Homologs of OHPLBJKB_03599 from Escherichia coli HS(pFamp)R (ATCC 700891)

RNA polymerase-associated protein RapA
SEED: RNA polymerase associated protein RapA (EC 3.6.1.-)
KEGG: ATP-dependent helicase HepA

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03599 RNA polymerase-associated protein RapA strong 100 100
o Escherichia coli BL21 ECD_00061 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase strong 100 100
o Escherichia coli ECOR27 NOLOHH_03145 rapA RNA polymerase-associated protein RapA strong 100 100
o Escherichia coli ECRC101 OKFHMN_10800 rapA RNA polymerase-associated protein RapA strong 100 100
o Escherichia coli ECRC101 MCAODC_01315 rapA RNA polymerase-associated protein RapA strong 100 100
o Escherichia coli ECRC102 NIAGMN_08650 rapA RNA polymerase-associated protein RapA sig. 100 100
o Escherichia coli ECRC62 BNILDI_08460 rapA RNA polymerase-associated protein RapA insig. 100 100
o Escherichia coli ECRC98 JDDGAC_14395 rapA RNA polymerase-associated protein RapA no data 100 100
o Escherichia coli ECRC99 KEDOAH_17355 rapA RNA polymerase-associated protein RapA no data 100 100
o Escherichia coli BW25113 b0059 hepA ATP-dependent helicase HepA (NCBI) strong 100 100
o Escherichia coli Nissle 1917 ECOLIN_RS00315 RNA polymerase-associated protein RapA strong 100 100
o Escherichia fergusonii Becca EFB2_03986 RNA polymerase-associated protein RapA insig. 100 100
o Escherichia coli ECOR38 HEPCGN_08790 rapA RNA polymerase-associated protein RapA cofit 100 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF183 RNA polymerase associated protein RapA (EC 3.6.1.-) cofit 93 100
o Klebsiella michiganensis M5al BWI76_RS04570 RNA polymerase-associated protein RapA strong 90 100
o Enterobacter sp. TBS_079 MPMX20_00753 RNA polymerase-associated protein RapA strong 90 100
o Enterobacter asburiae PDN3 EX28DRAFT_3651 Superfamily II DNA/RNA helicases, SNF2 family cofit 90 100
o Serratia liquefaciens MT49 IAI46_03275 RNA polymerase-associated protein RapA insig. 81 100
o Pantoea sp. MT58 IAI47_16055 RNA polymerase-associated protein RapA cofit 82 100
o Erwinia tracheiphila SCR3 LU632_RS02805 rapA RNA polymerase-associated protein RapA insig. 80 100
o Rahnella sp. WP5 EX31_RS03745 RNA polymerase-associated protein RapA cofit 78 100
o Dickeya dadantii 3937 DDA3937_RS18235 RNA polymerase-associated protein RapA sig. 77 100
o Dickeya dianthicola 67-19 HGI48_RS18170 RNA polymerase-associated protein RapA cofit 76 100
o Pectobacterium carotovorum WPP14 HER17_RS02990 RNA polymerase-associated protein RapA cofit 76 100
o Dickeya dianthicola ME23 DZA65_RS19310 RNA polymerase-associated protein RapA cofit 75 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_12705 RNA polymerase-associated protein RapA insig. 62 100
o Shewanella sp. ANA-3 Shewana3_0574 ATP-dependent helicase HepA (RefSeq) sig. 58 100
o Shewanella amazonensis SB2B Sama_3131 ATP-dependent helicase HepA (RefSeq) sig. 59 100
o Shewanella oneidensis MR-1 SO0575 hepA RNA polymerase-associated protein HepA (NCBI ptt file) sig. 58 100
o Shewanella loihica PV-4 Shew_0457 ATP-dependent helicase HepA (RefSeq) sig. 57 100
o Pseudomonas sp. RS175 PFR28_00612 RNA polymerase-associated protein RapA insig. 53 99
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4599 RNA polymerase associated protein RapA (EC 3.6.1.-) sig. 53 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3224 RNA polymerase associated protein RapA (EC 3.6.1.-) sig. 52 99
o Pseudomonas fluorescens SBW25 PFLU_RS06675 RNA polymerase-associated protein RapA cofit 52 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS06675 RNA polymerase-associated protein RapA sig. 52 99
o Pseudomonas fluorescens FW300-N2C3 AO356_04975 RNA polymerase-associated protein RapA sig. 52 99
o Pseudomonas syringae pv. syringae B728a Psyr_3842 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit sig. 52 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3842 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit sig. 52 99
o Pseudomonas putida KT2440 PP_1145 RNA polymerase-associated protein RapA sig. 52 99
o Pseudomonas fluorescens FW300-N2E3 AO353_17155 RNA polymerase-associated protein RapA sig. 52 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2845 RNA polymerase associated protein RapA (EC 3.6.1.-) strong 52 99
o Pseudomonas stutzeri RCH2 Psest_1327 Superfamily II DNA/RNA helicases, SNF2 family sig. 52 99
o Pseudomonas sp. S08-1 OH686_19955 RNA polymerase associated protein RapA insig. 51 100
o Pseudomonas simiae WCS417 PS417_06645 RNA polymerase-associated protein RapA strong 52 99
o Alteromonas macleodii MIT1002 MIT1002_00659 RNA polymerase-associated protein RapA cofit 46 99
o Marinobacter adhaerens HP15 HP15_3376 RNA polymerase-associated protein RapA strong 43 100
