| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Burkholderia phytofirmans PsJN | 1.0 | BPHYT_RS12840 | | pyruvate dehydrogenase | 1.0 | BPHYT_RS02905 | | RNA polymerase subunit sigma-54 | 0.65 | 20 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.97 | H281DRAFT_00466 | | pyruvate dehydrogenase E1 component | 0.95 | H281DRAFT_01927 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Paraburkholderia graminis OAS925 | 0.97 | ABIE53_002793 | | pyruvate dehydrogenase E1 component | 0.94 | ABIE53_000718 | | RNA polymerase sigma-54 factor | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.92 | QEN71_RS05725 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.89 | QEN71_RS01755 | | RNA polymerase factor sigma-54 | — | — |
| Ralstonia sp. UNC404CL21Col | 0.82 | ABZR87_RS13470 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.67 | ABZR87_RS07060 | | RNA polymerase factor sigma-54 | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.82 | RR42_RS07365 | | pyruvate dehydrogenase | 0.64 | RR42_RS02085 | | RNA polymerase subunit sigma-54 | low | > 128 |
| Ralstonia solanacearum UW163 | 0.81 | UW163_RS14980 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.66 | UW163_RS02410 | | RNA polymerase sigma-54 factor | — | — |
| Ralstonia solanacearum PSI07 | 0.81 | RPSI07_RS15815 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.65 | RPSI07_RS22130 | | RNA polymerase factor sigma-54 | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.81 | RALBFv3_RS01670 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.66 | RALBFv3_RS11170 | | RNA polymerase sigma-54 factor | — | — |
| Ralstonia solanacearum GMI1000 | 0.81 | RS_RS08055 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.66 | RS_RS02020 | | RNA polymerase sigma-54 factor | — | — |
| Dechlorosoma suillum PS | 0.74 | Dsui_1578 | | pyruvate dehydrogenase E1 component, homodimeric type | 0.52 | Dsui_0704 | | RNA polymerase sigma-54 factor | 0.60 | 27 |
| Kangiella aquimarina DSM 16071 | 0.66 | B158DRAFT_2144 | | pyruvate dehydrogenase E1 component, homodimeric type | 0.30 | B158DRAFT_2080 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | low | > 40 |
| Herbaspirillum seropedicae SmR1 | 0.66 | HSERO_RS07305 | | pyruvate dehydrogenase | 0.58 | HSERO_RS19855 | | RNA polymerase subunit sigma-54 | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.65 | Pf6N2E2_3674 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.38 | Pf6N2E2_3267 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.64 | PfGW456L13_214 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.39 | PfGW456L13_5014 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.64 | AO356_08960 | | pyruvate dehydrogenase | 0.39 | AO356_07035 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.64 | Pf1N1B4_1476 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.39 | Pf1N1B4_1080 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas sp. RS175 | 0.64 | PFR28_05061 | | Pyruvate dehydrogenase E1 component | 0.39 | PFR28_00173 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas putida KT2440 | 0.64 | PP_0339 | | Pyruvate dehydrogenase E1 component | 0.40 | PP_0952 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens SBW25 | 0.64 | PFLU_RS02275 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.40 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.64 | PFLU_RS02275 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.40 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas sp. S08-1 | 0.64 | OH686_09710 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.39 | OH686_08540 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.64 | AO353_12865 | | pyruvate dehydrogenase | 0.40 | AO353_05180 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas simiae WCS417 | 0.64 | PS417_02220 | | pyruvate dehydrogenase | 0.40 | PS417_04345 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.63 | Psyr_0518 | | 2-oxo-acid dehydrogenase E1 component homodimeric type | 0.40 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.63 | Psyr_0518 | | 2-oxo-acid dehydrogenase E1 component homodimeric type | 0.40 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Alteromonas macleodii MIT1002 | 0.63 | MIT1002_03003 | | Pyruvate dehydrogenase E1 component | 0.40 | MIT1002_00827 | | RNA polymerase sigma-54 factor 2 | low | > 70 |
