| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Brevundimonas sp. GW460-12-10-14-LB2 | 1.0 | A4249_RS03600 | | LacI family DNA-binding transcriptional regulator | 1.0 | A4249_RS05505 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.57 | 8 |
| Lysobacter sp. OAE881 | 0.42 | ABIE51_RS08800 | | LacI family DNA-binding transcriptional regulator | 0.31 | ABIE51_RS17265 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.42 | OKGIIK_15435 | | LacI family transcriptional regulator | 0.31 | OKGIIK_12100 | spoT | guanosine-3',5'-bis(diphosphate) 3'-diphosphatase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.42 | ABZR86_RS14885 | | LacI family DNA-binding transcriptional regulator | 0.31 | ABZR86_RS11850 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.41 | LRK54_RS08670 | | LacI family transcriptional regulator | 0.30 | LRK54_RS11795 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Rhodanobacter denitrificans MT42 | 0.41 | LRK55_RS08435 | | LacI family DNA-binding transcriptional regulator | 0.31 | LRK55_RS11520 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.2362.1 | | Transcriptional regulator, LacI family | 0.30 | Xcc-8004.1215.1 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.38 | Ga0059261_2309 | | transcriptional regulator, LacI family | 0.46 | Ga0059261_1293 | | (p)ppGpp synthetase, RelA/SpoT family | 0.71 | 1 |
| Pectobacterium carotovorum WPP14 | 0.26 | HER17_RS03725 | | LacI family DNA-binding transcriptional regulator | 0.34 | HER17_RS21385 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | low | > 75 |
| Escherichia coli ECOR38 | 0.25 | HEPCGN_22795 | galS | HTH-type transcriptional regulator GalS | 0.33 | HEPCGN_14375 | spoT | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | low | > 87 |
| Shewanella amazonensis SB2B | 0.25 | Sama_1400 | | periplasmic binding protein/LacI transcriptional regulator (RefSeq) | 0.35 | Sama_0264 | | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) | low | > 62 |
| Escherichia coli BW25113 | 0.25 | b2151 | galS | DNA-binding transcriptional repressor (NCBI) | 0.34 | b3650 | spoT | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.25 | OHPLBJKB_01560 | | HTH-type transcriptional regulator GalS | 0.34 | OHPLBJKB_00051 | | Bifunctional (p)ppGpp synthase/hydrolase SpoT | low | > 73 |
| Escherichia coli ECOR27 | 0.25 | NOLOHH_15100 | galS | HTH-type transcriptional regulator GalS | 0.33 | NOLOHH_07435 | spoT | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | low | > 75 |
| Escherichia coli BL21 | 0.25 | ECD_02080 | | galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor | 0.33 | ECD_03507 | | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | low | > 61 |
| Dickeya dadantii 3937 | 0.25 | DDA3937_RS00055 | | ribose operon transcriptional repressor RbsR | 0.33 | DDA3937_RS00180 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | — | — |
| Escherichia coli Nissle 1917 | 0.25 | ECOLIN_RS12585 | | HTH-type transcriptional regulator GalS | 0.33 | ECOLIN_RS20790 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | low | > 55 |
| Escherichia fergusonii Becca | 0.25 | EFB2_01705 | | HTH-type transcriptional regulator GalS | 0.33 | EFB2_00138 | | Bifunctional (p)ppGpp synthase/hydrolase SpoT | low | > 86 |
| Escherichia coli ECRC101 | 0.25 | MCAODC_14575 | galS | HTH-type transcriptional regulator GalS | 0.33 | MCAODC_06065 | spoT | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | low | > 87 |
| Escherichia coli ECRC100 | 0.25 | OKFHMN_23525 | galS | HTH-type transcriptional regulator GalS | 0.33 | OKFHMN_15555 | spoT | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | low | > 80 |
| Escherichia coli ECRC98 | 0.25 | JDDGAC_27485 | galS | HTH-type transcriptional regulator GalS | 0.33 | JDDGAC_19180 | spoT | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | low | > 86 |
| Escherichia coli ECRC99 | 0.25 | KEDOAH_04660 | galS | HTH-type transcriptional regulator GalS | 0.33 | KEDOAH_12590 | spoT | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | — | — |
| Escherichia coli ECRC102 | 0.25 | NIAGMN_21290 | galS | HTH-type transcriptional regulator GalS | 0.33 | NIAGMN_13315 | spoT | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | — | — |
| Dickeya dianthicola 67-19 | 0.25 | HGI48_RS21310 | | ribose operon transcriptional repressor RbsR | 0.33 | HGI48_RS21180 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | — | — |
