Conservation of cofitness between BPHYT_RS02150 and BPHYT_RS02625 in Burkholderia phytofirmans PsJN

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS02150 biotin synthase 1.0 BPHYT_RS02625 competence protein ComF 0.26 9
Paraburkholderia bryophila 376MFSha3.1 0.91 H281DRAFT_02097 biotin synthase 0.70 H281DRAFT_01997 comF family protein low > 103
Paraburkholderia graminis OAS925 0.90 ABIE53_000577 biotin synthase 0.69 ABIE53_000670 ComF family protein low > 113
Paraburkholderia sabiae LMG 24235 0.85 QEN71_RS01085 biotin synthase BioB 0.63 QEN71_RS01480 ComF family protein — —
Ralstonia solanacearum PSI07 0.71 RPSI07_RS22850 biotin synthase BioB 0.32 RPSI07_RS22380 amidophosphoribosyltransferase low > 81
Ralstonia solanacearum GMI1000 0.70 RS_RS01305 biotin synthase 0.28 RS_RS01770 amidophosphoribosyltransferase low > 80
Ralstonia solanacearum UW163 0.70 UW163_RS03115 biotin synthase BioB 0.30 UW163_RS02650 amidophosphoribosyltransferase — —
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS10465 biotin synthase BioB 0.30 RALBFv3_RS10930 amidophosphoribosyltransferase — —
Ralstonia sp. UNC404CL21Col 0.69 ABZR87_RS06265 biotin synthase BioB 0.28 ABZR87_RS06780 ComF family protein low > 80
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS00940 biotin synthase 0.36 RR42_RS01860 amidophosphoribosyltransferase low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF3992 Biotin synthase (EC 2.8.1.6) 0.16 GFF685 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy low > 90
Dyella japonica UNC79MFTsu3.2 0.59 ABZR86_RS15840 biotin synthase BioB 0.22 ABZR86_RS15860 ComF family protein low > 74
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_0864 biotin synthase (EC 2.8.1.6) 0.20 B158DRAFT_0863 Predicted amidophosphoribosyltransferases — —
Acidovorax sp. GW101-3H11 0.57 Ac3H11_2272 Biotin synthase (EC 2.8.1.6) 0.17 Ac3H11_3895 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy low > 79
Castellaniella sp019104865 MT123 0.57 ABCV34_RS15280 biotin synthase BioB 0.14 ABCV34_RS14240 phosphoribosyltransferase family protein low > 48
Marinobacter adhaerens HP15 0.57 HP15_2486 biotin synthase 0.20 HP15_2487 competence protein ComF low > 73
Pseudomonas putida KT2440 0.57 PP_0362 Biotin synthase 0.26 PP_0361 putative Competence protein ComF low > 96
Herbaspirillum seropedicae SmR1 0.57 HSERO_RS12235 biotin synthase 0.30 HSERO_RS20810 amidophosphoribosyltransferase low > 78
Pseudomonas stutzeri RCH2 0.57 Psest_0411 biotin synthetase 0.27 Psest_0410 Predicted amidophosphoribosyltransferases low > 67
Pseudomonas sp. S08-1 0.57 OH686_10355 biotin synthase 0.23 OH686_10360 Competence protein F-related, phosphoribosyltransferase domain / protein YhgH required for utilization of DNA as sole source of carbon and energy low > 80
Escherichia coli ECRC102 0.57 NIAGMN_04445 bioB biotin synthase BioB 0.20 NIAGMN_14765 gntX DNA utilization protein GntX — —
Escherichia coli ECRC98 0.57 JDDGAC_10035 bioB biotin synthase BioB 0.20 JDDGAC_20625 gntX DNA utilization protein GntX low > 86
Escherichia coli ECRC99 0.57 KEDOAH_21510 bioB biotin synthase BioB 0.20 KEDOAH_11145 gntX DNA utilization protein GntX — —
Escherichia coli ECRC101 0.57 MCAODC_25615 bioB biotin synthase BioB 0.20 MCAODC_07525 gntX DNA utilization protein GntX low > 87
Escherichia coli ECRC100 0.57 OKFHMN_06400 bioB biotin synthase BioB 0.20 OKFHMN_16995 gntX DNA utilization protein GntX low > 80
Escherichia coli ECOR38 0.56 HEPCGN_01640 bioB biotin synthase BioB 0.20 HEPCGN_15805 gntX DNA utilization protein GntX low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_4687 biotin synthase 0.23 Psyr_4688 Phosphoribosyltransferase low > 86
Escherichia coli ECOR27 0.56 NOLOHH_22770 bioB biotin synthase BioB 0.20 NOLOHH_08780 gntX DNA utilization protein GntX low > 75
Escherichia coli ECRC62 0.56 BNILDI_21040 bioB biotin synthase BioB 0.20 BNILDI_02735 gntX DNA utilization protein GntX low > 75
Klebsiella michiganensis M5al 0.56 BWI76_RS08760 biotin synthase 0.18 BWI76_RS26625 gluconate transporter periplasmic gluconate-binding protein low > 92
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS27650 biotin synthase BioB 0.23 PFLU_RS27655 ComF family protein low > 109
Enterobacter sp. TBS_079 0.56 MPMX20_01403 Biotin synthase 0.20 MPMX20_04300 Putative ribose-phosphate pyrophosphokinase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_02938 Biotin synthase 0.20 OHPLBJKB_00290 hypothetical protein low > 73
