Conservation of cofitness between b2290 and b1232 in Escherichia coli BW25113

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2290 yfbQ aspartate aminotransferase (NCBI) 1.0 b1232 purU formyltetrahydrofolate deformylase (NCBI) 0.74 1
Escherichia coli Nissle 1917 1.00 ECOLIN_RS13295 alanine transaminase AlaA 1.00 ECOLIN_RS07460 formyltetrahydrofolate deformylase low > 52
Escherichia fergusonii Becca 1.00 EFB2_01568 Glutamate-pyruvate aminotransferase AlaA 1.00 EFB2_02694 Formyltetrahydrofolate deformylase low > 86
Escherichia coli ECRC62 1.00 BNILDI_13365 alaA alanine transaminase AlaA 0.99 BNILDI_18635 purU formyltetrahydrofolate deformylase — —
Escherichia coli BL21 1.00 ECD_02215 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase 1.00 ECD_01208 formyltetrahydrofolate hydrolase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01415 Glutamate-pyruvate aminotransferase AlaA 1.00 OHPLBJKB_02453 Formyltetrahydrofolate deformylase low > 73
Escherichia coli ECOR27 1.00 NOLOHH_14445 alaA alanine transaminase AlaA 1.00 NOLOHH_20480 purU formyltetrahydrofolate deformylase low > 57
Escherichia coli ECOR38 1.00 HEPCGN_22030 alaA alanine transaminase AlaA 1.00 HEPCGN_25030 purU formyltetrahydrofolate deformylase low > 85
Escherichia coli ECRC98 1.00 JDDGAC_26790 alaA alanine transaminase AlaA 1.00 JDDGAC_06005 purU formyltetrahydrofolate deformylase — —
Escherichia coli ECRC99 1.00 KEDOAH_05370 alaA alanine transaminase AlaA 1.00 KEDOAH_25565 purU formyltetrahydrofolate deformylase — —
Escherichia coli ECRC102 1.00 NIAGMN_20595 alaA alanine transaminase AlaA 1.00 NIAGMN_27665 purU formyltetrahydrofolate deformylase — —
Escherichia coli ECRC101 1.00 OKFHMN_22825 alaA alanine transaminase AlaA 1.00 OKFHMN_28570 purU formyltetrahydrofolate deformylase — —
Escherichia coli ECRC101 1.00 MCAODC_13865 alaA alanine transaminase AlaA 1.00 MCAODC_21690 purU formyltetrahydrofolate deformylase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF1894 Aspartate aminotransferase (EC 2.6.1.1) 0.97 GFF2756 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 78
Klebsiella michiganensis M5al 0.97 BWI76_RS20205 aminotransferase AlaT 0.96 BWI76_RS17290 formyltetrahydrofolate deformylase 0.21 47
Enterobacter asburiae PDN3 0.97 EX28DRAFT_0319 Aspartate/tyrosine/aromatic aminotransferase 0.95 EX28DRAFT_0858 formyltetrahydrofolate deformylase low > 76
Enterobacter sp. TBS_079 0.96 MPMX20_03220 Glutamate-pyruvate aminotransferase AlaA 0.95 MPMX20_02596 Formyltetrahydrofolate deformylase low > 85
Pantoea sp. MT58 0.93 IAI47_06350 pyridoxal phosphate-dependent aminotransferase 0.90 IAI47_09010 formyltetrahydrofolate deformylase 0.45 18
Dickeya dadantii 3937 0.93 DDA3937_RS14345 pyridoxal phosphate-dependent aminotransferase 0.90 DDA3937_RS10325 formyltetrahydrofolate deformylase low > 74
Dickeya dianthicola ME23 0.93 DZA65_RS14995 pyridoxal phosphate-dependent aminotransferase 0.89 DZA65_RS10810 formyltetrahydrofolate deformylase low > 75
Dickeya dianthicola 67-19 0.92 HGI48_RS14320 pyridoxal phosphate-dependent aminotransferase 0.89 HGI48_RS10335 formyltetrahydrofolate deformylase low > 71
Pectobacterium carotovorum WPP14 0.91 HER17_RS07115 pyridoxal phosphate-dependent aminotransferase 0.90 HER17_RS11065 formyltetrahydrofolate deformylase 0.44 75
Erwinia tracheiphila SCR3 0.91 LU632_RS07955 pyridoxal phosphate-dependent aminotransferase 0.89 LU632_RS12940 purU formyltetrahydrofolate deformylase low > 74
Serratia liquefaciens MT49 0.91 IAI46_17720 pyridoxal phosphate-dependent aminotransferase 0.90 IAI46_14265 formyltetrahydrofolate deformylase low > 86
Rahnella sp. WP5 0.88 EX31_RS19445 pyridoxal phosphate-dependent aminotransferase 0.89 EX31_RS10115 formyltetrahydrofolate deformylase 0.61 35
