| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Azospirillum sp. SherDot2 | MPMX19_04985 | | HTH-type transcriptional regulator DmlR | insig. | 100 | 100 |
| o | Dickeya dianthicola ME23 | DZA65_RS14590 | | LysR family transcriptional regulator | insig. | 55 | 97 |
| o | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS21145 | | LysR family transcriptional regulator | insig. | 50 | 97 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS13705 | | LysR family transcriptional regulator | insig. | 41 | 96 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS25255 | | LysR family transcriptional regulator | no data | 40 | 99 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS18220 | | LysR family transcriptional regulator | insig. | 44 | 96 |
| o | Rahnella sp. WP5 | EX31_RS02320 | | LysR family transcriptional regulator | insig. | 42 | 96 |
| | Serratia liquefaciens MT49 | IAI46_16195 | | LysR family transcriptional regulator | insig. | 40 | 94 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_06230 | | LysR family transcriptional regulator | insig. | 41 | 96 |
| | Serratia liquefaciens MT49 | IAI46_19860 | | LysR family transcriptional regulator | insig. | 41 | 96 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_11080 | | HTH-type transcriptional regulator PtxR | insig. | 41 | 98 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS06710 | | LysR family transcriptional regulator | insig. | 37 | 98 |
| o | Klebsiella michiganensis M5al | BWI76_RS22630 | | LysR family transcriptional regulator | insig. | 38 | 96 |
| | Shewanella sp. ANA-3 | Shewana3_1836 | | LysR family transcriptional regulator (RefSeq) | insig. | 34 | 95 |
| | Azospirillum sp. SherDot2 | MPMX19_05002 | | HTH-type transcriptional regulator DmlR | insig. | 38 | 96 |
| | Shewanella oneidensis MR-1 | SO2053 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 35 | 95 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c29160 | | HTH-type transcriptional regulator, LysR family | insig. | 34 | 95 |
| | Shewanella sp. ANA-3 | Shewana3_3800 | | LysR family transcriptional regulator (RefSeq) | insig. | 34 | 96 |
| | Azospirillum brasilense Sp245 | AZOBR_RS21915 | | LysR family transcriptional regulator | strong | 35 | 96 |
| | Shewanella loihica PV-4 | Shew_1539 | | LysR family transcriptional regulator (RefSeq) | insig. | 36 | 94 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0123 | | transcriptional regulator, LysR family (RefSeq) | sig. | 34 | 95 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS00610 | | LysR substrate-binding domain-containing protein | cofit | 38 | 96 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS00835 | | LysR substrate-binding domain-containing protein | insig. | 38 | 96 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3482.1 | | transcriptional regulator | insig. | 38 | 96 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_16295 | | HTH lysR-type domain-containing protein | insig. | 35 | 96 |
| o | Pseudomonas simiae WCS417 | PS417_04770 | | LysR family transcriptional regulator | insig. | 40 | 95 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_06385 | | Transcriptional regulator | insig. | 38 | 96 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS09295 | | LysR substrate-binding domain-containing protein | insig. | 38 | 96 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01123 | | transcriptional regulator, LysR family | insig. | 37 | 94 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS15810 | | LysR family transcriptional regulator | insig. | 36 | 95 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_18255 | | LysR family transcriptional regulator | insig. | 34 | 95 |
| | Shewanella amazonensis SB2B | Sama_3549 | | LyrR family transcriptional regulator (RefSeq) | insig. | 36 | 97 |
| | Shewanella oneidensis MR-1 | SO0369 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 33 | 96 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS12490 | | LysR family transcriptional regulator | insig. | 36 | 95 |
| | Pseudomonas sp. SVBP6 | COO64_RS24630 | | LysR family transcriptional regulator | insig. | 34 | 95 |
| | Pseudomonas sp. BP01 | JOY50_RS05555 | | LysR family transcriptional regulator | insig. | 35 | 98 |
| o | Enterobacter sp. TBS_079 | MPMX20_03624 | | HTH-type transcriptional regulator DmlR | sig. | 37 | 96 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS16370 | | LysR substrate-binding domain-containing protein | insig. | 34 | 96 |
| | Pseudomonas sp. S08-1 | OH686_07440 | | Transcriptional regulator, LysR family | insig. | 38 | 95 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS12790 | | LysR family transcriptional regulator | insig. | 36 | 95 |
| o | Enterobacter asburiae PDN3 | EX28DRAFT_2834 | | Transcriptional regulator | insig. | 38 | 95 |
| o | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF4776 | | LysR-family transcriptional regulator STM2912 | insig. | 35 | 95 |
| | Shewanella amazonensis SB2B | Sama_0005 | | LysR, substrate-binding (RefSeq) | insig. | 36 | 95 |
| | Sinorhizobium meliloti 1021 | SMc02984 | | transcriptional regulator | insig. | 36 | 97 |
| | Azospirillum sp. SherDot2 | MPMX19_02783 | | HTH-type transcriptional regulator DmlR | insig. | 36 | 95 |
| | Sinorhizobium meliloti 1021 | SMc00831 | | transcriptional regulator | insig. | 35 | 95 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS01140 | | LysR family transcriptional regulator | cofit | 36 | 96 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS02115 | | LysR substrate-binding domain-containing protein | insig. | 35 | 96 |
| | Pantoea sp. MT58 | IAI47_01190 | | LysR family transcriptional regulator | insig. | 35 | 93 |
