| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Ralstonia sp. UNC404CL21Col | 1.0 | ABZR87_RS08765 | | TolC family outer membrane protein | 1.0 | ABZR87_RS06610 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.44 | 19 |
| Ralstonia solanacearum PSI07 | 0.83 | RPSI07_RS20545 | | channel protein TolC | 0.85 | RPSI07_RS22545 | | D-alanyl-D-alanine carboxypeptidase | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.82 | RALBFv3_RS12715 | | channel protein TolC | 0.85 | RALBFv3_RS10770 | | D-alanyl-D-alanine carboxypeptidase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.82 | UW163_RS00850 | | channel protein TolC | 0.85 | UW163_RS02810 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Ralstonia solanacearum GMI1000 | 0.82 | RS_RS03495 | | channel protein TolC | 0.83 | RS_RS01610 | | D-alanyl-D-alanine carboxypeptidase | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.53 | RR42_RS15670 | | channel protein TolC | 0.66 | RR42_RS01680 | | cytochrome C550 | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.39 | H281DRAFT_00100 | | outer membrane protein | 0.57 | H281DRAFT_02054 | | penicillin-binding protein 6. Serine peptidase. MEROPS family S11 | low | > 103 |
| Dechlorosoma suillum PS | 0.38 | Dsui_0405 | | type I secretion outer membrane protein, TolC family | 0.51 | Dsui_0899 | | D-alanyl-D-alanine carboxypeptidase | low | > 51 |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS21375 | | TolC family outer membrane protein | 0.41 | ABID97_RS00695 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.32 | GFF5765 | | Type I secretion outer membrane protein, TolC precursor | 0.40 | GFF1806 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 90 |
| Variovorax sp. SCN45 | 0.30 | GFF6530 | | Type I secretion outer membrane protein, TolC family | 0.42 | GFF3627 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.30 | Ac3H11_2219 | | Type I secretion outer membrane protein, TolC precursor | 0.42 | Ac3H11_2142 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.25 | AO356_08815 | | channel protein TolC | 0.38 | AO356_15330 | | D-alanyl-D-alanine carboxypeptidase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.25 | Pf6N2E2_3645 | | Type I secretion outer membrane protein, TolC precursor | 0.38 | Pf6N2E2_5001 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.25 | Pf1N1B4_1448 | | Type I secretion outer membrane protein, TolC precursor | 0.38 | Pf1N1B4_2696 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.24 | Psyr_0543 | | Type I secretion outer membrane protein, TolC | 0.39 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.24 | Psyr_0543 | | Type I secretion outer membrane protein, TolC | 0.39 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.24 | PfGW456L13_188 | | Type I secretion outer membrane protein, TolC precursor | 0.38 | PfGW456L13_1364 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.24 | AO353_13005 | | channel protein TolC | 0.39 | AO353_06455 | | D-alanyl-D-alanine carboxypeptidase | low | > 101 |
| Pseudomonas sp. RS175 | 0.24 | PFR28_05090 | | Outer membrane protein TolC | 0.39 | PFR28_03864 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 88 |
| Pseudomonas simiae WCS417 | 0.24 | PS417_02350 | | channel protein TolC | 0.40 | PS417_24705 | | D-alanyl-D-alanine carboxypeptidase | low | > 88 |
| Dyella japonica UNC79MFTsu3.2 | 0.24 | ABZR86_RS17210 | | TolC family outer membrane protein | 0.40 | ABZR86_RS17490 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Pseudomonas fluorescens SBW25 | 0.24 | PFLU_RS02425 | | TolC family outer membrane protein | 0.40 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.24 | PFLU_RS02425 | | TolC family outer membrane protein | 0.40 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | low | > 109 |
| Pseudomonas putida KT2440 | 0.23 | PP_4923 | | Outer membrane efflux protein | 0.39 | PP_4803 | | D-alanyl-D-alanine carboxypeptidase | low | > 96 |