| Dyella japonica UNC79MFTsu3.2 | 0.63 | ABZR86_RS12410 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.36 | ABZR86_RS19815 | | RNA polymerase factor sigma-54 | low | > 74 |
| Castellaniella sp019104865 MT123 | 0.62 | ABCV34_RS04160 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.29 | ABCV34_RS12430 | | RNA polymerase factor sigma-54 | — | — |
| Acidovorax sp. GW101-3H11 | 0.62 | Ac3H11_4093 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.43 | Ac3H11_727 | | RNA polymerase sigma-54 factor RpoN | low | > 79 |
| Marinobacter adhaerens HP15 | 0.62 | HP15_3046 | | pyruvate dehydrogenase subunit E1 | 0.40 | HP15_2442 | | RNA polymerase, sigma 54 subunit, RpoN | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.62 | GFF4890 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.43 | GFF3068 | | RNA polymerase sigma-54 factor RpoN | low | > 90 |
| Pseudomonas stutzeri RCH2 | 0.62 | Psest_0448 | | pyruvate dehydrogenase E1 component, homodimeric type | 0.40 | Psest_3313 | | RNA polymerase sigma-54 factor | — | — |
| Variovorax sp. SCN45 | 0.62 | GFF967 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.42 | GFF6290 | | RNA polymerase sigma-54 factor RpoN | low | > 127 |
| Lysobacter sp. OAE881 | 0.61 | ABIE51_RS18795 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.35 | ABIE51_RS15955 | | RNA polymerase factor sigma-54 | — | — |
| Shewanella loihica PV-4 | 0.61 | Shew_3431 | aceE | pyruvate dehydrogenase subunit E1 (RefSeq) | 0.36 | Shew_3311 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.60 | Shewana3_0426 | aceE | pyruvate dehydrogenase subunit E1 (RefSeq) | 0.36 | Shewana3_0672 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 73 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.60 | Xcc-8004.754.1 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.34 | Xcc-8004.1662.1 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Shewanella oneidensis MR-1 | 0.60 | SO0424 | aceE | pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase (NCBI ptt file) | 0.36 | SO3961 | rpoN | RNA polymerase sigma-54 factor (NCBI ptt file) | low | > 76 |
| Rhodanobacter sp. FW510-T8 | 0.59 | OKGIIK_12700 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.36 | OKGIIK_02265 | | RNA polymerase factor sigma-54 | low | > 52 |
| Escherichia coli ECRC101 | 0.58 | MCAODC_01015 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.40 | MCAODC_08460 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECOR27 | 0.58 | NOLOHH_02845 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.40 | NOLOHH_09740 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC62 | 0.58 | BNILDI_08765 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.40 | BNILDI_01795 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli BW25113 | 0.58 | b0114 | aceE | pyruvate dehydrogenase subunit E1 (NCBI) | 0.40 | b3202 | rpoN | DNA-directed RNA polymerase subunit N (NCBI) | — | — |
| Escherichia coli ECRC100 | 0.58 | OKFHMN_10500 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.40 | OKFHMN_17940 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli Nissle 1917 | 0.58 | ECOLIN_RS00640 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.40 | ECOLIN_RS18425 | | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.58 | OHPLBJKB_03547 | | Pyruvate dehydrogenase E1 component | 0.40 | OHPLBJKB_00498 | | RNA polymerase sigma-54 factor | — | — |
| Escherichia coli ECRC98 | 0.58 | JDDGAC_14095 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.40 | JDDGAC_21565 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC99 | 0.58 | KEDOAH_17655 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.40 | KEDOAH_10210 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli BL21 | 0.58 | ECD_00113 | | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate-binding | 0.40 | ECD_03067 | | RNA polymerase, sigma 54 (sigma N) factor | — | — |