o Acinetobacter radioresistens SK82 MPMX26_01027 RNA polymerase-associated protein RapA strong 43 100
o Rhodanobacter sp. FW510-T8 OKGIIK_09865 rapA RNA polymerase-associated protein RapA cofit 41 99
o Rhodanobacter denitrificans MT42 LRK55_RS02635 RNA polymerase-associated protein RapA strong 42 99
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02885 RNA polymerase-associated protein RapA strong 42 99
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS09245 RNA polymerase-associated protein RapA sig. 42 99
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_6015 RNA polymerase associated protein RapA (EC 3.6.1.-) insig. 27 54
  Escherichia coli ECRC101 OKFHMN_11670 hepA helicase sig. 24 47
  Escherichia coli ECRC101 MCAODC_02185 hepA helicase strong 24 47
  Escherichia coli ECRC102 NIAGMN_09520 hepA helicase sig. 24 47
  Escherichia coli ECRC62 BNILDI_09545 hepA helicase sig. 24 47
  Escherichia coli ECRC98 JDDGAC_15270 hepA helicase no data 24 47
  Escherichia coli ECRC99 KEDOAH_16475 hepA helicase no data 24 47
  Kangiella aquimarina DSM 16071 B158DRAFT_1267 Superfamily II DNA/RNA helicases, SNF2 family insig. 38 20
  Pseudomonas sp. S08-1 OH686_23015 hypothetical protein insig. 36 19
  Sinorhizobium meliloti 1021 SMc02152 helicase insig. 32 20
  Rhodopseudomonas palustris CGA009 TX73_011450 helicase-related protein insig. 31 21
  Enterobacter sp. TBS_079 MPMX20_00569 RNA polymerase-associated protein RapA insig. 36 17
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.688.1 helicase (Snf2/Rad54 family) no data 40 18
  Azospirillum brasilense Sp245 AZOBR_RS30290 RNA helicase insig. 33 19
  Paraburkholderia sabiae LMG 24235 QEN71_RS00695 DEAD/DEAH box helicase cofit 34 19
  Paraburkholderia graminis OAS925 ABIE53_003106 superfamily II DNA or RNA helicase insig. 35 17
  Castellaniella sp019104865 MT123 ABCV34_RS02050 helicase-related protein cofit 31 17
  Pseudomonas sp. S08-1 OH686_23015 hypothetical protein insig. 36 11
  Bosea sp. OAE506 ABIE41_RS19075 DISARM system SNF2-like helicase DrmD insig. 31 17
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0444 Superfamily II DNA/RNA helicases, SNF2 family insig. 21 45
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.688.1 helicase (Snf2/Rad54 family) no data 52 5
  Azospirillum brasilense Sp245 AZOBR_RS30290 RNA helicase insig. 40 10
  Kangiella aquimarina DSM 16071 B158DRAFT_1267 Superfamily II DNA/RNA helicases, SNF2 family insig. 39 7
  Enterobacter sp. TBS_079 MPMX20_00569 RNA polymerase-associated protein RapA insig. 28 12
  Sinorhizobium meliloti 1021 SMc02152 helicase insig. 46 7
  Cupriavidus basilensis FW507-4G11 RR42_RS08740 helicase insig. 21 45
  Cupriavidus basilensis FW507-4G11 RR42_RS03175 DNA helicase strong 23 45
  Paraburkholderia graminis OAS925 ABIE53_003106 superfamily II DNA or RNA helicase insig. 31 12
  Rhodopseudomonas palustris CGA009 TX73_011450 helicase-related protein insig. 43 7
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_00855 RNA helicase sig. 35 11
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04222 ATP-dependent RNA helicase RhlE sig. 34 12
  Burkholderia phytofirmans PsJN BPHYT_RS24775 helicase insig. 31 16
  Paraburkholderia graminis OAS925 ABIE53_003462 ATP-dependent RNA helicase RhlE sig. 34 12
  Bacteroides ovatus ATCC 8483 BACOVA_01961 SNF2 family N-terminal domain protein insig. 21 44
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS01200 DEAD/DEAH box helicase insig. 30 13
  Shewanella amazonensis SB2B Sama_0383 ATP-dependent RNA helicase RhlE (RefSeq) insig. 33 10
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06540 Superfamily II DNA or RNA helicase, SNF2 family insig. 30 16
  Vibrio cholerae E7946 ATCC 55056 CSW01_19065 ATP-dependent helicase insig. 30 13
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14095 hypothetical protein insig. 27 17
  Cupriavidus basilensis FW507-4G11 RR42_RS14810 DEAD/DEAH box helicase insig. 31 12
  Paraburkholderia sabiae LMG 24235 QEN71_RS02265 DEAD/DEAH box helicase strong 32 12
  Erwinia tracheiphila SCR3 LU632_RS20970 DEAD/DEAH box helicase cofit 30 18
  Fusobacterium nucleatum SB010 HUW76_08675 DEAD/DEAH box helicase family protein strong 24 18
  Bacteroides thetaiotaomicron VPI-5482 BT4628 ATP-dependent helicase (NCBI ptt file) insig. 36 8
  Pectobacterium carotovorum WPP14 HER17_RS13325 ATP-dependent RNA helicase RhlE insig. 35 10
  Variovorax sp. OAS795 ABID97_RS22030 DEAD/DEAH box helicase strong 32 10
  Variovorax sp. SCN45 GFF1917 ATP-dependent RNA helicase Bcep18194_A5658 strong 32 10
  Acidovorax sp. GW101-3H11 Ac3H11_1125 ATP-dependent RNA helicase Bcep18194_A5658 no data 32 10
  Paraburkholderia graminis OAS925 ABIE53_006198 superfamily II DNA or RNA helicase insig. 30 16