| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Ralstonia sp. UNC404CL21Col | 1.0 | ABZR87_RS13545 | | amino acid permease | 1.0 | ABZR87_RS05315 | | efflux RND transporter permease subunit | 0.48 | 6 |
| Ralstonia solanacearum PSI07 | 0.91 | RPSI07_RS15760 | | amino acid permease | 0.92 | RPSI07_RS23905 | | hydrophobe/amphiphile efflux-1 family RND transporter | low | > 81 |
| Ralstonia solanacearum UW163 | 0.90 | UW163_RS15035 | | amino acid permease | 0.91 | UW163_RS04135 | | multidrug efflux RND transporter permease subunit | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.90 | RALBFv3_RS01725 | | amino acid permease | 0.91 | RALBFv3_RS09445 | | multidrug efflux RND transporter permease subunit | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.88 | RS_RS08000 | | amino acid permease | 0.92 | RS_RS00045 | | multidrug efflux RND transporter permease subunit | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.79 | RR42_RS01585 | | amino acid permease | 0.64 | RR42_RS20650 | | multidrug efflux RND transporter permease subunit | low | > 128 |
| Paraburkholderia graminis OAS925 | 0.73 | ABIE53_000447 | | APA family basic amino acid/polyamine antiporter | 0.58 | ABIE53_003408 | | multidrug efflux pump | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.71 | QEN71_RS00500 | | amino acid permease | 0.58 | QEN71_RS02525 | | efflux RND transporter permease subunit | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.71 | H281DRAFT_02180 | | amino acid/polyamine/organocation transporter, APC superfamily | 0.58 | H281DRAFT_04170 | | multidrug efflux pump | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.69 | BPHYT_RS01785 | | amino acid permease | 0.57 | BPHYT_RS16170 | | multidrug efflux RND transporter permease subunit | — | — |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_05010 | potE | amino acid permease | 0.48 | OKGIIK_09170 | | Efflux pump membrane transporter | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS06670 | | amino acid permease | 0.55 | ABZR86_RS18285 | | efflux RND transporter permease subunit | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.45 | CA265_RS17395 | | amino acid transporter | 0.34 | CA265_RS05045 | | hydrophobe/amphiphile efflux-1 family RND transporter | low | > 88 |
| Rhodanobacter denitrificans FW104-10B01 | 0.45 | LRK54_RS01525 | | amino acid permease | 0.46 | LRK54_RS02100 | | multidrug efflux RND transporter permease subunit | 0.32 | 52 |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS01315 | | amino acid permease | 0.46 | LRK55_RS01875 | | multidrug efflux RND transporter permease subunit | low | > 63 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.2936.1 | | Amino acid transporters | 0.54 | Xcc-8004.1794.1 | | RND efflux system, inner membrane transporter CmeB | low | > 74 |
| Parabacteroides merdae CL09T00C40 | 0.43 | HMPREF1078_RS09620 | | amino acid permease | 0.37 | HMPREF1078_RS07690 | | multidrug efflux RND transporter permease subunit | low | > 61 |
| Phocaeicola vulgatus CL09T03C04 | 0.43 | HMPREF1058_RS13815 | | amino acid permease | 0.38 | HMPREF1058_RS02440 | | multidrug efflux RND transporter permease subunit | low | > 67 |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS13265 | | amino acid permease | 0.48 | ABIE51_RS17980 | | multidrug efflux RND transporter permease subunit | low | > 62 |
| Caulobacter crescentus NA1000 | 0.42 | CCNA_01242 | | amino acid permease | 0.55 | CCNA_00850 | | cation/multidrug efflux pump acrB2 | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.42 | CCNA_01242 | | amino acid permease | 0.55 | CCNA_00850 | | cation/multidrug efflux pump acrB2 | low | > 67 |
| Rhodopseudomonas palustris CGA009 | 0.42 | TX73_003040 | | amino acid permease | 0.57 | TX73_020235 | | efflux RND transporter permease subunit | low | > 86 |
| Sphingomonas koreensis DSMZ 15582 | 0.41 | Ga0059261_1053 | | amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3) | 0.46 | Ga0059261_0559 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | low | > 68 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.39 | ABZR88_RS11630 | | amino acid permease | 0.36 | ABZR88_RS12545 | | efflux RND transporter permease subunit | low | > 71 |
