt file) | 0.51 | SO0030 | sun | sun protein (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.48 | Shew_2098 | | hemolysin III family channel protein (RefSeq) | 0.51 | Shew_3738 | | sun protein (RefSeq) | low | > 60 |
| Kangiella aquimarina DSM 16071 | 0.47 | B158DRAFT_1582 | | channel protein, hemolysin III family | 0.40 | B158DRAFT_0396 | | ribosomal RNA small subunit methyltransferase RsmB | low | > 40 |
| Shewanella sp. ANA-3 | 0.46 | Shewana3_1934 | | hemolysin III family channel protein (RefSeq) | 0.51 | Shewana3_0033 | | sun protein (RefSeq) | low | > 73 |
| Acinetobacter radioresistens SK82 | 0.45 | MPMX26_00606 | | hypothetical protein | 0.32 | MPMX26_03021 | | Ribosomal RNA small subunit methyltransferase B | low | > 36 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_00475 | yqfA | putative membrane channel-forming protein YqfA, hemolysin III family | 0.36 | OKGIIK_13790 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 53 |
| Rhodanobacter sp000427505 FW510-R12 | 0.45 | LRK53_RS17430 | | hemolysin III family protein | 0.32 | LRK53_RS02905 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS18160 | | hemolysin III family protein | 0.36 | ABZR86_RS13890 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 74 |
| Marinobacter adhaerens HP15 | 0.44 | HP15_2974 | | channel protein, hemolysin III family | 0.42 | HP15_3742 | | Fmu, rRNA SAM-dependent methyltransferase | low | > 73 |
| Shewanella amazonensis SB2B | 0.44 | Sama_1862 | | hemolysin III family channel protein (RefSeq) | 0.53 | Sama_0041 | | sun protein (RefSeq) | low | > 62 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS05890 | | hemolysin III family protein | 0.33 | LRK55_RS09765 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS06145 | | hemolysin III family protein | 0.34 | LRK54_RS10125 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 59 |
| Acinetobacter baumannii LAC-4 | 0.42 | RR41_RS03190 | | hemolysin III family protein | 0.36 | RR41_RS00120 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 55 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.40 | Xcc-8004.1589.1 | | COG1272: Predicted membrane protein hemolysin III homolog | 0.35 | Xcc-8004.4741.1 | | hypothetical protein | low | > 74 |
| Lysobacter sp. OAE881 | 0.39 | ABIE51_RS16230 | | hemolysin III family protein | 0.38 | ABIE51_RS02255 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 62 |
| Acidovorax sp. GW101-3H11 | 0.38 | Ac3H11_4296 | | COG1272: Predicted membrane protein hemolysin III homolog | 0.30 | Ac3H11_4461 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | low | > 79 |
| Burkholderia phytofirmans PsJN | 0.38 | BPHYT_RS16440 | | hemolysin D | 0.31 | BPHYT_RS01475 | | 16S rRNA methyltransferase | low | > 109 |
| Pseudomonas putida KT2440 | 0.37 | PP_4986 | | Channel protein, hemolysin III family | 0.45 | PP_0066 | | Ribosomal RNA small subunit methyltransferase B | low | > 96 |
| Variovorax sp. OAS795 | 0.36 | ABID97_RS07605 | | hemolysin III family protein | 0.27 | ABID97_RS05360 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 91 |
| Pseudomonas syringae pv. syringae B728a | 0.35 | Psyr_0452 | | HylII | 0.44 | Psyr_0017 | | 16S rRNA m(5)C-967 methyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.35 | Psyr_0452 | | HylII | 0.44 | Psyr_0017 | | 16S rRNA m(5)C-967 methyltransferase | low | > 86 |
| Pseudomonas sp. SVBP6 | 0.35 | COO64_RS13640 | | hemolysin III family protein | 0.43 | COO64_RS02215 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 93 |
| Pseudomonas sp. BP01 | 0.35 | JOY50_RS09760 | | hemolysin III family protein | 0.44 | JOY50_RS08250 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 84 |
| Pseudomonas lactucae CFBP13502 | 0.35 | GEMAOFIL_05445 | | hypothetical protein | 0.43 | GEMAOFIL_00223 | | Ribosomal RNA small subunit methyltransferase B | low | > 96 |
| Pseudomonas fluorescens FW300-N2E2 | 0.35 | Pf6N2E2_4629 | | COG1272: Predicted membrane protein hemolysin III homolog | 0.44 | Pf6N2E2_4121 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.35 | AO356_13560 | | hemolysin III | 0.44 | AO356_11275 | | 16S rRNA methyltransferase | low | > 104 |
| Pseudomonas sp. RS175 | 0.35 | PFR28_04213 | | hypothetical protein | 0.44 | PFR28_04663 | | Ribosomal RNA small subunit methyltransferase B | low | > 88 |
| Pseudomonas sp. S08-1 | 0.34 | OH686_06045 | | Predicted membrane protein, hemolysin III-related | 0.43 | OH686_12525 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase | low | > 80 |
