| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Shewanella sp. ANA-3 | 1.0 | Shewana3_3777 | | RNAse PH (RefSeq) | 1.0 | Shewana3_0808 | | cysteine desulfurase (RefSeq) | 0.64 | 2 |
| Shewanella oneidensis MR-1 | 1.00 | SO4256 | rph | ribonuclease PH (NCBI ptt file) | 0.89 | SO3789 | | aminotransferase, class V (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.94 | Shew_3488 | | ribonuclease PH (RefSeq) | 0.72 | Shew_0735 | | SufS subfamily cysteine desulfurase (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.92 | Sama_0320 | | tRNA nucleotidyltransferase (RefSeq) | 0.63 | Sama_2777 | | aminotransferase, class V (RefSeq) | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.78 | MIT1002_04071 | | Ribonuclease PH | 0.46 | MIT1002_02797 | | putative cysteine desulfurase | — | — |
| Dickeya dianthicola 67-19 | 0.75 | HGI48_RS00675 | | ribonuclease PH | 0.44 | HGI48_RS12825 | | cysteine desulfurase SufS | low | > 71 |
| Dickeya dianthicola ME23 | 0.75 | DZA65_RS00730 | | ribonuclease PH | 0.44 | DZA65_RS13290 | | cysteine desulfurase SufS | low | > 75 |
| Dickeya dadantii 3937 | 0.74 | DDA3937_RS20540 | | ribonuclease PH | 0.44 | DDA3937_RS12760 | | cysteine desulfurase SufS | low | > 74 |
| Pantoea sp. MT58 | 0.73 | IAI47_00595 | | ribonuclease PH | 0.44 | IAI47_10860 | | cysteine desulfurase SufS | — | — |
| Klebsiella michiganensis M5al | 0.73 | BWI76_RS27390 | | ribonuclease PH | 0.42 | BWI76_RS16980 | | bifunctional cysteine desulfurase/selenocysteine lyase | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.73 | GFF366 | | Ribonuclease PH (EC 2.7.7.56) | 0.43 | GFF3562 | | Cysteine desulfurase (EC 2.8.1.7), SufS subfamily | low | > 78 |
| Enterobacter sp. TBS_079 | 0.73 | MPMX20_00092 | | Ribonuclease PH | 0.44 | MPMX20_01947 | | Cysteine desulfurase | low | > 85 |
| Enterobacter asburiae PDN3 | 0.72 | EX28DRAFT_3893 | | ribonuclease PH | 0.44 | EX28DRAFT_1683 | | cysteine desulfurases, SufSfamily | low | > 76 |
| Escherichia coli BL21 | 0.72 | ECD_03500 | | ribonuclease PH | 0.43 | ECD_01649 | | cysteine desulfurase, stimulated by SufE; selenocysteine lyase, PLP-dependent | low | > 60 |
| Escherichia coli ECRC62 | 0.72 | BNILDI_04045 | rph | ribonuclease PH | 0.43 | BNILDI_16580 | sufS | cysteine desulfurase SufS | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.72 | OHPLBJKB_00059 | | Ribonuclease PH | 0.43 | OHPLBJKB_02044 | | Cysteine desulfurase | low | > 73 |
| Escherichia coli ECOR38 | 0.72 | HEPCGN_14410 | rph | ribonuclease PH | 0.43 | HEPCGN_05655 | sufS | cysteine desulfurase SufS | low | > 85 |
| Escherichia coli ECOR27 | 0.72 | NOLOHH_07470 | rph | ribonuclease PH | 0.43 | NOLOHH_17790 | sufS | cysteine desulfurase SufS | — | — |
| Escherichia coli ECRC102 | 0.72 | NIAGMN_13350 | rph | ribonuclease PH | 0.43 | NIAGMN_00795 | sufS | cysteine desulfurase SufS | — | — |
| Escherichia coli Nissle 1917 | 0.72 | ECOLIN_RS20755 | | ribonuclease PH | 0.43 | ECOLIN_RS09395 | | cysteine desulfurase SufS | — | — |
| Escherichia fergusonii Becca | 0.72 | EFB2_00170 | | Ribonuclease PH | 0.43 | EFB2_02312 | | Cysteine desulfurase | low | > 86 |
| Escherichia coli ECRC101 | 0.72 | MCAODC_06100 | rph | ribonuclease PH | 0.43 | MCAODC_18140 | sufS | cysteine desulfurase SufS | — | — |
| Escherichia coli ECRC99 | 0.72 | KEDOAH_12555 | rph | ribonuclease PH | 0.43 | KEDOAH_00840 | sufS | cysteine desulfurase SufS | — | — |