| Kangiella aquimarina DSM 16071 | 0.23 | B158DRAFT_0973 | | type I secretion outer membrane protein, TolC family | 0.39 | B158DRAFT_0079 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Lysobacter sp. OAE881 | 0.23 | ABIE51_RS17615 | | TolC family outer membrane protein | 0.40 | ABIE51_RS03165 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 62 |
| Marinobacter adhaerens HP15 | 0.23 | HP15_451 | | type I secretion outer membrane protein, TolC family | 0.40 | HP15_608 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Pseudomonas sp. S08-1 | 0.23 | OH686_15890 | | Outer membrane channel TolC (OpmH) | 0.39 | OH686_09300 | | D-alanyl-D-alanine carboxypeptidase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.23 | Psest_0476 | | type I secretion outer membrane protein, TolC family | 0.41 | Psest_0516 | | D-alanyl-D-alanine carboxypeptidase | low | > 67 |
| Rhodanobacter denitrificans MT42 | 0.22 | LRK55_RS06430 | | TolC family outer membrane protein | 0.38 | LRK55_RS06235 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.22 | Xcc-8004.1042.1 | | Type I secretion outer membrane protein, TolC precursor | 0.36 | Xcc-8004.907.1 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Rhodanobacter sp. FW510-T8 | 0.22 | OKGIIK_16950 | tolC | Outer membrane protein TolC | 0.37 | OKGIIK_00090 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.22 | LRK54_RS06685 | | TolC family outer membrane protein | 0.38 | LRK54_RS06490 | | D-alanyl-D-alanine carboxypeptidase | low | > 59 |
| Erwinia tracheiphila SCR3 | 0.22 | LU632_RS20635 | tolC | outer membrane channel protein TolC | 0.33 | LU632_RS16390 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | — | — |
| Alteromonas macleodii MIT1002 | 0.22 | MIT1002_00670 | | Outer membrane protein TolC precursor | 0.38 | MIT1002_01848 | | D-alanyl-D-alanine carboxypeptidase DacC precursor | — | — |
| Shewanella sp. ANA-3 | 0.21 | Shewana3_0725 | tolC | outer membrane channel protein (RefSeq) | 0.36 | Shewana3_0991 | | penicillin-binding protein 6 (RefSeq) | low | > 73 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.21 | OHPLBJKB_00668 | | Outer membrane protein TolC | 0.35 | OHPLBJKB_02871 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 73 |
| Escherichia coli ECOR38 | 0.21 | HEPCGN_17680 | tolC | outer membrane channel protein TolC | 0.35 | HEPCGN_01990 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 87 |
| Dickeya dianthicola 67-19 | 0.21 | HGI48_RS01635 | | outer membrane channel protein TolC | 0.36 | HGI48_RS09435 | | serine hydrolase | low | > 71 |
| Escherichia coli ECOR27 | 0.21 | NOLOHH_10610 | tolC | outer membrane channel protein TolC | 0.35 | NOLOHH_22410 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 75 |
| Escherichia coli ECRC62 | 0.21 | BNILDI_00905 | tolC | outer membrane channel protein TolC | 0.35 | BNILDI_20670 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 75 |
| Escherichia coli BW25113 | 0.21 | b3035 | tolC | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | 0.35 | b0839 | dacC | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) | low | > 76 |
| Dickeya dadantii 3937 | 0.21 | DDA3937_RS01740 | | outer membrane channel protein TolC | 0.35 | DDA3937_RS09420 | | serine hydrolase | low | > 74 |
| Escherichia coli BL21 | 0.21 | ECD_02907 | | transport channel | 0.35 | ECD_00806 | | D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a | low | > 61 |
| Pantoea sp. MT58 | 0.21 | IAI47_03135 | | outer membrane channel protein TolC | 0.36 | IAI47_13090 | | serine hydrolase | low | > 76 |
| Escherichia coli ECRC99 | 0.21 | KEDOAH_09340 | tolC | outer membrane channel protein TolC | 0.35 | KEDOAH_21870 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli ECRC98 | 0.21 | JDDGAC_22440 | tolC | outer membrane channel protein TolC | 0.35 | JDDGAC_09675 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 86 |
| Escherichia coli ECRC101 | 0.21 | MCAODC_09320 | tolC | outer membrane channel protein TolC | 0.35 | MCAODC_25255 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 87 |