| | Shewanella oneidensis MR-1 | SOA0165 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 35 | 94 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF461 | | Transcriptional regulator, LysR family | insig. | 36 | 93 |
| | Rhodospirillum rubrum S1H | Rru_A2257 | | Transcriptional Regulator, LysR family (NCBI) | strong | 35 | 96 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_18535 | | glutathione-dependent formaldehyde neutralization regulator | insig. | 37 | 93 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS02810 | | LysR substrate-binding domain-containing protein | insig. | 34 | 95 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS08715 | | LysR family transcriptional regulator | insig. | 38 | 94 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS25475 | | LysR family transcriptional regulator | no data | 36 | 94 |
| | Azospirillum brasilense Sp245 | AZOBR_RS30015 | | LysR family transcriptional regulator | insig. | 36 | 95 |
| | Paraburkholderia graminis OAS925 | ABIE53_005907 | | DNA-binding transcriptional LysR family regulator | insig. | 36 | 98 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_03205 | | LysR family transcriptional regulator | no data | 39 | 96 |
| | Pseudomonas sp. SVBP6 | COO64_RS19755 | | LysR substrate-binding domain-containing protein | insig. | 36 | 94 |
| | Variovorax sp. SCN45 | GFF7142 | | Transcriptional regulator, LysR family | insig. | 36 | 96 |
| | Bosea sp. OAE506 | ABIE41_RS20280 | | LysR family transcriptional regulator | insig. | 38 | 97 |
| | Rahnella sp. WP5 | EX31_RS10405 | | LysR family transcriptional regulator | insig. | 35 | 96 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_22530 | | LysR family transcriptional regulator | insig. | 34 | 98 |
| | Lysobacter sp. OAE881 | ABIE51_RS01040 | | LysR family transcriptional regulator | insig. | 37 | 96 |
| | Pseudomonas sp. BP01 | JOY50_RS23715 | | LysR substrate-binding domain-containing protein | insig. | 37 | 94 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS06390 | | LysR family transcriptional regulator | insig. | 36 | 94 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS06390 | | LysR family transcriptional regulator | cofit | 36 | 94 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS09305 | | LysR family transcriptional regulator | insig. | 35 | 93 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS15530 | | LysR family transcriptional regulator | insig. | 35 | 95 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS14890 | | LysR family transcriptional regulator | insig. | 35 | 96 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS20745 | | LysR family transcriptional regulator | insig. | 34 | 95 |
| | Sphingobium sp. HT1-2 | GFF1471 | | Transcriptional regulator, LysR family | cofit | 36 | 95 |
| | Pseudomonas segetis P6 | MPMX49_03437 | | HTH-type transcriptional regulator DmlR | insig. | 36 | 94 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS11850 | | transcriptional regulator | no data | 38 | 92 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3700 | | Transcriptional regulator | insig. | 36 | 95 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01740 | | HTH-type transcriptional regulator DmlR | cofit | 36 | 96 |
| | Pseudomonas stutzeri RCH2 | Psest_2817 | | Transcriptional regulator | insig. | 37 | 93 |
| | Rhodospirillum rubrum S1H | Rru_A1041 | | Transcriptional Regulator, LysR family (NCBI) | insig. | 36 | 95 |
| | Xanthobacter sp. DMC5 | GFF3690 | | HTH-type transcriptional regulator DmlR | insig. | 36 | 95 |
| o | Rhizobium sp. OAE497 | ABIE40_RS23095 | | LysR substrate-binding domain-containing protein | cofit | 36 | 95 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS26820 | | LysR family transcriptional regulator | insig. | 35 | 98 |
| | Pseudomonas simiae WCS417 | PS417_06325 | | LysR family transcriptional regulator | strong | 36 | 94 |
| | Pseudomonas putida KT2440 | PP_1615 | | Transcriptional regulator, LysR family | strong | 36 | 94 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01435 | | HTH-type transcriptional regulator DmlR | insig. | 36 | 94 |
| | Pseudomonas sp. BP01 | JOY50_RS27505 | | LysR family transcriptional regulator | insig. | 35 | 94 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS01420 | | LysR family transcriptional regulator | insig. | 35 | 93 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS03455 | | LysR family transcriptional regulator | insig. | 35 | 96 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00056 | | transcriptional regulator, LysR family | no data | 35 | 97 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS21310 | | LysR family transcriptional regulator | insig. | 37 | 97 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3045 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | strong | 35 | 94 |
| | Rhizobium sp. OAE497 | ABIE40_RS03550 | | LysR family transcriptional regulator | strong | 34 | 96 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS07865 | | LysR family transcriptional regulator | sig. | 37 | 97 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_24930 | | LysR family transcriptional regulator | insig. | 36 | 95 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS02935 | | LysR family transcriptional regulator | insig. | 34 | 95 |
| | Paraburkholderia graminis OAS925 | ABIE53_002646 | | DNA-binding transcriptional LysR family regulator | insig. | 37 | 92 |
| | Pseudomonas sp. S08-1 | OH686_18145 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 37 | 93 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1366 | | transcriptional regulator, LysR family | insig. | 35 | 93 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1366 | | transcriptional regulator, LysR family | insig. | 35 | 93 |
| | Pseudomonas simiae WCS417 | PS417_13080 | | LysR family transcriptional regulator | no data | 35 | 95 |