| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Klebsiella michiganensis M5al | 1.0 | BWI76_RS08740 | | Histidine ammonia-lyase (EC 4.3.1.3) (from data) | 1.0 | BWI76_RS00385 | | nitrogen assimilation regulatory protein | 0.16 | 15 |
| Enterobacter sp. TBS_079 | 0.87 | MPMX20_01400 | | Histidine ammonia-lyase | 0.94 | MPMX20_04597 | | DNA-binding transcriptional regulator NtrC | low | > 85 |
| Enterobacter asburiae PDN3 | 0.86 | EX28DRAFT_2219 | | histidine ammonia-lyase (EC 4.3.1.3) | 0.95 | EX28DRAFT_4350 | | nitrogen regulation protein NR(I) | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.83 | GFF668 | | Histidine ammonia-lyase (EC 4.3.1.3) | 0.94 | GFF2220 | | Nitrogen regulation protein NR(I) | low | > 78 |
| Pseudomonas simiae WCS417 | 0.80 | PS417_01750 | | histidine ammonia-lyase | 0.68 | PS417_01635 | | nitrogen regulation protein NR(I) | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.79 | PFLU_RS01805 | | histidine ammonia-lyase | 0.68 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.79 | PFLU_RS01805 | | histidine ammonia-lyase | 0.68 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.79 | PfGW456L13_320 | | Histidine ammonia-lyase (EC 4.3.1.3) (from data) | 0.67 | PfGW456L13_347 | | Nitrogen regulation protein NR(I) | low | > 87 |
| Pseudomonas putida KT2440 | 0.79 | PP_5032 | | Histidine ammonia-lyase | 0.67 | PP_5048 | | two-component system DNA-binding transcriptional dual regulator GlnL/GlnG | low | > 96 |
| Serratia liquefaciens MT49 | 0.79 | IAI46_03660 | | histidine ammonia-lyase | 0.93 | IAI46_24960 | | nitrogen regulation protein NR(I) | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.79 | Pf1N1B4_1581 | | Histidine ammonia-lyase (EC 4.3.1.3) | 0.67 | Pf1N1B4_1611 | | Nitrogen regulation protein NR(I) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.79 | Pf6N2E2_3799 | | Histidine ammonia-lyase (EC 4.3.1.3) (from data) | 0.68 | Pf6N2E2_3826 | | Nitrogen regulation protein NR(I) | low | > 103 |
| Pseudomonas sp. RS175 | 0.79 | PFR28_04971 | | Histidine ammonia-lyase | 0.67 | PFR28_04944 | | DNA-binding transcriptional regulator NtrC | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.78 | AO356_09600 | | histidine ammonia-lyase | 0.68 | AO356_09730 | | nitrogen regulation protein NR(I) | low | > 104 |
| Pseudomonas syringae pv. syringae B728a | 0.78 | Psyr_4833 | | histidine ammonia-lyase | 0.68 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.78 | Psyr_4833 | | histidine ammonia-lyase | 0.68 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.78 | AO353_12270 | | histidine ammonia-lyase | 0.68 | AO353_12145 | | nitrogen regulation protein NR(I) | low | > 101 |
| Pseudomonas sp. S08-1 | 0.78 | OH686_16755 | | histidine ammonia-lyase | 0.67 | OH686_10640 | | nitrogen regulation protein NR(I) | 0.48 | 62 |
| Cupriavidus basilensis FW507-4G11 | 0.78 | RR42_RS14640 | | histidine ammonia-lyase | 0.56 | RR42_RS12980 | | chemotaxis protein CheY | low | > 128 |
| Vibrio cholerae E7946 ATCC 55056 | 0.70 | CSW01_06080 | | histidine ammonia-lyase | 0.72 | CSW01_13865 | | nitrogen regulation protein NR(I) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.66 | SO0098 | hutH | histidine ammonia-lyase (NCBI ptt file) | 0.70 | SO4472 | ntrC | nitrogen regulation protein NR(I) (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.66 | Shewana3_0101 | | histidine ammonia-lyase (RefSeq) | 0.70 | Shewana3_0258 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.66 | Shew_3756 | | histidine ammonia-lyase (RefSeq) | 0.68 | Shew_3561 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.62 | MIT1002_00905 | | Histidine ammonia-lyase | 0.70 | MIT1002_03186 | | Nitrogen regulation protein NR(I) | low | > 70 |