Vibrio cholerae E7946 ATCC 55056 0.81 CSW01_09870 pyridoxal phosphate-dependent aminotransferase 0.73 CSW01_09940 formyltetrahydrofolate deformylase low > 62
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_2446 Aspartate aminotransferase (EC 2.6.1.1) 0.39 Pf6N2E2_5508 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 103
Pseudomonas putida KT2440 0.75 PP_1872 glutamate-pyruvate aminotransferase 0.38 PP_1367 formyltetrahydrofolate hydrolase low > 96
Pseudomonas sp. RS175 0.75 PFR28_00984 Glutamate-pyruvate aminotransferase AlaA 0.40 PFR28_03439 Formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_2252 Aspartate aminotransferase (EC 2.6.1.1) 0.39 PfGW456L13_1825 Formyltetrahydrofolate deformylase (EC 3.5.1.10) — —
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_19150 aminotransferase 0.40 AO353_03710 formyltetrahydrofolate deformylase low > 101
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_03090 aminotransferase 0.40 AO356_17895 formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_261 Aspartate aminotransferase (EC 2.6.1.1) 0.39 Pf1N1B4_665 Formyltetrahydrofolate deformylase (EC 3.5.1.10) — —
Pseudomonas sp. S08-1 0.74 OH686_22575 Alanine transaminase 0.38 OH686_18295 formyltetrahydrofolate deformylase low > 80
Pseudomonas stutzeri RCH2 0.74 Psest_1772 Aspartate/tyrosine/aromatic aminotransferase 0.39 Psest_3178 formyltetrahydrofolate deformylase 0.45 61
Pseudomonas simiae WCS417 0.74 PS417_08560 aminotransferase 0.40 PS417_22565 formyltetrahydrofolate deformylase low > 88
Pseudomonas fluorescens SBW25-INTG 0.74 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase 0.40 PFLU_RS24200 formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens SBW25 0.74 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase 0.40 PFLU_RS24200 formyltetrahydrofolate deformylase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_3615 Aminotransferase, class I and II 0.39 Psyr_4018 Formyltetrahydrofolate deformylase low > 86
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_3615 Aminotransferase, class I and II 0.39 Psyr_4018 Formyltetrahydrofolate deformylase 0.54 11
Shewanella oneidensis MR-1 0.73 SO2483 aspartate aminotransferase, putative (NCBI ptt file) 0.68 SO1624 purU formyltetrahydrofolate deformylase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.73 Shew_1914 aminotransferase AlaT (RefSeq) 0.65 Shew_2640 purU formyltetrahydrofolate deformylase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.73 Sama_1697 aminotransferase AlaT (RefSeq) 0.69 Sama_1134 purU formyltetrahydrofolate deformylase (RefSeq) low > 62
Shewanella sp. ANA-3 0.72 Shewana3_2145 aminotransferase AlaT (RefSeq) 0.70 Shewana3_2821 purU formyltetrahydrofolate deformylase (RefSeq) low > 73
Dechlorosoma suillum PS 0.68 Dsui_2908 aspartate/tyrosine/aromatic aminotransferase 0.41 Dsui_0762 formyltetrahydrofolate deformylase — —
Ralstonia solanacearum GMI1000 0.67 RS_RS06650 pyridoxal phosphate-dependent aminotransferase 0.36 RS_RS09460 formyltetrahydrofolate deformylase 0.55 24
Acinetobacter radioresistens SK82 0.67 MPMX26_01871 Glutamate-pyruvate aminotransferase AlaA 0.36 MPMX26_00378 Formyltetrahydrofolate deformylase low > 36
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS12545 aminotransferase 0.36 RR42_RS13800 formyltetrahydrofolate deformylase low > 128
Ralstonia sp. UNC404CL21Col 0.67 ABZR87_RS11440 pyridoxal phosphate-dependent aminotransferase 0.36 ABZR87_RS14235 formyltetrahydrofolate deformylase low > 80
Ralstonia solanacearum IBSBF1503 0.67 RALBFv3_RS15870 pyridoxal phosphate-dependent aminotransferase 0.37 RALBFv3_RS02305 formyltetrahydrofolate deformylase 0.80 9
