Conservation of cofitness between DvMF_0353 and DvMF_0391 in Desulfovibrio vulgaris Miyazaki F

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Desulfovibrio vulgaris Miyazaki F 1.0 DvMF_0353 diaminopimelate decarboxylase (RefSeq) 1.0 DvMF_0391 Carbonate dehydratase (RefSeq) 0.66 3
Desulfovibrio vulgaris Hildenborough JW710 0.75 DVU1647 lysA-1 diaminopimelate decarboxylase (TIGR) 0.58 DVU1777 cynT carbonic anhydrase (TIGR) low > 55
Marinobacter adhaerens HP15 0.56 HP15_247 diaminopimelate decarboxylase 0.16 HP15_2268 carbonate dehydratase — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.33 Pf1N1B4_1849 Carbonic anhydrase (EC 4.2.1.1) — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.34 PfGW456L13_619 Carbonic anhydrase (EC 4.2.1.1) low > 87
Shewanella sp. ANA-3 0.54 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.19 Shewana3_1909 carbonic anhydrase (RefSeq) low > 73
Shewanella loihica PV-4 0.54 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.20 Shew_1859 carbonate dehydratase (RefSeq) low > 60
Pseudomonas putida KT2440 0.54 PP_5227 diaminopimelate decarboxylase 0.35 PP_0100 carbonic anhydrase — —
Alteromonas macleodii MIT1002 0.54 MIT1002_00160 Diaminopimelate decarboxylase 0.30 MIT1002_01121 Carbonic anhydrase 1 low > 70
Shewanella oneidensis MR-1 0.54 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.19 SO2474 carbonic anhydrase family protein (NCBI ptt file) low > 76
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_0182 diaminopimelate decarboxylase 0.35 Psyr_0288 Carbonate dehydratase — —
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_0182 diaminopimelate decarboxylase 0.35 Psyr_0288 Carbonate dehydratase — —
Pseudomonas stutzeri RCH2 0.53 Psest_3764 diaminopimelate decarboxylase 0.33 Psest_4080 Carbonic anhydrase — —
Pseudomonas sp. RS175 0.53 PFR28_04375 Diaminopimelate decarboxylase 0.33 PFR28_04694 Carbonic anhydrase 1 — —
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_12740 diaminopimelate decarboxylase 0.33 AO356_11145 carbonate dehydratase — —
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.33 Pf6N2E2_4095 Carbonic anhydrase (EC 4.2.1.1) — —
Pseudomonas sp. S08-1 0.53 OH686_13800 diaminopimelate decarboxylase 0.32 OH686_12340 Carbonic anhydrase, beta class — —
Shewanella amazonensis SB2B 0.52 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.19 Sama_1642 carbonate dehydratase (RefSeq) low > 62
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_09035 diaminopimelate decarboxylase 0.33 AO353_10815 carbonate dehydratase — —
Pseudomonas simiae WCS417 0.52 PS417_27580 diaminopimelate decarboxylase 0.34 PS417_00285 carbonate dehydratase — —
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS29265 diaminopimelate decarboxylase 0.34 PFLU_RS00275 carbonic anhydrase — —
Pseudomonas fluorescens SBW25 0.52 PFLU_RS29265 diaminopimelate decarboxylase 0.34 PFLU_RS00275 carbonic anhydrase low > 109
Dechlorosoma suillum PS 0.52 Dsui_1182 diaminopimelate decarboxylase 0.30 Dsui_3273 carbonic anhydrase — —
Ralstonia solanacearum IBSBF1503 0.51 RALBFv3_RS06990 diaminopimelate decarboxylase 0.20 RALBFv3_RS22860 carbonic anhydrase — —
Ralstonia solanacearum UW163 0.51 UW163_RS06625 diaminopimelate decarboxylase 0.20 UW163_RS23480 carbonic anhydrase — —
Castellaniella sp019104865 MT123 0.51 ABCV34_RS12685 diaminopimelate decarboxylase 0.33 ABCV34_RS14715 carbonic anhydrase — —
