Conservation of cofitness between BPHYT_RS01650 and BPHYT_RS03725 in Burkholderia phytofirmans PsJN

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS01650 23S rRNA methyltransferase 1.0 BPHYT_RS03725 serine hydroxymethyltransferase 0.34 10
Paraburkholderia bryophila 376MFSha3.1 0.94 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase 0.99 H281DRAFT_04726 serine hydroxymethyltransferase — —
Paraburkholderia graminis OAS925 0.94 ABIE53_000425 23S rRNA (cytosine1962-C5)-methyltransferase 0.99 ABIE53_000888 glycine hydroxymethyltransferase — —
Paraburkholderia sabiae LMG 24235 0.92 QEN71_RS00350 class I SAM-dependent rRNA methyltransferase 0.94 QEN71_RS26235 serine hydroxymethyltransferase low > 153
Ralstonia sp. UNC404CL21Col 0.76 ABZR87_RS05070 class I SAM-dependent rRNA methyltransferase 0.86 ABZR87_RS08955 serine hydroxymethyltransferase — —
Ralstonia solanacearum PSI07 0.76 RPSI07_RS23695 class I SAM-dependent rRNA methyltransferase 0.85 RPSI07_RS20330 serine hydroxymethyltransferase low > 81
Ralstonia solanacearum IBSBF1503 0.76 RALBFv3_RS09670 class I SAM-dependent rRNA methyltransferase 0.85 RALBFv3_RS12895 serine hydroxymethyltransferase — —
Ralstonia solanacearum UW163 0.76 UW163_RS03910 class I SAM-dependent rRNA methyltransferase 0.85 UW163_RS00670 serine hydroxymethyltransferase — —
Ralstonia solanacearum GMI1000 0.75 RS_RS00255 class I SAM-dependent rRNA methyltransferase 0.85 RS_RS03670 serine hydroxymethyltransferase — —
Cupriavidus basilensis FW507-4G11 0.71 RR42_RS01670 23S rRNA methyltransferase 0.86 RR42_RS15485 serine hydroxymethyltransferase — —
Dechlorosoma suillum PS 0.56 Dsui_0653 putative SAM-dependent methyltransferase 0.79 Dsui_1265 glycine/serine hydroxymethyltransferase — —
Shewanella amazonensis SB2B 0.49 Sama_2965 putative SAM-dependent methyltransferase (RefSeq) 0.68 Sama_1014 glyA serine hydroxymethyltransferase (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_06820 ribosomal RNA large subunit methyltransferase I 0.64 CSW01_04820 serine hydroxymethyltransferase low > 62
Shewanella oneidensis MR-1 0.49 SO1149 hypothetical SAM-dependent methyltransferase (NCBI ptt file) 0.68 SO3471 glyA serine hydroxymethyltransferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.48 Shewana3_0977 SAM-dependent methyltransferase (RefSeq) 0.68 Shewana3_1094 glyA serine hydroxymethyltransferase (RefSeq) low > 73
Variovorax sp. SCN45 0.47 GFF4489 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) 0.79 GFF560 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Alteromonas macleodii MIT1002 0.47 MIT1002_01688 Ribosomal RNA large subunit methyltransferase I 0.62 MIT1002_02702 Serine hydroxymethyltransferase low > 70
Klebsiella michiganensis M5al 0.47 BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.65 BWI76_RS21225 serine hydroxymethyltransferase — —
Escherichia coli ECRC99 0.46 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.65 KEDOAH_06710 glyA serine hydroxymethyltransferase — —
Escherichia coli ECRC101 0.46 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.65 MCAODC_12040 glyA serine hydroxymethyltransferase low > 87
Escherichia coli ECRC62 0.46 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.65 BNILDI_11985 glyA serine hydroxymethyltransferase low > 75
Escherichia coli ECRC102 0.46 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.65 NIAGMN_19280 glyA serine hydroxymethyltransferase — —
Escherichia coli ECRC100 0.46 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.65 OKFHMN_21510 glyA serine hydroxymethyltransferase low > 80
Escherichia coli ECRC98 0.46 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.65 JDDGAC_25175 glyA serine hydroxymethyltransferase — —
Escherichia coli BL21 0.46 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent 0.65 ECD_02443 serine hydroxymethyltransferase low > 61
Enterobacter sp. TBS_079 0.46 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I 0.65 MPMX20_03420 Serine hydroxymethyltransferase — —
Escherichia coli BW25113 0.46 b0967 yccW predicted methyltransferase (RefSeq) 0.65 b2551 glyA serine hydroxymethyltransferase (NCBI) — —
Enterobacter asburiae PDN3 0.46 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases 0.65 EX28DRAFT_0099 Glycine/serine hydroxymethyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I 0.65 OHPLBJKB_01156 Serine hydroxymethyltransferase low > 73
Escherichia coli ECOR27 0.46 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.65 NOLOHH_13185 glyA serine hydroxymethyltransferase low > 75
Escherichia coli Nissle 1917 0.46 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.65 ECOLIN_RS14440 serine hydroxymethyltransferase — —
Escherichia coli ECOR38 0.46 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.65 HEPCGN_20655 glyA serine hydroxymethyltransferase low > 87
Escherichia fergusonii Becca 0.46 EFB2_03104 Ribosomal RNA large subunit methyltransferase I 0.65 EFB2_01345 Serine hydroxymethyltransferase — —
Erwinia tracheiphila SCR3 0.46 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.67 LU632_RS17915 serine hydroxymethyltransferase — —
