| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu1359 | | dnaK deletion suppressor protein | 1.0 | Atu1030 | | GTP pyrophosphohydrolase/synthetase, RelA/SpoT family | 0.56 | 18 |
| Rhizobium sp. OAE497 | 0.95 | ABIE40_RS10345 | | RNA polymerase-binding protein DksA | 0.85 | ABIE40_RS06050 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.51 | 95 |
| Sinorhizobium meliloti 1021 | 0.92 | SMc00469 | | DnaK suppressor protein | 0.83 | SMc02659 | | GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein | — | — |
| Rhodopseudomonas palustris CGA009 | 0.75 | TX73_020255 | | RNA polymerase-binding protein DksA | 0.58 | TX73_013955 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.80 | 1 |
| Bosea sp. OAE506 | 0.74 | ABIE41_RS13460 | | RNA polymerase-binding protein DksA | 0.59 | ABIE41_RS19890 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 77 |
| Azospirillum brasilense Sp245 | 0.66 | AZOBR_RS11245 | | molecular chaperone DnaK | 0.49 | AZOBR_RS22045 | | GTP pyrophosphokinase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.65 | Dshi_1884 | | transcriptional regulator, TraR/DksA family (RefSeq) | 0.40 | Dshi_0194 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.65 | CCNA_02663 | | DnaK suppressor protein DksA | 0.42 | CCNA_01622 | | Rsh ppGpp hydrolase-synthetase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.65 | CCNA_02663 | | DnaK suppressor protein DksA | 0.42 | CCNA_01622 | | Rsh ppGpp hydrolase-synthetase | low | > 66 |
| Magnetospirillum magneticum AMB-1 | 0.64 | AMB_RS19350 | | RNA polymerase-binding protein DksA | 0.47 | AMB_RS11400 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.64 | PGA1_c11040 | | dnaK suppressor protein DksA | 0.38 | PGA1_c01010 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase SpoT | 0.57 | 2 |
| Azospirillum sp. SherDot2 | 0.63 | MPMX19_01492 | | RNA polymerase-binding transcription factor DksA | 0.47 | MPMX19_00838 | | GTP pyrophosphokinase rsh | low | > 112 |
| Rhodospirillum rubrum S1H | 0.62 | Rru_A2847 | | Transcriptional regulators, TraR/DksA family (NCBI) | 0.46 | Rru_A1856 | | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA (NCBI) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.60 | Ga0059261_0274 | | transcriptional regulator, TraR/DksA family | 0.41 | Ga0059261_1293 | | (p)ppGpp synthetase, RelA/SpoT family | 0.87 | 12 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.60 | A4249_RS08530 | | RNA polymerase-binding protein DksA | 0.40 | A4249_RS05505 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.91 | 41 |
| Ralstonia solanacearum UW163 | 0.50 | UW163_RS03935 | | RNA polymerase-binding protein DksA | 0.30 | UW163_RS10410 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.50 | RALBFv3_RS09645 | | RNA polymerase-binding protein DksA | 0.30 | RALBFv3_RS03315 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.48 | RS_RS00230 | | RNA polymerase-binding protein DksA | 0.30 | RS_RS10800 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Burkholderia phytofirmans PsJN | 0.47 | BPHYT_RS01640 | | molecular chaperone DnaK | 0.31 | BPHYT_RS15305 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Ralstonia solanacearum PSI07 | 0.47 | RPSI07_RS23720 | | RNA polymerase-binding protein DksA | 0.30 | RPSI07_RS13870 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 81 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.47 | H281DRAFT_02205 | | transcriptional regulator, TraR/DksA family | 0.31 | H281DRAFT_04004 | | (p)ppGpp synthetase I, SpoT/RelA | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.46 | HSERO_RS00840 | | molecular chaperone DnaK | 0.32 | HSERO_RS10635 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS05100 | | RNA polymerase-binding protein DksA | 0.31 | ABZR87_RS15225 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.46 | ABIE53_000423 | | DnaK suppressor protein | 0.31 | ABIE53_003230 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 113 |
| Cupriavidus basilensis FW507-4G11 | 0.46 | RR42_RS01030 | | molecular chaperone DnaK | 0.30 | RR42_RS04920 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS00340 | | RNA polymerase-binding protein DksA | 0.30 | QEN71_RS03665 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Pseudomonas sp. RS175 | 0.45 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | 0.31 | PFR28_04424 | | Bifunctional (p)ppGpp synthase/hydrolase SpoT | — | — |