Ralstonia solanacearum GMI1000 0.51 RS_RS14930 diaminopimelate decarboxylase 0.20 RS_RS17690 carbonic anhydrase — —
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS02640 diaminopimelate decarboxylase 0.30 ABZR87_RS21010 carbonic anhydrase low > 80
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS00950 diaminopimelate decarboxylase 0.33 HSERO_RS16790 carbonic anhydrase — —
Phaeobacter inhibens DSM 17395 0.50 PGA1_c03470 diaminopimelate decarboxylase LysA 0.30 PGA1_c31510 carbonic anhydrase CynT — —
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS28080 diaminopimelate decarboxylase 0.31 QEN71_RS37755 carbonic anhydrase low > 153
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS19050 diaminopimelate decarboxylase 0.18 RR42_RS00880 carbonate dehydratase — —
Rhodopseudomonas palustris CGA009 0.49 TX73_024635 diaminopimelate decarboxylase 0.36 TX73_001200 carbonic anhydrase — —
Paraburkholderia graminis OAS925 0.49 ABIE53_003749 diaminopimelate decarboxylase 0.29 ABIE53_005939 carbonic anhydrase low > 113
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS17930 diaminopimelate decarboxylase 0.31 BPHYT_RS10640 carbonic anhydrase — —
Dinoroseobacter shibae DFL-12 0.48 Dshi_3059 diaminopimelate decarboxylase (RefSeq) 0.33 Dshi_3236 Carbonate dehydratase (RefSeq) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.33 GFF5831 Carbonic anhydrase (EC 4.2.1.1) — —
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_05606 diaminopimelate decarboxylase 0.32 H281DRAFT_00336 carbonic anhydrase — —
Agrobacterium fabrum C58 0.48 Atu3601 diaminopimelate decarboxylase 0.34 Atu2488 carbonate dehydratase — —
Azospirillum brasilense Sp245 0.47 AZOBR_RS16945 diaminopimelate decarboxylase 0.43 AZOBR_RS06185 carbonic anhydrase — —
Sinorhizobium meliloti 1021 0.47 SMc00723 diaminopimelate DAP decarboxylase 0.38 SMc04083 carbonic anhydrase — —
Rhizobium sp. OAE497 0.46 ABIE40_RS17530 diaminopimelate decarboxylase 0.37 ABIE40_RS19110 carbonic anhydrase — —
Azospirillum sp. SherDot2 0.46 MPMX19_05819 Diaminopimelate decarboxylase 0.43 MPMX19_01409 Carbonic anhydrase 1 — —
Magnetospirillum magneticum AMB-1 0.46 AMB_RS22725 diaminopimelate decarboxylase 0.19 AMB_RS21440 carbonate dehydratase — —
Rhodospirillum rubrum S1H 0.43 Rru_A0396 Diaminopimelate decarboxylase (NCBI) 0.19 Rru_A2056 Carbonate dehydratase (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS12545 diaminopimelate decarboxylase 0.38 A4249_RS01665 carbonic anhydrase — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS11485 diaminopimelate decarboxylase 0.21 LRK54_RS02580 carbonate dehydratase — —
Rhodanobacter denitrificans MT42 0.40 LRK55_RS11215 diaminopimelate decarboxylase 0.21 LRK55_RS02335 carbonate dehydratase — —
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_12375 lysA diaminopimelate decarboxylase 0.20 OKGIIK_09635 can carbonate dehydratase — —
Bosea sp. OAE506 0.39 ABIE41_RS08740 diaminopimelate decarboxylase 0.37 ABIE41_RS06110 carbonic anhydrase — —
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS12130 diaminopimelate decarboxylase 0.33 ABZR86_RS08200 carbonic anhydrase low > 74
Lysobacter sp. OAE881 0.39 ABIE51_RS13675 diaminopimelate decarboxylase 0.22 ABIE51_RS12660 carbonate dehydratase — —
Sphingomonas koreensis DSMZ 15582 0.38 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.37 Ga0059261_0149 Carbonic anhydrase — —

Not shown: 21 genomes with orthologs for DvMF_0353 only; 27 genomes with orthologs for DvMF_0391 only