Pantoea sp. MT58 0.46 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.67 IAI47_04960 serine hydroxymethyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF3258 LSU m5C1962 methyltransferase RlmI 0.66 GFF2447 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Variovorax sp. OAS795 0.45 ABID97_RS06155 class I SAM-dependent methyltransferase 0.79 ABID97_RS17890 serine hydroxymethyltransferase — —
Acidovorax sp. GW101-3H11 0.45 Ac3H11_2000 LSU m5C1962 methyltransferase RlmI 0.78 Ac3H11_2921 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pedobacter sp. GW460-11-11-14-LB5 0.44 CA265_RS19815 RlmI/RlmK family 23S rRNA methyltransferase 0.52 CA265_RS19165 serine hydroxymethyltransferase low > 88
Rahnella sp. WP5 0.44 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.68 EX31_RS20585 serine hydroxymethyltransferase — —
Serratia liquefaciens MT49 0.44 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.67 IAI46_19395 serine hydroxymethyltransferase — —
Bacteroides ovatus ATCC 8483 0.35 BACOVA_05134 hypothetical protein 0.54 BACOVA_02446 glycine hydroxymethyltransferase low > 94
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS18215 class I SAM-dependent rRNA methyltransferase 0.54 ABI39_RS17420 serine hydroxymethyltransferase low > 72
Parabacteroides merdae CL09T00C40 0.34 HMPREF1078_RS13685 class I SAM-dependent rRNA methyltransferase 0.51 HMPREF1078_RS02145 serine hydroxymethyltransferase low > 61
Pontibacter actiniarum KMM 6156, DSM 19842 0.33 CA264_05605 RlmI/RlmK family 23S rRNA methyltransferase 0.49 CA264_17045 serine hydroxymethyltransferase low > 74
Bacteroides thetaiotaomicron VPI-5482 0.33 BT4331 conserved hypothetical protein (NCBI ptt file) 0.53 BT0738 serine hydroxymethyltransferase (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS05925 class I SAM-dependent rRNA methyltransferase 0.53 HMPREF1181_RS15010 serine hydroxymethyltransferase low > 56
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS05890 class I SAM-dependent rRNA methyltransferase 0.54 HMPREF1058_RS03800 serine hydroxymethyltransferase low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_3350 Predicted SAM-dependent methyltransferases 0.50 Echvi_1188 Glycine/serine hydroxymethyltransferase low > 79
Xanthomonas campestris pv. campestris strain 8004 0.27 Xcc-8004.5393.1 LSU m5C1962 methyltransferase RlmI 0.67 Xcc-8004.4398.1 Serine hydroxymethyltransferase (EC 2.1.2.1) low > 74
Pseudomonas sp. RS175 0.26 PFR28_04274 Ribosomal RNA large subunit methyltransferase I 0.65 PFR28_03786 Serine hydroxymethyltransferase — —
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_977 LSU m5C1962 methyltransferase RlmI 0.65 PfGW456L13_1451 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS16890 class I SAM-dependent rRNA methyltransferase 0.67 ABZR86_RS10715 serine hydroxymethyltransferase low > 74
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_4566 LSU m5C1962 methyltransferase RlmI 0.65 Pf6N2E2_5082 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_13260 SAM-dependent methyltransferase 0.65 AO356_16850 serine hydroxymethyltransferase low > 104
Pseudomonas putida KT2440 0.26 PP_5127 ribosomal RNA large subunit methyltransferase I 0.65 PP_0671 serine hydroxymethyltransferase — —
Lysobacter sp. OAE881 0.26 ABIE51_RS00980 class I SAM-dependent rRNA methyltransferase 0.67 ABIE51_RS04620 serine hydroxymethyltransferase low > 62
Pseudomonas simiae WCS417 0.26 PS417_26880 SAM-dependent methyltransferase 0.65 PS417_24280 serine hydroxymethyltransferase — —
Pseudomonas stutzeri RCH2 0.25 Psest_0236 Predicted SAM-dependent methyltransferases 0.67 Psest_3404 Glycine/serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_08330 SAM-dependent methyltransferase 0.65 AO353_14020 serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_2307 LSU m5C1962 methyltransferase RlmI 0.65 Pf1N1B4_2778 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas sp. S08-1 0.25 OH686_14110 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.65 OH686_16230 Serine hydroxymethyltransferase — —
Pseudomonas fluorescens SBW25 0.25 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.65 PFLU_RS26195 serine hydroxymethyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_4764 SAM-dependent methyltransferase 0.64 Psyr_4270 serine hydroxymethyltransferase low > 86
Rhodanobacter denitrificans MT42 0.25 LRK55_RS06665 class I SAM-dependent rRNA methyltransferase 0.67 LRK55_RS04400 serine hydroxymethyltransferase 0.53 38
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.65 PFLU_RS26195 serine hydroxymethyltransferase — —
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS06920 class I SAM-dependent rRNA methyltransferase 0.67 LRK54_RS04625 serine hydroxymethyltransferase low > 59
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_4764 SAM-dependent methyltransferase 0.64 Psyr_4270 serine hydroxymethyltransferase low > 86
Marinobacter adhaerens HP15 0.24 HP15_460 SAM-dependent methyltransferase 0.66 HP15_489 glycine hydroxymethyltransferase — —
Rhodanobacter sp. FW510-T8 0.23 OKGIIK_16710 rlmK RlmI/RlmK family 23S rRNA methyltransferase 0.65 OKGIIK_11440 glyA serine hydroxymethyltransferase low > 52

Not shown: 12 genomes with orthologs for BPHYT_RS01650 only; 12 genomes with orthologs for BPHYT_RS03725 only