| Castellaniella sp019104865 MT123 | 0.45 | ABCV34_RS13420 | | RNA polymerase-binding protein DksA | 0.31 | ABCV34_RS03095 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.44 | AO356_16095 | | molecular chaperone DnaK | 0.31 | AO356_12480 | | (p)ppGpp synthetase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.44 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.31 | PFLU_RS29510 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | — | — |
| Pseudomonas fluorescens SBW25 | 0.44 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.31 | PFLU_RS29510 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | — | — |
| Kangiella aquimarina DSM 16071 | 0.44 | B158DRAFT_0056 | | transcriptional regulator, TraR/DksA family | 0.31 | B158DRAFT_0574 | | (p)ppGpp synthetase, RelA/SpoT family | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.44 | AO353_14420 | | molecular chaperone DnaK | 0.31 | AO353_09280 | | (p)ppGpp synthetase | — | — |
| Pseudomonas stutzeri RCH2 | 0.44 | Psest_1003 | | RNA polymerase-binding protein DksA | 0.31 | Psest_3817 | | (p)ppGpp synthetase, RelA/SpoT family | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.43 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.31 | Psyr_0209 | | RelA/SpoT protein | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.43 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | 0.31 | Pf1N1B4_2113 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.43 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.31 | Psyr_0209 | | RelA/SpoT protein | — | — |
| Pseudomonas simiae WCS417 | 0.43 | PS417_23875 | | molecular chaperone DnaK | 0.31 | PS417_27830 | | (p)ppGpp synthetase | — | — |
| Dechlorosoma suillum PS | 0.42 | Dsui_2717 | | RNA polymerase-binding protein DksA | 0.31 | Dsui_0500 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 51 |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | 0.31 | PfGW456L13_780 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | — | — |
| Pseudomonas sp. S08-1 | 0.42 | OH686_17280 | | RNA polymerase-binding protein DksA | 0.32 | OH686_13550 | | Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase / GTP pyrophosphokinase , (p)ppGpp synthetase II | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.42 | Pf6N2E2_5160 | | C4-type zinc finger protein, DksA/TraR family | 0.31 | Pf6N2E2_4361 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | — | — |
| Pseudomonas putida KT2440 | 0.42 | PP_4693 | | RNA polymerase-binding transcription factor DksA | 0.31 | PP_5302 | | bifunctional (p)ppGpp synthase/hydrolase | — | — |
| Marinobacter adhaerens HP15 | 0.41 | HP15_332 | | transcriptional regulator, TraR/DksA family | 0.30 | HP15_305 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Shewanella amazonensis SB2B | 0.41 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.31 | Sama_0264 | | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.30 | Shewana3_3812 | | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) | low | > 73 |
| Pantoea sp. MT58 | 0.41 | IAI47_15635 | | RNA polymerase-binding protein DksA | 0.31 | IAI47_00510 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | low | > 76 |
| Klebsiella michiganensis M5al | 0.41 | BWI76_RS05015 | | transcriptional regulator | 0.30 | BWI76_RS27430 | | (p)ppGpp synthetase | low | > 92 |
| Shewanella oneidensis MR-1 | 0.41 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | 0.30 | SO0359 | spoT | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (NCBI ptt file) | — | — |
| Shewanella loihica PV-4 | 0.41 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.30 | Shew_3499 | | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) | — | — |
| Alteromonas macleodii MIT1002 | 0.40 | MIT1002_03690 | | DnaK suppressor protein | 0.31 | MIT1002_00108 | | Bifunctional (p)ppGpp synthase/hydrolase SpoT | low | > 70 |
| Vibrio cholerae E7946 ATCC 55056 | 0.38 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 0.29 | CSW01_13675 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase | low | > 62 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.36 | DVU2150 | dksA | dnaK suppressor protein, putative (TIGR) | 0.35 | DVU2083 | relA | GTP pyrophosphokinase (TIGR) | 0.59 | 1 |
| Desulfovibrio vulgaris Miyazaki F | 0.35 | DvMF_0008 | | transcriptional regulator, TraR/DksA family (RefSeq) | 0.33 | DvMF_0787 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | — | — |
Not shown: 0 genomes with orthologs for Atu1359 only; 48 genomes with orthologs for Atu1030 only