| Paraburkholderia sabiae LMG 24235 | 0.59 | QEN71_RS23515 | | histidine ammonia-lyase | 0.55 | QEN71_RS05675 | | nitrogen regulation protein NR(I) | low | > 153 |
| Ralstonia solanacearum IBSBF1503 | 0.57 | RALBFv3_RS05390 | | histidine ammonia-lyase | 0.56 | RALBFv3_RS15540 | | nitrogen regulation protein NR(I) | — | — |
| Ralstonia solanacearum PSI07 | 0.57 | RPSI07_RS11915 | | histidine ammonia-lyase | 0.57 | RPSI07_RS17815 | | nitrogen regulation protein NR(I) | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.57 | RS_RS13250 | | histidine ammonia-lyase | 0.56 | RS_RS06320 | | nitrogen regulation protein NR(I) | — | — |
| Ralstonia solanacearum UW163 | 0.57 | UW163_RS08235 | | histidine ammonia-lyase | 0.56 | UW163_RS13000 | | nitrogen regulation protein NR(I) | — | — |
| Ralstonia sp. UNC404CL21Col | 0.57 | ABZR87_RS01025 | | histidine ammonia-lyase | 0.56 | ABZR87_RS11070 | | nitrogen regulation protein NR(I) | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.57 | H281DRAFT_04873 | | histidine ammonia-lyase | 0.54 | H281DRAFT_00454 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family | 0.29 | 93 |
| Burkholderia phytofirmans PsJN | 0.57 | BPHYT_RS07555 | | Histidine ammonia-lyase (EC 4.3.1.3) (from data) | 0.54 | BPHYT_RS12935 | | chemotaxis protein CheY | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.56 | ABIE53_001729 | | histidine ammonia-lyase | 0.54 | ABIE53_002804 | | two-component system nitrogen regulation response regulator GlnG | low | > 113 |
| Rahnella sp. WP5 | 0.55 | EX31_RS06755 | | histidine ammonia-lyase | 0.94 | EX31_RS15880 | | nitrogen regulation protein NR(I) | low | > 89 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.55 | GFF3589 | | Histidine ammonia-lyase (EC 4.3.1.3) | 0.54 | GFF5269 | | Nitrogen regulation protein NR(I) | — | — |
| Dickeya dadantii 3937 | 0.54 | DDA3937_RS14995 | | histidine ammonia-lyase | 0.92 | DDA3937_RS00125 | | nitrogen regulation protein NR(I) | low | > 74 |
| Variovorax sp. OAS795 | 0.54 | ABID97_RS03420 | | histidine ammonia-lyase | 0.55 | ABID97_RS09945 | | nitrogen regulation protein NR(I) | low | > 91 |
| Pantoea sp. MT58 | 0.54 | IAI47_13275 | | histidine ammonia-lyase | 0.95 | IAI47_00450 | | nitrogen regulation protein NR(I) | low | > 76 |
| Variovorax sp. SCN45 | 0.53 | GFF6409 | | Histidine ammonia-lyase (EC 4.3.1.3) | 0.55 | GFF3066 | | Nitrogen regulation protein NR(I), GlnG (=NtrC) | — | — |
| Dickeya dianthicola 67-19 | 0.53 | HGI48_RS15090 | | histidine ammonia-lyase | 0.92 | HGI48_RS21235 | | nitrogen regulation protein NR(I) | low | > 71 |
| Acidovorax sp. GW101-3H11 | 0.53 | Ac3H11_2558 | | Histidine ammonia-lyase (EC 4.3.1.3) (from data) | 0.55 | Ac3H11_4432 | | Nitrogen regulation protein NR(I) | low | > 79 |
| Rhodospirillum rubrum S1H | 0.53 | Rru_A1301 | | Histidine ammonia-lyase (NCBI) | 0.40 | Rru_A1678 | | Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) | low | > 58 |
| Castellaniella sp019104865 MT123 | 0.53 | ABCV34_RS12780 | | histidine ammonia-lyase | 0.50 | ABCV34_RS03540 | | nitrogen regulation protein NR(I) | low | > 48 |