| Rahnella sp. WP5 | 0.25 | EX31_RS14230 | | DNA-binding transcriptional regulator CytR | 0.35 | EX31_RS15810 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | low | > 89 |
| Escherichia coli ECRC62 | 0.25 | BNILDI_14020 | galS | HTH-type transcriptional regulator GalS | 0.33 | BNILDI_04080 | spoT | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | low | > 75 |
| Dickeya dianthicola ME23 | 0.25 | DZA65_RS18545 | | LacI family transcriptional regulator | 0.33 | DZA65_RS22150 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.24 | Echvi_3495 | | Transcriptional regulators | 0.25 | Echvi_4631 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 79 |
| Pseudomonas fluorescens FW300-N2E3 | 0.24 | AO353_20830 | | LacI family transcriptional regulator | 0.32 | AO353_09280 | | (p)ppGpp synthetase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.24 | Pf6N2E2_164 | | Ribose operon repressor | 0.32 | Pf6N2E2_4361 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.24 | CCNA_01699 | | LacI-family transcriptional regulator | 0.71 | CCNA_01622 | | Rsh ppGpp hydrolase-synthetase | low | > 67 |
| Enterobacter asburiae PDN3 | 0.24 | EX28DRAFT_0406 | | Transcriptional regulators | 0.34 | EX28DRAFT_3899 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 76 |
| Klebsiella michiganensis M5al | 0.24 | BWI76_RS23355 | | LacI family transcriptional regulator | 0.34 | BWI76_RS27430 | | (p)ppGpp synthetase | low | > 92 |
| Caulobacter crescentus NA1000 | 0.24 | CCNA_01699 | | LacI-family transcriptional regulator | 0.71 | CCNA_01622 | | Rsh ppGpp hydrolase-synthetase | low | > 66 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.24 | GFF3787 | | Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator | 0.34 | GFF357 | | 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 | low | > 78 |
| Pseudomonas fluorescens FW300-N2C3 | 0.24 | AO356_00955 | | LacI family transcriptional regulator | 0.32 | AO356_12480 | | (p)ppGpp synthetase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.24 | CSW01_13525 | | DNA-binding transcriptional regulator CytR | 0.34 | CSW01_13675 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase | low | > 62 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.24 | Psyr_2154 | | transcriptional regulator, LacI family | 0.32 | Psyr_0209 | | RelA/SpoT protein | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.24 | GFF4454 | | Transcriptional regulator, LacI family | 0.31 | GFF1034 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.24 | Psyr_2154 | | transcriptional regulator, LacI family | 0.32 | Psyr_0209 | | RelA/SpoT protein | — | — |
| Pseudomonas sp. RS175 | 0.23 | PFR28_02734 | | Ribose operon repressor | 0.32 | PFR28_04424 | | Bifunctional (p)ppGpp synthase/hydrolase SpoT | — | — |
| Erwinia tracheiphila SCR3 | 0.23 | LU632_RS08515 | galS | HTH-type transcriptional regulator GalS | 0.33 | LU632_RS22200 | spoT | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | low | > 74 |
| Ralstonia solanacearum UW163 | 0.23 | UW163_RS11705 | | LacI family transcriptional regulator | 0.34 | UW163_RS10410 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.23 | RALBFv3_RS14240 | | LacI family transcriptional regulator | 0.34 | RALBFv3_RS03315 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 76 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.23 | CA264_13975 | | LacI family transcriptional regulator | 0.26 | CA264_01425 | | RelA/SpoT family protein | low | > 74 |
| Enterobacter sp. TBS_079 | 0.23 | MPMX20_03121 | | HTH-type transcriptional regulator GalS | 0.34 | MPMX20_00086 | | Bifunctional (p)ppGpp synthase/hydrolase SpoT | low | > 85 |
| Pseudomonas fluorescens FW300-N1B4 | 0.23 | Pf1N1B4_6032 | | Ribose operon repressor | 0.32 | Pf1N1B4_2113 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | — | — |
| Ralstonia solanacearum GMI1000 | 0.23 | RS_RS05020 | | LacI family transcriptional regulator | 0.34 | RS_RS10800 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Ralstonia solanacearum PSI07 | 0.23 | RPSI07_RS19225 | | LacI family transcriptional regulator | 0.34 | RPSI07_RS13870 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 81 |
| Alteromonas macleodii MIT1002 | 0.23 | MIT1002_04103 | | Galactose operon repressor | 0.35 | MIT1002_00108 | | Bifunctional (p)ppGpp synthase/hydrolase SpoT | low | > 70 |
| Pantoea sp. MT58 | 0.23 | IAI47_10795 | | HTH-type transcriptional repressor PurR | 0.34 | IAI47_00510 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.23 | ABZR87_RS09955 | | LacI family DNA-binding transcriptional regulator | 0.34 | ABZR87_RS15225 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 80 |