| Bosea sp. OAE506 | 0.14 | ABIE41_RS20970 | | APC family permease | 0.53 | ABIE41_RS01595 | | efflux RND transporter permease subunit | low | > 77 |
| Serratia liquefaciens MT49 | 0.13 | IAI46_17155 | | APC family permease | 0.55 | IAI46_05185 | | multidrug efflux RND transporter permease subunit SdeY | low | > 86 |
| Pseudomonas putida KT2440 | 0.13 | PP_0544 | | Ethanolamine transporter | 0.61 | PP_3456 | | Multidrug resistance protein MexB | low | > 96 |
| Pseudomonas fluorescens FW300-N2E2 | 0.12 | Pf6N2E2_2179 | | Putrescine importer | 0.62 | Pf6N2E2_1661 | | RND efflux system, inner membrane transporter CmeB | low | > 103 |
| Pseudomonas sp. RS175 | 0.12 | PFR28_01269 | | Putrescine importer PuuP | 0.62 | PFR28_02463 | | Multidrug resistance protein MexB | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.12 | Pf1N1B4_5855 | | Putrescine importer | 0.63 | Pf1N1B4_4772 | | RND efflux system, inner membrane transporter CmeB | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.12 | Psest_0670 | | ethanolamine permease | 0.53 | Psest_0310 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | low | > 67 |
| Pectobacterium carotovorum WPP14 | 0.12 | HER17_RS12140 | | APC family permease | 0.57 | HER17_RS15740 | | multidrug efflux RND transporter permease subunit | low | > 75 |
| Dickeya dianthicola 67-19 | 0.12 | HGI48_RS09825 | | APC family permease | 0.55 | HGI48_RS05790 | | multidrug efflux RND transporter permease subunit | low | > 71 |
| Rahnella sp. WP5 | 0.12 | EX31_RS20130 | | ethanolamine permease | 0.58 | EX31_RS22470 | | multidrug efflux RND transporter permease subunit | 0.31 | 55 |
| Pseudomonas fluorescens FW300-N2C3 | 0.12 | AO356_01520 | | porin | 0.62 | AO356_28730 | | acriflavine resistance protein B | low | > 104 |
| Dickeya dadantii 3937 | 0.12 | DDA3937_RS09815 | | APC family permease | 0.56 | DDA3937_RS05735 | | multidrug efflux RND transporter permease subunit | low | > 74 |
| Pseudomonas fluorescens FW300-N2E3 | 0.12 | AO353_27910 | | porin | 0.63 | AO353_26845 | | acriflavine resistance protein B | low | > 101 |
| Dickeya dianthicola ME23 | 0.12 | DZA65_RS10150 | | APC family permease | 0.55 | DZA65_RS06115 | | multidrug efflux RND transporter permease subunit | low | > 75 |
| Shewanella sp. ANA-3 | 0.12 | Shewana3_3634 | | amino acid permease-associated region (RefSeq) | 0.55 | Shewana3_4045 | | hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) | low | > 73 |
| Klebsiella michiganensis M5al | 0.12 | BWI76_RS03640 | | amino acid permease-associated protein | 0.58 | BWI76_RS06775 | | multidrug efflux RND transporter permease subunit | low | > 92 |
| Shewanella oneidensis MR-1 | 0.12 | SO4081 | | amino acid permease (NCBI ptt file) | 0.56 | SO4692 | | AcrB/AcrD/AcrF family protein (NCBI ptt file) | low | > 76 |
| Acinetobacter radioresistens SK82 | 0.11 | MPMX26_01769 | | putative amino acid permease YhdG | 0.50 | MPMX26_00689 | | Multidrug resistance protein MexB | — | — |
| Herbaspirillum seropedicae SmR1 | 0.11 | HSERO_RS12590 | | ethanolamin permease | 0.77 | HSERO_RS02410 | | acriflavine resistance protein B | low | > 78 |
| Rhizobium sp. OAE497 | 0.11 | ABIE40_RS17315 | | APC family permease | 0.52 | ABIE40_RS24225 | | efflux RND transporter permease subunit | low | > 107 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.11 | OHPLBJKB_02386 | | Putrescine importer PuuP | 0.57 | OHPLBJKB_00439 | | Multidrug export protein AcrF | low | > 73 |
| Escherichia coli ECOR27 | 0.11 | NOLOHH_20135 | puuP | putrescine/proton symporter PuuP | 0.57 | NOLOHH_09440 | acrF | multidrug efflux RND transporter permease subunit AcrF | low | > 75 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.11 | Psyr_2379 | | amino acid/polyamine/organocation transporter, APC superfamily | 0.56 | Psyr_2282 | | Hydrophobe/amphiphile efflux-1 HAE1 | low | > 86 |