| Escherichia coli ECRC101 | 0.72 | OKFHMN_15590 | rph | ribonuclease PH | 0.43 | OKFHMN_27270 | sufS | cysteine desulfurase SufS | — | — |
| Serratia liquefaciens MT49 | 0.72 | IAI46_24850 | | ribonuclease PH | 0.43 | IAI46_11165 | | cysteine desulfurase SufS | low | > 86 |
| Escherichia coli ECRC98 | 0.72 | JDDGAC_19215 | rph | ribonuclease PH | 0.43 | JDDGAC_01845 | sufS | cysteine desulfurase SufS | — | — |
| Pectobacterium carotovorum WPP14 | 0.72 | HER17_RS20855 | | ribonuclease PH | 0.44 | HER17_RS08940 | | cysteine desulfurase SufS | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.71 | LU632_RS22020 | rph | ribonuclease PH | 0.42 | LU632_RS11075 | sufS | cysteine desulfurase SufS | — | — |
| Rahnella sp. WP5 | 0.71 | EX31_RS14505 | | ribonuclease PH | 0.42 | EX31_RS13890 | | cysteine desulfurase SufS | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.71 | CSW01_01115 | | ribonuclease PH | 0.44 | CSW01_11740 | | cysteine desulfurase CsdA | low | > 62 |
| Escherichia coli BW25113 | 0.71 | b3643 | rph | ribonuclease PH (NCBI) | 0.43 | b1680 | sufS | selenocysteine lyase (NCBI) | low | > 76 |
| Marinobacter adhaerens HP15 | 0.67 | HP15_300 | | ribonuclease PH | 0.48 | HP15_2987 | | cysteine desulfurase, SufS subfamily | — | — |
| Pseudomonas stutzeri RCH2 | 0.67 | Psest_3813 | | ribonuclease PH | 0.40 | Psest_1464 | | Selenocysteine lyase | low | > 67 |
| Pseudomonas fluorescens FW300-N2E3 | 0.66 | AO353_09260 | | ribonuclease PH | 0.45 | AO353_24935 | | cysteine sulfinate desulfinase | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.66 | Pf1N1B4_2117 | | Ribonuclease PH (EC 2.7.7.56) | 0.39 | Pf1N1B4_3076 | | Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.66 | Pf6N2E2_4365 | | Ribonuclease PH (EC 2.7.7.56) | 0.39 | Pf6N2E2_3079 | | Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.66 | AO356_12500 | | ribonuclease PH | 0.38 | AO356_06075 | | cysteine sulfinate desulfinase | 0.26 | 78 |
| Pseudomonas sp. RS175 | 0.66 | PFR28_04420 | | Ribonuclease PH | 0.37 | PFR28_00389 | | Cysteine desulfurase SufS | low | > 88 |
| Pseudomonas putida KT2440 | 0.66 | PP_5294 | | Ribonuclease PH | 0.40 | PP_1529 | | Probable cysteine desulfurase | low | > 96 |
| Pseudomonas fluorescens GW456-L13 | 0.65 | PfGW456L13_784 | | Ribonuclease PH (EC 2.7.7.56) | 0.38 | PfGW456L13_4717 | | Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.65 | PFLU_RS29490 | | ribonuclease PH | 0.39 | PFLU_RS06240 | | cysteine desulfurase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.65 | PS417_27810 | | ribonuclease PH | 0.39 | PS417_06175 | | cysteine sulfinate desulfinase | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.65 | PFLU_RS29490 | | ribonuclease PH | 0.39 | PFLU_RS06240 | | cysteine desulfurase | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.65 | Psyr_0213 | | RNAse PH | 0.39 | Psyr_1335 | | Aminotransferase, class V | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.65 | Psyr_0213 | | RNAse PH | 0.39 | Psyr_1335 | | Aminotransferase, class V | low | > 86 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.65 | Xcc-8004.1221.1 | | Ribonuclease PH (EC 2.7.7.56) | 0.42 | Xcc-8004.1697.1 | | Cysteine desulfurase (EC 2.8.1.7), SufS subfamily | — | — |
