| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Ralstonia sp. UNC404CL21Col | 1.0 | ABZR87_RS13545 | | amino acid permease | 1.0 | ABZR87_RS05310 | | efflux RND transporter periplasmic adaptor subunit | 0.49 | 5 |
| Ralstonia solanacearum PSI07 | 0.91 | RPSI07_RS15760 | | amino acid permease | 0.76 | RPSI07_RS23900 | | efflux RND transporter periplasmic adaptor subunit | low | > 81 |
| Ralstonia solanacearum UW163 | 0.90 | UW163_RS15035 | | amino acid permease | 0.75 | UW163_RS04130 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.90 | RALBFv3_RS01725 | | amino acid permease | 0.75 | RALBFv3_RS09450 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.88 | RS_RS08000 | | amino acid permease | 0.73 | RS_RS00050 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.79 | RR42_RS01585 | | amino acid permease | 0.47 | RR42_RS20645 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | — | — |
| Paraburkholderia graminis OAS925 | 0.73 | ABIE53_000447 | | APA family basic amino acid/polyamine antiporter | 0.41 | ABIE53_003409 | | membrane fusion protein (multidrug efflux system) | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.71 | QEN71_RS00500 | | amino acid permease | 0.45 | QEN71_RS29870 | | efflux RND transporter periplasmic adaptor subunit | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.71 | H281DRAFT_02180 | | amino acid/polyamine/organocation transporter, APC superfamily | 0.41 | H281DRAFT_04171 | | membrane fusion protein, multidrug efflux system | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.69 | BPHYT_RS01785 | | amino acid permease | 0.42 | BPHYT_RS16175 | | hemolysin D | low | > 109 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_05010 | potE | amino acid permease | 0.39 | OKGIIK_09165 | acrA | efflux transporter periplasmic adaptor subunit | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS06670 | | amino acid permease | 0.40 | ABZR86_RS18280 | | efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.45 | CA265_RS17395 | | amino acid transporter | 0.21 | CA265_RS23015 | | efflux transporter periplasmic adaptor subunit | low | > 88 |
| Rhodanobacter denitrificans FW104-10B01 | 0.45 | LRK54_RS01525 | | amino acid permease | 0.38 | LRK54_RS02095 | | efflux RND transporter periplasmic adaptor subunit | 0.33 | 44 |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS01315 | | amino acid permease | 0.38 | LRK55_RS01870 | | efflux RND transporter periplasmic adaptor subunit | low | > 63 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.2936.1 | | Amino acid transporters | 0.42 | Xcc-8004.1793.1 | | RND efflux system, membrane fusion protein CmeA | low | > 74 |
| Parabacteroides merdae CL09T00C40 | 0.43 | HMPREF1078_RS09620 | | amino acid permease | 0.23 | HMPREF1078_RS00005 | | efflux RND transporter periplasmic adaptor subunit | low | > 61 |
| Phocaeicola vulgatus CL09T03C04 | 0.43 | HMPREF1058_RS13815 | | amino acid permease | 0.21 | HMPREF1058_RS05165 | | efflux RND transporter periplasmic adaptor subunit | low | > 67 |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS13265 | | amino acid permease | 0.33 | ABIE51_RS17985 | | efflux RND transporter periplasmic adaptor subunit | low | > 62 |
| Caulobacter crescentus NA1000 Δfur | 0.42 | CCNA_01242 | | amino acid permease | 0.37 | CCNA_00851 | | periplasmic multidrug efflux lipoprotein precursor | low | > 67 |
| Rhodopseudomonas palustris CGA009 | 0.42 | TX73_003040 | | amino acid permease | 0.39 | TX73_014170 | | efflux RND transporter periplasmic adaptor subunit | low | > 86 |
| Caulobacter crescentus NA1000 | 0.42 | CCNA_01242 | | amino acid permease | 0.37 | CCNA_00851 | | periplasmic multidrug efflux lipoprotein precursor | low | > 66 |
| Sphingomonas koreensis DSMZ 15582 | 0.41 | Ga0059261_1053 | | amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3) | 0.34 | Ga0059261_0560 | | RND family efflux transporter, MFP subunit | low | > 68 |