Ralstonia solanacearum UW163 0.67 UW163_RS13315 pyridoxal phosphate-dependent aminotransferase 0.37 UW163_RS11420 formyltetrahydrofolate deformylase — —
Ralstonia solanacearum PSI07 0.66 RPSI07_RS17495 pyridoxal phosphate-dependent aminotransferase 0.36 RPSI07_RS15065 formyltetrahydrofolate deformylase 0.83 4
Acidovorax sp. GW101-3H11 0.66 Ac3H11_1508 Aspartate aminotransferase (EC 2.6.1.1) 0.37 Ac3H11_4485 Formyltetrahydrofolate deformylase (EC 3.5.1.10) — —
Alteromonas macleodii MIT1002 0.66 MIT1002_02306 Glutamate-pyruvate aminotransferase AlaA 0.36 MIT1002_00404 Formyltetrahydrofolate deformylase low > 70
Herbaspirillum seropedicae SmR1 0.66 HSERO_RS10455 aminotransferase 0.35 HSERO_RS07970 formyltetrahydrofolate deformylase low > 78
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS08950 aminotransferase 0.38 BPHYT_RS02955 formyltetrahydrofolate deformylase low > 109
Variovorax sp. OAS795 0.66 ABID97_RS10885 pyridoxal phosphate-dependent aminotransferase 0.36 ABID97_RS00100 formyltetrahydrofolate deformylase — —
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS22410 pyridoxal phosphate-dependent aminotransferase 0.39 QEN71_RS33925 formyltetrahydrofolate deformylase low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF3934 Aspartate aminotransferase (EC 2.6.1.1) 0.36 GFF2737 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 90
Paraburkholderia graminis OAS925 0.65 ABIE53_002025 alanine-synthesizing transaminase 0.38 ABIE53_000728 formyltetrahydrofolate deformylase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_00809 alanine-synthesizing transaminase 0.38 H281DRAFT_01917 formyltetrahydrofolate deformylase — —
Variovorax sp. SCN45 0.65 GFF2803 Alanine transaminase (EC 2.6.1.2) 0.37 GFF3790 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 127
Mycobacterium tuberculosis H37Rv 0.63 Rv0337c Probable aspartate aminotransferase AspC (transaminase A) (ASPAT) 0.33 Rv2964 Probable formyltetrahydrofolate deformylase PurU (formyl-FH(4) hydrolase) — —
Lysobacter sp. OAE881 0.43 ABIE51_RS18840 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.35 ABIE51_RS07700 formyltetrahydrofolate deformylase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.1010.1 Aspartate aminotransferase (EC 2.6.1.1) 0.38 Xcc-8004.395.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 74
Rhodopseudomonas palustris CGA009 0.19 TX73_022440 pyridoxal phosphate-dependent aminotransferase 0.34 TX73_020890 formyltetrahydrofolate deformylase — —
Azospirillum sp. SherDot2 0.19 MPMX19_02392 Aspartate/prephenate aminotransferase 0.38 MPMX19_04711 Formyltetrahydrofolate deformylase low > 112
Rhizobium sp. OAE497 0.18 ABIE40_RS12925 pyridoxal phosphate-dependent aminotransferase 0.36 ABIE40_RS00960 formyltetrahydrofolate deformylase low > 107
Caulobacter crescentus NA1000 0.18 CCNA_01603 aspartate aminotransferase 0.36 CCNA_03745 formyltetrahydrofolate deformylase low > 66
Azospirillum brasilense Sp245 0.18 AZOBR_RS12970 aspartate aminotransferase 0.37 AZOBR_RS21685 formyltetrahydrofolate deformylase — —
Caulobacter crescentus NA1000 Δfur 0.18 CCNA_01603 aspartate aminotransferase 0.36 CCNA_03745 formyltetrahydrofolate deformylase low > 67
Dinoroseobacter shibae DFL-12 0.17 Dshi_0762 aminotransferase class I and II (RefSeq) 0.35 Dshi_2111 formyltetrahydrofolate deformylase (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.17 Ga0059261_2226 Aspartate/tyrosine/aromatic aminotransferase 0.37 Ga0059261_1821 formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 68
Magnetospirillum magneticum AMB-1 0.17 AMB_RS02875 pyridoxal phosphate-dependent aminotransferase 0.38 AMB_RS18080 formyltetrahydrofolate deformylase — —

Not shown: 9 genomes with orthologs for b2290 only; 16 genomes with orthologs for b1232 only