Escherichia coli BW25113 0.56 b0775 bioB biotin synthase (NCBI) 0.20 b3413 yhgH orf, hypothetical protein (VIMSS) low > 76
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_4687 biotin synthase 0.23 Psyr_4688 Phosphoribosyltransferase low > 86
Pseudomonas fluorescens SBW25 0.56 PFLU_RS27650 biotin synthase BioB 0.23 PFLU_RS27655 ComF family protein low > 109
Escherichia coli BL21 0.56 ECD_00742 biotin synthase 0.20 ECD_03265 DNA catabolic protein low > 61
Pantoea sp. MT58 0.56 IAI47_13530 biotin synthase BioB 0.17 IAI47_01785 DNA utilization protein GntX low > 76
Lysobacter sp. OAE881 0.56 ABIE51_RS01140 biotin synthase BioB 0.23 ABIE51_RS01135 ComF family protein low > 62
Escherichia fergusonii Becca 0.56 EFB2_03330 Biotin synthase 0.19 EFB2_00415 Putative ribose-phosphate pyrophosphokinase low > 86
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) 0.20 Pf6N2E2_4758 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy low > 103
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF671 Biotin synthase (EC 2.8.1.6) 0.21 GFF604 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy low > 78
Escherichia coli Nissle 1917 0.56 ECOLIN_RS04130 biotin synthase BioB 0.20 ECOLIN_RS19495 DNA utilization protein GntX low > 55
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.505.1 Biotin synthase (EC 2.8.1.6) 0.24 Xcc-8004.506.1 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy low > 74
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_14135 biotin synthase 0.21 AO356_14130 amidophosphoribosyltransferase low > 104
Shewanella amazonensis SB2B 0.56 Sama_1438 biotin synthase (RefSeq) 0.15 Sama_3504 competence protein ComF (RefSeq) — —
Variovorax sp. SCN45 0.56 GFF937 Biotin synthase (EC 2.8.1.6) 0.22 GFF2294 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy low > 127
Enterobacter asburiae PDN3 0.56 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) 0.20 EX28DRAFT_4129 Predicted amidophosphoribosyltransferases low > 76
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_07525 biotin synthase 0.27 AO353_07530 amidophosphoribosyltransferase low > 101
Pseudomonas sp. RS175 0.56 PFR28_04103 Biotin synthase 0.23 PFR28_04104 hypothetical protein low > 88
Dechlorosoma suillum PS 0.56 Dsui_1297 biotin synthetase 0.20 Dsui_1296 putative amidophosphoribosyltransferase low > 51
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_13650 bioB biotin synthase BioB 0.21 OKGIIK_13640 Competence protein ComF low > 52
Variovorax sp. OAS795 0.55 ABID97_RS13955 biotin synthase BioB 0.22 ABID97_RS23980 ComF family protein low > 91
Rahnella sp. WP5 0.55 EX31_RS23695 biotin synthase BioB 0.20 EX31_RS04920 DNA utilization protein GntX low > 89
Rhodanobacter denitrificans MT42 0.55 LRK55_RS09900 biotin synthase BioB 0.22 LRK55_RS09910 ComF family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS10260 biotin synthase BioB 0.22 LRK54_RS10270 ComF family protein low > 59
Shewanella oneidensis MR-1 0.55 SO2740 bioB biotin synthase (NCBI ptt file) 0.15 SO4625 comF competence protein ComF (NCBI ptt file) — —
Pectobacterium carotovorum WPP14 0.55 HER17_RS13460 biotin synthase BioB 0.18 HER17_RS01550 DNA utilization protein GntX low > 75
Shewanella loihica PV-4 0.55 Shew_1719 biotin synthase (RefSeq) 0.16 Shew_3629 competence protein ComF (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.55 AMB_RS13865 biotin synthase 0.14 AMB_RS08105 amidophosphoribosyltransferase — —
Shewanella sp. ANA-3 0.54 Shewana3_2519 biotin synthase (RefSeq) 0.16 Shewana3_4009 competence protein ComF (RefSeq) low > 73
Sphingomonas koreensis DSMZ 15582 0.54 Ga0059261_3989 biotin synthase (EC 2.8.1.6) 0.14 Ga0059261_3601 Predicted amidophosphoribosyltransferases low > 68
Agrobacterium fabrum C58 0.52 Atu3997 biotin synthetase 0.16 Atu3512 competence protein F low > 89
Phaeobacter inhibens DSM 17395 0.51 PGA1_c09120 biotin synthase BioB 0.12 PGA1_c34720 phosphoribosyl transferase-like protein low > 62
Rhodopseudomonas palustris CGA009 0.51 TX73_010535 biotin synthase BioB 0.16 TX73_003090 ComF family protein low > 86
Rhizobium sp. OAE497 0.49 ABIE40_RS21075 biotin synthase BioB 0.16 ABIE40_RS17355 ComF family protein low > 107
Mucilaginibacter yixingensis YX-36 DSM 26809 0.42 ABZR88_RS10190 biotin synthase BioB 0.12 ABZR88_RS00650 ComF family protein low > 71

Not shown: 24 genomes with orthologs for BPHYT_RS02150 only; 7 genomes with orthologs for BPHYT_RS02625 only