| Pseudomonas fluorescens SBW25-INTG | 0.22 | PFLU_RS20365 | | LacI family DNA-binding transcriptional regulator | 0.32 | PFLU_RS29510 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | — | — |
| Pseudomonas fluorescens SBW25 | 0.22 | PFLU_RS20365 | | LacI family DNA-binding transcriptional regulator | 0.32 | PFLU_RS29510 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | — | — |
| Sinorhizobium meliloti 1021 | 0.22 | SM_b20014 | | transcriptional regulator | 0.42 | SMc02659 | | GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.22 | HSERO_RS11495 | | LacI family transcription regulator | 0.33 | HSERO_RS10635 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.22 | PfGW456L13_3909 | | Ribose operon repressor | 0.32 | PfGW456L13_780 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.22 | QEN71_RS07355 | | LacI family DNA-binding transcriptional regulator | 0.33 | QEN71_RS03665 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 153 |
| Agrobacterium fabrum C58 | 0.22 | Atu5078 | | LacI family transcription regulator | 0.43 | Atu1030 | | GTP pyrophosphohydrolase/synthetase, RelA/SpoT family | low | > 89 |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_03117 | | Catabolite control protein A | 0.49 | MPMX19_00838 | | GTP pyrophosphokinase rsh | low | > 112 |
| Variovorax sp. OAS795 | 0.22 | ABID97_RS24770 | | LacI family DNA-binding transcriptional regulator | 0.31 | ABID97_RS23670 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.22 | ABZR88_RS10530 | | LacI family DNA-binding transcriptional regulator | 0.29 | ABZR88_RS15610 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 71 |
| Variovorax sp. SCN45 | 0.21 | GFF2137 | | Ribose operon repressor | 0.31 | GFF2375 | | Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.21 | CA265_RS06750 | | LacI family transcriptional regulator | 0.29 | CA265_RS14485 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 88 |
| Pseudomonas putida KT2440 | 0.21 | PP_2457 | | DNA-binding transcriptional repressor | 0.32 | PP_5302 | | bifunctional (p)ppGpp synthase/hydrolase | — | — |
| Paraburkholderia graminis OAS925 | 0.21 | ABIE53_002322 | | LacI family transcriptional regulator | 0.33 | ABIE53_003230 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 113 |
| Phaeobacter inhibens DSM 17395 | 0.21 | PGA1_c07800 | | putative transcriptional regulator, lacI family | 0.41 | PGA1_c01010 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase SpoT | low | > 62 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.21 | H281DRAFT_05228 | | transcriptional regulator, LacI family | 0.33 | H281DRAFT_04004 | | (p)ppGpp synthetase I, SpoT/RelA | low | > 103 |
| Bifidobacterium breve UCC2003 | 0.20 | BBR_RS13080 | | LacI family DNA-binding transcriptional regulator | 0.29 | BBR_RS16410 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.19 | RR42_RS27820 | | GntR family transcriptional regulator | 0.35 | RR42_RS04920 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Rhizobium sp. OAE497 | 0.19 | ABIE40_RS16795 | | LacI family DNA-binding transcriptional regulator | 0.42 | ABIE40_RS06050 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 107 |
| Dinoroseobacter shibae DFL-12 | 0.18 | Dshi_2238 | | transcriptional regulator, LacI family (RefSeq) | 0.42 | Dshi_0194 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | low | > 64 |
| Bacteroides stercoris CC31F | 0.18 | HMPREF1181_RS05535 | | LacI family DNA-binding transcriptional regulator | 0.24 | HMPREF1181_RS09205 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Bacteroides ovatus ATCC 8483 | 0.18 | BACOVA_02049 | | sugar-binding domain protein | 0.24 | BACOVA_04817 | | RelA/SpoT family protein | — | — |
| Rhodospirillum rubrum S1H | 0.18 | Rru_A1973 | | Transcriptional Regulator, LacI family (NCBI) | 0.51 | Rru_A1856 | | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA (NCBI) | — | — |
| Azospirillum brasilense Sp245 | 0.17 | AZOBR_RS32320 | | LacI family transcriptional regulator | 0.51 | AZOBR_RS22045 | | GTP pyrophosphokinase | 0.35 | 49 |
| Pseudomonas stutzeri RCH2 | 0.16 | Psest_2126 | | Transcriptional regulators | 0.31 | Psest_3817 | | (p)ppGpp synthetase, RelA/SpoT family | — | — |
Not shown: 0 genomes with orthologs for A4249_RS03600 only; 25 genomes with orthologs for A4249_RS05505 only