| Bosea sp. OAE506 | 0.14 | ABIE41_RS20970 | | APC family permease | 0.34 | ABIE41_RS01600 | | efflux RND transporter periplasmic adaptor subunit | low | > 77 |
| Pseudomonas putida KT2440 | 0.13 | PP_0544 | | Ethanolamine transporter | 0.40 | PP_1386 | | Probable efflux pump periplasmic linker TtgA | low | > 96 |
| Serratia liquefaciens MT49 | 0.13 | IAI46_17155 | | APC family permease | 0.43 | IAI46_05190 | | multidrug efflux RND transporter periplasmic adaptor subunit SdeX | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.12 | Pf1N1B4_5855 | | Putrescine importer | 0.39 | Pf1N1B4_4773 | | RND efflux system, membrane fusion protein CmeA | — | — |
| Pectobacterium carotovorum WPP14 | 0.12 | HER17_RS12140 | | APC family permease | 0.42 | HER17_RS15735 | | efflux RND transporter periplasmic adaptor subunit | low | > 75 |
| Pseudomonas stutzeri RCH2 | 0.12 | Psest_0670 | | ethanolamine permease | 0.38 | Psest_0309 | | RND family efflux transporter, MFP subunit | low | > 67 |
| Pseudomonas sp. RS175 | 0.12 | PFR28_01269 | | Putrescine importer PuuP | 0.40 | PFR28_02462 | | Multidrug resistance protein MexA | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.12 | Pf6N2E2_2179 | | Putrescine importer | 0.40 | Pf6N2E2_1660 | | RND efflux system, membrane fusion protein CmeA | low | > 103 |
| Dickeya dianthicola 67-19 | 0.12 | HGI48_RS09825 | | APC family permease | 0.43 | HGI48_RS05795 | | efflux RND transporter periplasmic adaptor subunit | low | > 71 |
| Pseudomonas fluorescens FW300-N2C3 | 0.12 | AO356_01520 | | porin | 0.40 | AO356_28725 | | RND transporter | — | — |
| Rahnella sp. WP5 | 0.12 | EX31_RS20130 | | ethanolamine permease | 0.43 | EX31_RS22475 | | efflux RND transporter periplasmic adaptor subunit | low | > 89 |
| Pseudomonas fluorescens FW300-N2E3 | 0.12 | AO353_27910 | | porin | 0.40 | AO353_26840 | | RND transporter | low | > 101 |
| Dickeya dadantii 3937 | 0.12 | DDA3937_RS09815 | | APC family permease | 0.43 | DDA3937_RS05740 | | efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Dickeya dianthicola ME23 | 0.12 | DZA65_RS10150 | | APC family permease | 0.43 | DZA65_RS06120 | | efflux RND transporter periplasmic adaptor subunit | low | > 75 |
| Shewanella sp. ANA-3 | 0.12 | Shewana3_3634 | | amino acid permease-associated region (RefSeq) | 0.38 | Shewana3_4046 | | RND family efflux transporter MFP subunit (RefSeq) | low | > 73 |
| Klebsiella michiganensis M5al | 0.12 | BWI76_RS03640 | | amino acid permease-associated protein | 0.45 | BWI76_RS06780 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | low | > 92 |
| Shewanella oneidensis MR-1 | 0.12 | SO4081 | | amino acid permease (NCBI ptt file) | 0.38 | SO4693 | | multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) | low | > 76 |
| Acinetobacter radioresistens SK82 | 0.11 | MPMX26_01769 | | putative amino acid permease YhdG | 0.37 | MPMX26_00690 | | Multidrug efflux pump subunit AcrA | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.11 | Psyr_2379 | | amino acid/polyamine/organocation transporter, APC superfamily | 0.39 | Psyr_4007 | | Secretion protein HlyD | low | > 86 |
| Rhizobium sp. OAE497 | 0.11 | ABIE40_RS17315 | | APC family permease | 0.35 | ABIE40_RS24220 | | efflux RND transporter periplasmic adaptor subunit | low | > 107 |
| Herbaspirillum seropedicae SmR1 | 0.11 | HSERO_RS12590 | | ethanolamin permease | 0.53 | HSERO_RS02415 | | hemolysin D | low | > 78 |
| Escherichia coli BW25113 | 0.11 | b1296 | ycjJ | putative amino acid/amine transport protein (VIMSS) | 0.44 | b0463 | acrA | multidrug efflux system (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.11 | NOLOHH_20135 | puuP | putrescine/proton symporter PuuP | 0.44 | NOLOHH_01135 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | low | > 75 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.11 | Psyr_2379 | | amino acid/polyamine/organocation transporter, APC superfamily | 0.39 | Psyr_4007 | | Secretion protein HlyD | low | > 86 |