| Escherichia coli ECRC102 | 0.58 | NIAGMN_08350 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.40 | NIAGMN_15700 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia fergusonii Becca | 0.58 | EFB2_03931 | | Pyruvate dehydrogenase E1 component | 0.40 | EFB2_00621 | | RNA polymerase sigma-54 factor | — | — |
| Escherichia coli ECOR38 | 0.58 | HEPCGN_08480 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.40 | HEPCGN_16815 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Pectobacterium carotovorum WPP14 | 0.58 | HER17_RS03290 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.39 | HER17_RS20060 | | RNA polymerase factor sigma-54 | — | — |
| Klebsiella michiganensis M5al | 0.58 | BWI76_RS04880 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.39 | BWI76_RS25265 | | RNA polymerase factor sigma-54 | — | — |
| Dickeya dadantii 3937 | 0.58 | DDA3937_RS17925 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.39 | DDA3937_RS01530 | | RNA polymerase factor sigma-54 | — | — |
| Dickeya dianthicola ME23 | 0.58 | DZA65_RS19000 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.39 | DZA65_RS01510 | | RNA polymerase factor sigma-54 | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.58 | LRK54_RS11175 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.35 | LRK54_RS12875 | | RNA polymerase factor sigma-54 | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.58 | LRK55_RS10880 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.35 | LRK55_RS12575 | | RNA polymerase factor sigma-54 | low | > 63 |
| Dickeya dianthicola 67-19 | 0.58 | HGI48_RS17850 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.39 | HGI48_RS01445 | | RNA polymerase factor sigma-54 | — | — |
| Acinetobacter radioresistens SK82 | 0.58 | MPMX26_02925 | | Pyruvate dehydrogenase E1 component | 0.32 | MPMX26_02592 | | RNA polymerase sigma-54 factor | low | > 36 |
| Pantoea sp. MT58 | 0.58 | IAI47_15810 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.40 | IAI47_17185 | | RNA polymerase factor sigma-54 | 0.60 | 70 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.58 | GFF122 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.40 | GFF2946 | | RNA polymerase sigma-54 factor RpoN | 0.94 | 2 |
| Enterobacter sp. TBS_079 | 0.58 | MPMX20_00807 | | Pyruvate dehydrogenase E1 component | 0.38 | MPMX20_04108 | | RNA polymerase sigma-54 factor | — | — |
| Enterobacter asburiae PDN3 | 0.57 | EX28DRAFT_3710 | | pyruvate dehydrogenase E1 component, homodimeric type | 0.40 | EX28DRAFT_3256 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Shewanella amazonensis SB2B | 0.57 | Sama_0375 | aceE | pyruvate dehydrogenase subunit E1 (RefSeq) | 0.35 | Sama_3088 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.57 | CSW01_12220 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.38 | CSW01_12815 | | RNA polymerase sigma-54 factor | — | — |
| Erwinia tracheiphila SCR3 | 0.57 | LU632_RS03080 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.39 | LU632_RS21280 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Rahnella sp. WP5 | 0.57 | EX31_RS03480 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.40 | EX31_RS12400 | | RNA polymerase factor sigma-54 | 0.85 | 2 |
| Serratia liquefaciens MT49 | 0.57 | IAI46_21325 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.39 | IAI46_22470 | | RNA polymerase factor sigma-54 | — | — |
| Bosea sp. OAE506 | 0.09 | ABIE41_RS08425 | | transketolase | 0.29 | ABIE41_RS00125 | | RNA polymerase factor sigma-54 | low | > 77 |
| Azospirillum sp. SherDot2 | 0.09 | MPMX19_03172 | | Pyruvate dehydrogenase E1 component | 0.28 | MPMX19_02668 | | RNA polymerase sigma-54 factor 2 | low | > 112 |
| Caulobacter crescentus NA1000 | 0.07 | CCNA_01263 | | pyruvate dehydrogenase E1 component | 0.27 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.07 | CCNA_01263 | | pyruvate dehydrogenase E1 component | 0.27 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | low | > 67 |
Not shown: 3 genomes with orthologs for BPHYT_RS12840 only; 20 genomes with orthologs for BPHYT_RS02905 only