| Escherichia coli BL21 | 0.11 | ECD_01273 | | putrescine importer | 0.57 | ECD_03124 | | multidrug efflux system protein | low | > 61 |
| Escherichia coli BW25113 | 0.11 | b1296 | ycjJ | putative amino acid/amine transport protein (VIMSS) | 0.57 | b3266 | acrF | multidrug efflux system protein (NCBI) | low | > 76 |
| Pseudomonas syringae pv. syringae B728a | 0.11 | Psyr_2379 | | amino acid/polyamine/organocation transporter, APC superfamily | 0.56 | Psyr_2282 | | Hydrophobe/amphiphile efflux-1 HAE1 | low | > 86 |
| Escherichia coli ECRC62 | 0.11 | BNILDI_18285 | puuP | putrescine/proton symporter PuuP | 0.57 | BNILDI_02080 | acrF | multidrug efflux RND transporter permease subunit AcrF | low | > 75 |
| Escherichia coli ECRC98 | 0.11 | JDDGAC_04995 | puuP | putrescine/proton symporter PuuP | 0.54 | JDDGAC_25915 | acrD | multidrug efflux RND transporter permease AcrD | low | > 86 |
| Enterobacter asburiae PDN3 | 0.11 | EX28DRAFT_1496 | | Amino acid transporters | 0.57 | EX28DRAFT_2496 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | low | > 76 |
| Escherichia coli ECRC100 | 0.11 | OKFHMN_02450 | puuP | putrescine/proton symporter PuuP | 0.57 | OKFHMN_08205 | acrB | efflux RND transporter permease AcrB | low | > 80 |
| Escherichia coli ECRC101 | 0.11 | MCAODC_15820 | puuP | putrescine/proton symporter PuuP | 0.57 | MCAODC_27430 | acrB | efflux RND transporter permease AcrB | low | > 87 |
| Escherichia coli ECRC102 | 0.11 | NIAGMN_26620 | puuP | putrescine/proton symporter PuuP | 0.57 | NIAGMN_06260 | acrB | efflux RND transporter permease AcrB | — | — |
| Escherichia coli ECRC99 | 0.11 | KEDOAH_26325 | puuP | putrescine/proton symporter PuuP | 0.57 | KEDOAH_19760 | acrB | efflux RND transporter permease AcrB | — | — |
| Escherichia coli Nissle 1917 | 0.11 | ECOLIN_RS11915 | | putrescine/proton symporter PlaP | 0.57 | ECOLIN_RS18755 | | multidrug efflux RND transporter permease subunit AcrF | low | > 55 |
| Pantoea sp. MT58 | 0.11 | IAI47_07130 | | APC family permease | 0.56 | IAI47_14515 | | multidrug efflux RND transporter permease subunit | low | > 76 |
| Enterobacter sp. TBS_079 | 0.11 | MPMX20_02998 | | Low-affinity putrescine importer PlaP | 0.58 | MPMX20_01064 | | Multidrug efflux pump subunit AcrB | low | > 85 |
| Escherichia fergusonii Becca | 0.10 | EFB2_01842 | | Low-affinity putrescine importer PlaP | 0.57 | EFB2_00558 | | Multidrug export protein AcrF | low | > 86 |
| Escherichia coli ECOR38 | 0.10 | HEPCGN_03255 | plaP | putrescine/proton symporter PlaP | 0.57 | HEPCGN_06820 | acrB | efflux RND transporter permease AcrB | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.10 | GFF3916 | | Putrescine importer | 0.57 | GFF4379 | | RND efflux system, inner membrane transporter CmeB | low | > 78 |
| Variovorax sp. OAS795 | 0.10 | ABID97_RS19505 | | ethanolamine permease | 0.67 | ABID97_RS00325 | | efflux RND transporter permease subunit | low | > 91 |
| Azospirillum sp. SherDot2 | 0.10 | MPMX19_05701 | | Putrescine transporter PotE | 0.57 | MPMX19_05884 | | Multidrug efflux pump subunit AcrB | low | > 112 |
| Rhodospirillum rubrum S1H | 0.10 | Rru_A1030 | | Amino acid permease-associated region (NCBI) | 0.57 | Rru_A1118 | | Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) | low | > 58 |
| Agrobacterium fabrum C58 | 0.09 | Atu2143 | | ABC transporter, membrane spanning protein (amino acid) | 0.59 | Atu3202 | | RND multidrug efflux transporter | low | > 89 |
| Pseudomonas sp. S08-1 | 0.09 | OH686_03555 | | Lysine/cadaverine antiporter membrane protein CadB | 0.54 | OH686_16050 | | Multidrug efflux system, inner membrane proton/drug antiporter (RND type) | low | > 80 |
| Sinorhizobium meliloti 1021 | 0.08 | SMc02616 | | permease transmembrane protein | 0.63 | SMc02867 | | multidrug-efflux system transmembrane protein | low | > 103 |
| Marinobacter adhaerens HP15 | 0.08 | HP15_180 | | amino acid transporter | 0.40 | HP15_933 | | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family | low | > 73 |
Not shown: 5 genomes with orthologs for ABZR87_RS13545 only; 21 genomes with orthologs for ABZR87_RS05315 only