| Escherichia coli ECRC102 | 0.21 | NIAGMN_16570 | tolC | outer membrane channel protein TolC | 0.35 | NIAGMN_04085 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli Nissle 1917 | 0.21 | ECOLIN_RS17515 | | outer membrane channel protein TolC | 0.35 | ECOLIN_RS04460 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli ECRC100 | 0.21 | OKFHMN_18805 | tolC | outer membrane channel protein TolC | 0.35 | OKFHMN_06040 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 80 |
| Dickeya dianthicola ME23 | 0.21 | DZA65_RS01710 | | outer membrane channel protein TolC | 0.35 | DZA65_RS09745 | | D-alanyl-D-alanine carboxypeptidase | low | > 75 |
| Escherichia fergusonii Becca | 0.21 | EFB2_00773 | | Outer membrane protein TolC | 0.35 | EFB2_03267 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 86 |
| Vibrio cholerae E7946 ATCC 55056 | 0.21 | CSW01_12335 | | outer membrane protein TolC | 0.35 | CSW01_04845 | | D-alanyl-D-alanine carboxypeptidase | low | > 62 |
| Pectobacterium carotovorum WPP14 | 0.20 | HER17_RS14085 | | TolC family outer membrane protein | 0.35 | HER17_RS12545 | | serine hydrolase | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.20 | GFF3149 | | Type I secretion outer membrane protein, TolC precursor | 0.32 | GFF744 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 78 |
| Shewanella oneidensis MR-1 | 0.20 | SO3904 | tolC | outer membrane protein TolC (NCBI ptt file) | 0.36 | SO1164 | dacA-1 | D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) | — | — |
| Klebsiella michiganensis M5al | 0.20 | BWI76_RS24400 | | outer membrane channel protein TolC | 0.35 | BWI76_RS09145 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 92 |
| Enterobacter sp. TBS_079 | 0.19 | MPMX20_03882 | | Outer membrane protein TolC | 0.34 | MPMX20_01477 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 85 |
| Rahnella sp. WP5 | 0.19 | EX31_RS08100 | | outer membrane channel protein TolC | 0.35 | EX31_RS09695 | | D-alanyl-D-alanine carboxypeptidase | low | > 89 |
| Enterobacter asburiae PDN3 | 0.19 | EX28DRAFT_3073 | | type I secretion outer membrane protein, TolC family | 0.34 | EX28DRAFT_2127 | | D-alanyl-D-alanine carboxypeptidase | low | > 76 |
| Serratia liquefaciens MT49 | 0.18 | IAI46_21945 | | outer membrane channel protein TolC | 0.33 | IAI46_08285 | | serine hydrolase | low | > 86 |
| Shewanella amazonensis SB2B | 0.18 | Sama_3048 | tolC | outer membrane channel protein (RefSeq) | 0.35 | Sama_2592 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.18 | Shew_0544 | tolC | outer membrane channel protein (RefSeq) | 0.37 | Shew_2939 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | low | > 60 |
| Acinetobacter radioresistens SK82 | 0.16 | MPMX26_00182 | | Outer membrane protein TolC | 0.35 | MPMX26_01051 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 36 |
| Azospirillum sp. SherDot2 | 0.12 | MPMX19_01309 | | Outer membrane efflux protein BepC | 0.31 | MPMX19_01465 | | D-alanyl-D-alanine carboxypeptidase DacC | — | — |
| Magnetospirillum magneticum AMB-1 | 0.10 | AMB_RS11360 | | membrane protein | 0.29 | AMB_RS12315 | | D-alanyl-D-alanine carboxypeptidase | low | > 64 |
| Rhodopseudomonas palustris CGA009 | 0.10 | TX73_009310 | | TolC family outer membrane protein | 0.24 | TX73_014370 | | D-alanyl-D-alanine carboxypeptidase | low | > 86 |
| Sphingomonas koreensis DSMZ 15582 | 0.10 | Ga0059261_3040 | | type I secretion outer membrane protein, TolC family | 0.26 | Ga0059261_0122 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Sinorhizobium meliloti 1021 | 0.09 | SMc02082 | | outer membrane secretion protein | 0.23 | SMc01188 | | penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein | — | — |
| Bosea sp. OAE506 | 0.09 | ABIE41_RS15655 | | TolC family outer membrane protein | 0.25 | ABIE41_RS15965 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Paraburkholderia graminis OAS925 | 0.07 | ABIE53_004979 | | outer membrane protein | 0.59 | ABIE53_000626 | | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) | low | > 113 |
| Phaeobacter inhibens DSM 17395 | 0.06 | PGA1_c24020 | | putative outer membrane efflux protein | 0.25 | PGA1_c08020 | | D-alanyl-D-alanine carboxypeptidase DacC | — | — |
Not shown: 9 genomes with orthologs for ABZR87_RS08765 only; 8 genomes with orthologs for ABZR87_RS06610 only