| Lysobacter sp. OAE881 | 0.63 | ABIE51_RS17285 | | ribonuclease PH | 0.43 | ABIE51_RS15745 | | cysteine desulfurase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.62 | ABZR86_RS11900 | | ribonuclease PH | 0.43 | ABZR86_RS09460 | | cysteine desulfurase | — | — |
| Rhizobium sp. OAE497 | 0.61 | ABIE40_RS01640 | | ribonuclease PH | 0.41 | ABIE40_RS09990 | | cysteine desulfurase | — | — |
| Sinorhizobium meliloti 1021 | 0.61 | SMc01144 | | ribonuclease PH | 0.41 | SMc00533 | | pyridoxal-phosphate-dependent aminotransferase | — | — |
| Azospirillum brasilense Sp245 | 0.61 | AZOBR_RS02205 | | ribonuclease PH | 0.41 | AZOBR_RS14845 | | cysteine desulfurase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.60 | RR42_RS04890 | | ribonuclease PH | 0.19 | RR42_RS21580 | | cysteine desulfurase | low | > 128 |
| Agrobacterium fabrum C58 | 0.60 | Atu0327 | | ribonuclease PH | 0.43 | Atu1821 | | cysteine desulfurase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.59 | TX73_001710 | | ribonuclease PH | 0.42 | TX73_012755 | | cysteine desulfurase | — | — |
| Bosea sp. OAE506 | 0.58 | ABIE41_RS03295 | | ribonuclease PH | 0.39 | ABIE41_RS16975 | | cysteine desulfurase | — | — |
| Azospirillum sp. SherDot2 | 0.58 | MPMX19_02576 | | Ribonuclease PH | 0.42 | MPMX19_04833 | | Cysteine desulfurase | — | — |
| Castellaniella sp019104865 MT123 | 0.58 | ABCV34_RS03515 | | ribonuclease PH | 0.42 | ABCV34_RS04680 | | cysteine desulfurase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.57 | LRK54_RS11745 | | ribonuclease PH | 0.43 | LRK54_RS03080 | | cysteine desulfurase | — | — |
| Rhodanobacter denitrificans MT42 | 0.57 | LRK55_RS11470 | | ribonuclease PH | 0.43 | LRK55_RS02830 | | cysteine desulfurase | — | — |
| Rhodospirillum rubrum S1H | 0.56 | Rru_A3641 | | Ribonuclease PH (NCBI) | 0.42 | Rru_A2570 | | Cysteine desulphurases, SufS (NCBI) | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.56 | A4249_RS13125 | | ribonuclease PH | 0.41 | A4249_RS04590 | | cysteine desulfurase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.56 | OKGIIK_12150 | rph | ribonuclease PH | 0.43 | OKGIIK_09950 | sufS,csdA | cysteine desulfurase CsdA | — | — |
| Dinoroseobacter shibae DFL-12 | 0.56 | Dshi_3463 | | ribonuclease PH (RefSeq) | 0.37 | Dshi_1623 | | cysteine desulfurase, SufS subfamily (RefSeq) | — | — |
| Mycobacterium tuberculosis H37Rv | 0.56 | Rv1340 | | Probable ribonuclease RphA (RNase PH) (tRNA nucleotidyltransferase) | 0.38 | Rv1464 | | Probable cysteine desulfurase Csd | — | — |
| Bifidobacterium breve UCC2003 | 0.56 | BBR_RS12405 | | ribonuclease PH | 0.32 | BBR_RS15120 | | aminotransferase class V-fold PLP-dependent enzyme | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.55 | CCNA_00151 | | ribonuclease PH | 0.42 | CCNA_01936 | | cysteine desulfurase/selenocysteine lyase | — | — |
| Caulobacter crescentus NA1000 | 0.55 | CCNA_00151 | | ribonuclease PH | 0.42 | CCNA_01936 | | cysteine desulfurase/selenocysteine lyase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.54 | PGA1_c35030 | | ribonuclease PH | 0.38 | PGA1_c15430 | | cysteine desulfurase SufS | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.50 | Ga0059261_2741 | | ribonuclease PH | 0.39 | Ga0059261_1475 | | cysteine desulfurases, SufSfamily | — | — |
Not shown: 20 genomes with orthologs for Shewana3_3777 only; 8 genomes with orthologs for Shewana3_0808 only