| Escherichia coli BL21 | 0.11 | ECD_01273 | | putrescine importer | 0.44 | ECD_00414 | | multidrug efflux system | low | > 61 |
| Escherichia coli ECRC62 | 0.11 | BNILDI_18285 | puuP | putrescine/proton symporter PuuP | 0.44 | BNILDI_22550 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.11 | OHPLBJKB_02386 | | Putrescine importer PuuP | 0.44 | OHPLBJKB_03211 | | Multidrug efflux pump subunit AcrA | low | > 73 |
| Escherichia coli ECRC101 | 0.11 | MCAODC_15820 | puuP | putrescine/proton symporter PuuP | 0.44 | MCAODC_27425 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | low | > 87 |
| Enterobacter asburiae PDN3 | 0.11 | EX28DRAFT_1496 | | Amino acid transporters | 0.42 | EX28DRAFT_2495 | | RND family efflux transporter, MFP subunit | low | > 76 |
| Escherichia coli ECRC102 | 0.11 | NIAGMN_26620 | puuP | putrescine/proton symporter PuuP | 0.44 | NIAGMN_06255 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Escherichia coli ECRC99 | 0.11 | KEDOAH_26325 | puuP | putrescine/proton symporter PuuP | 0.44 | KEDOAH_19765 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Escherichia coli ECRC100 | 0.11 | OKFHMN_02450 | puuP | putrescine/proton symporter PuuP | 0.44 | OKFHMN_08200 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | low | > 80 |
| Escherichia coli ECRC98 | 0.11 | JDDGAC_04995 | puuP | putrescine/proton symporter PuuP | 0.44 | JDDGAC_11850 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | low | > 86 |
| Escherichia coli Nissle 1917 | 0.11 | ECOLIN_RS11915 | | putrescine/proton symporter PlaP | 0.44 | ECOLIN_RS02755 | | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Pantoea sp. MT58 | 0.11 | IAI47_07130 | | APC family permease | 0.43 | IAI47_14510 | | efflux RND transporter periplasmic adaptor subunit | low | > 76 |
| Enterobacter sp. TBS_079 | 0.11 | MPMX20_02998 | | Low-affinity putrescine importer PlaP | 0.44 | MPMX20_01065 | | Multidrug efflux pump subunit AcrA | low | > 85 |
| Escherichia coli ECOR38 | 0.10 | HEPCGN_03255 | plaP | putrescine/proton symporter PlaP | 0.44 | HEPCGN_06815 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | low | > 87 |
| Escherichia fergusonii Becca | 0.10 | EFB2_01842 | | Low-affinity putrescine importer PlaP | 0.44 | EFB2_03595 | | Multidrug efflux pump subunit AcrA | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.10 | GFF3916 | | Putrescine importer | 0.42 | GFF2117 | | RND efflux system, membrane fusion protein CmeA | low | > 78 |
| Variovorax sp. OAS795 | 0.10 | ABID97_RS19505 | | ethanolamine permease | 0.47 | ABID97_RS00320 | | efflux RND transporter periplasmic adaptor subunit | low | > 91 |
| Azospirillum sp. SherDot2 | 0.10 | MPMX19_05701 | | Putrescine transporter PotE | 0.42 | MPMX19_05883 | | Multidrug resistance protein MexA | low | > 112 |
| Rhodospirillum rubrum S1H | 0.10 | Rru_A1030 | | Amino acid permease-associated region (NCBI) | 0.37 | Rru_A2050 | | Secretion protein HlyD (NCBI) | low | > 58 |
| Agrobacterium fabrum C58 | 0.09 | Atu2143 | | ABC transporter, membrane spanning protein (amino acid) | 0.34 | Atu3203 | | RND multidrug efflux membrane permease | low | > 89 |
| Pseudomonas sp. S08-1 | 0.09 | OH686_03555 | | Lysine/cadaverine antiporter membrane protein CadB | 0.39 | OH686_16045 | | Multidrug efflux system, membrane fusion component | low | > 80 |
| Sinorhizobium meliloti 1021 | 0.08 | SMc02616 | | permease transmembrane protein | 0.37 | SMc02868 | | multidrug efflux system protein | low | > 103 |
| Marinobacter adhaerens HP15 | 0.08 | HP15_180 | | amino acid transporter | 0.18 | HP15_932 | | efflux transporter, RND family, MFP subunit | low | > 73 |
Not shown: 6 genomes with orthologs for ABZR87_RS13545 only; 20 genomes with orthologs for ABZR87_RS05310 only