| Sinorhizobium meliloti 1021 | 0.34 | SMc00455 | | hypothetical protein | 0.21 | SMc04090 | | sun protein | low | > 103 |
| Pseudomonas fluorescens SBW25-INTG | 0.34 | PFLU_RS28225 | | hemolysin III family protein | 0.43 | PFLU_RS00080 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.34 | PFLU_RS28225 | | hemolysin III family protein | 0.43 | PFLU_RS00080 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 109 |
| Pseudomonas sp. DMC3 | 0.34 | GFF181 | | hypothetical protein | 0.45 | GFF590 | | Ribosomal RNA small subunit methyltransferase B | low | > 89 |
| Pseudomonas orientalis W4I3 | 0.34 | QF045_RS00960 | | hemolysin III family protein | 0.43 | QF045_RS03020 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 93 |
| Pseudomonas simiae WCS417 | 0.34 | PS417_26570 | | hemolysin III | 0.43 | PS417_00085 | | 16S rRNA methyltransferase | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.34 | Pf1N1B4_2371 | | COG1272: Predicted membrane protein hemolysin III homolog | 0.44 | Pf1N1B4_1914 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | low | > 87 |
| Agrobacterium fabrum C58 | 0.34 | Atu0906 | | Hemolysin III | 0.21 | Atu2825 | | Sun protein | low | > 89 |
| Pseudomonas fluorescens GW456-L13 | 0.34 | PfGW456L13_1038 | | COG1272: Predicted membrane protein hemolysin III homolog | 0.44 | PfGW456L13_652 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.33 | AO353_08075 | | hemolysin III | 0.44 | AO353_10630 | | 16S rRNA methyltransferase | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.33 | DY961_RS09940 | | hemolysin III family protein | 0.44 | DY961_RS26285 | rsmB;go_function=RNA | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 100 |
| Pseudomonas aeruginosa PA14 | 0.33 | IKLFDK_29400 | | hemolysin III | 0.44 | IKLFDK_25475 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.33 | DQ20_RS52110 | | hemolysin III family protein | 0.44 | DQ20_RS58690 | rsmB;go_function=RNA | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 101 |
| Rhizobium sp. OAE497 | 0.32 | ABIE40_RS04960 | | hemolysin III family protein | 0.22 | ABIE40_RS19140 | | RsmB/NOP family class I SAM-dependent RNA methyltransferase | low | > 107 |
| Ralstonia sp. UNC404CL21Col | 0.32 | ABZR87_RS02015 | | hemolysin III family protein | 0.31 | ABZR87_RS04950 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 80 |
| Desulfovibrio vulgaris Miyazaki F | 0.32 | DvMF_2247 | | channel protein, hemolysin III family (RefSeq) | 0.13 | DvMF_2042 | | NusB/RsmB/TIM44 (RefSeq) | — | — |
| Pseudomonas stutzeri RCH2 | 0.32 | Psest_3779 | | channel protein, hemolysin III family | 0.48 | Psest_0021 | | ribosomal RNA small subunit methyltransferase RsmB | low | > 67 |
| Variovorax sp. SCN45 | 0.32 | GFF5671 | | FIG01964566: Predicted membrane protein, hemolysin III homolog | 0.27 | GFF5878 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) | low | > 127 |
| Azospirillum brasilense Sp245 | 0.31 | AZOBR_RS18955 | | DNA-binding protein | 0.24 | AZOBR_RS00235 | | MFS transporter | low | > 97 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.30 | DVU3295 | | hemolysin III (TIGR) | 0.16 | DVU3363 | sun | sun protein (TIGR) | 0.26 | 34 |
| Rhodospirillum rubrum S1H | 0.30 | Rru_A0661 | | Hly-III related proteins (NCBI) | 0.21 | Rru_A3660 | | tRNA and rRNA cytosine-C5-methylase (NCBI) | low | > 58 |
| Rhodopseudomonas palustris CGA009 | 0.30 | TX73_008140 | | hemolysin III family protein | 0.21 | TX73_000155 | | transcription antitermination factor NusB | low | > 86 |
| Azospirillum sp. SherDot2 | 0.29 | MPMX19_02364 | | hypothetical protein | 0.25 | MPMX19_02327 | | Ribosomal RNA small subunit methyltransferase B | low | > 112 |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_2910 | | Hly-III family protein (RefSeq) | 0.19 | Dshi_3033 | | Fmu (Sun) domain protein (RefSeq) | low | > 64 |
| Fusobacterium nucleatum SB010 | 0.24 | HUW76_01725 | | hemolysin III family protein | 0.21 | HUW76_07955 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 35 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.24 | A4249_RS14635 | | hemolysin III family protein | 0.19 | A4249_RS13165 | | RsmB/NOP family class I SAM-dependent RNA methyltransferase | low | > 48 |
Not shown: 11 genomes with orthologs for CSW01_00205 only; 21 genomes with orthologs for CSW01_00225 only