| Dickeya dianthicola ME23 | 0.53 | DZA65_RS15835 | | histidine ammonia-lyase | 0.92 | DZA65_RS22210 | | nitrogen regulation protein NR(I) | low | > 75 |
| Azospirillum sp. SherDot2 | 0.52 | MPMX19_04940 | | Histidine ammonia-lyase | 0.40 | MPMX19_01112 | | DNA-binding transcriptional regulator NtrC | — | — |
| Sinorhizobium meliloti 1021 | 0.49 | SM_b21165 | | Histidine ammonia-lyase (EC 4.3.1.3) (from data) | 0.42 | SMc01043 | | nitrogen assimilation regulatory protein | low | > 103 |
| Rhizobium sp. OAE497 | 0.49 | ABIE40_RS20355 | | histidine ammonia-lyase | 0.42 | ABIE40_RS09090 | | nitrogen regulation protein NR(I) | low | > 107 |
| Agrobacterium fabrum C58 | 0.48 | Atu3933 | | histidine ammonia-lyase | 0.42 | Atu1446 | | two component response regulator | low | > 89 |
| Sphingomonas koreensis DSMZ 15582 | 0.48 | Ga0059261_3963 | | Histidine ammonia-lyase (EC 4.3.1.3) (from data) | 0.38 | Ga0059261_0137 | | nitrogen regulation protein NR(I) | low | > 68 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.48 | Xcc-8004.3296.1 | | Histidine ammonia-lyase (EC 4.3.1.3) | 0.48 | Xcc-8004.252.1 | | Nitrogen regulation protein NtrC | low | > 74 |
| Bosea sp. OAE506 | 0.46 | ABIE41_RS23645 | | histidine ammonia-lyase | 0.41 | ABIE41_RS16785 | | nitrogen regulation protein NR(I) | low | > 77 |
| Phaeobacter inhibens DSM 17395 | 0.45 | PGA1_c36340 | | Histidine ammonia-lyase (EC 4.3.1.3) (from data) | 0.30 | PGA1_c14810 | | nitrogen assimilation regulatory protein NtrX | — | — |
| Shewanella amazonensis SB2B | 0.38 | Sama_1631 | | Histidine ammonia-lyase (EC 4.3.1.3) (from data) | 0.69 | Sama_3427 | | response regulator receiver protein (RefSeq) | low | > 62 |
| Phocaeicola vulgatus CL09T03C04 | 0.34 | HMPREF1058_RS02545 | | histidine ammonia-lyase | 0.34 | HMPREF1058_RS04160 | | sigma-54-dependent Fis family transcriptional regulator | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.34 | ABI39_RS01830 | | histidine ammonia-lyase | 0.34 | ABI39_RS17060 | | sigma-54-dependent Fis family transcriptional regulator | low | > 72 |
| Bacteroides ovatus ATCC 8483 | 0.33 | BACOVA_00991 | | histidine ammonia-lyase | 0.32 | BACOVA_04264 | | Sigma-54 interaction domain protein | low | > 94 |
| Herbaspirillum seropedicae SmR1 | 0.28 | HSERO_RS22680 | | histidine ammonia-lyase | 0.57 | HSERO_RS15680 | | chemotaxis protein CheY | low | > 78 |
| Lysobacter sp. OAE881 | 0.28 | ABIE51_RS13345 | | aromatic amino acid lyase | 0.49 | ABIE51_RS01360 | | nitrogen regulation protein NR(I) | low | > 62 |
| Rhodanobacter denitrificans FW104-10B01 | 0.28 | LRK54_RS01300 | | aromatic amino acid ammonia-lyase | 0.47 | LRK54_RS07980 | | nitrogen regulation protein NR(I) | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.28 | OKGIIK_05610 | hutH | histidine ammonia-lyase | 0.45 | OKGIIK_14465 | ntrC | nitrogen regulation protein NR(I) | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.28 | ABZR86_RS06750 | | histidine ammonia-lyase | 0.45 | ABZR86_RS15515 | | nitrogen regulation protein NR(I) | low | > 74 |
| Pseudomonas stutzeri RCH2 | 0.20 | Psest_3695 | | Histidine ammonia-lyase | 0.66 | Psest_3932 | | nitrogen regulation protein NR(I) | low | > 67 |
| Escherichia coli ECOR38 | 0.18 | HEPCGN_01360 | | histidine ammonia-lyase | 0.94 | HEPCGN_12740 | glnG | nitrogen regulation protein NR(I) | low | > 87 |
Not shown: 12 genomes with orthologs for BWI76_RS08740 only; 22 genomes with orthologs for BWI76_RS00385 only