Homologs of LU632_RS22455 from Erwinia tracheiphila SCR3

topoisomerase DNA-binding C4 zinc finger domain-containing protein
SEED: Similar to C-terminal Zn-finger domain of DNA topoisomerase I
KEGG: putative DNA topoisomerase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Erwinia tracheiphila SCR3 LU632_RS22455 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 100 100
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_12495 topoisomerase DNA-binding C4 zinc finger domain-containing protein cofit 99 100
o Erwinia amylovora T8 OLJFJH_03695 DNA topoisomerase I ssDNA-binding Zn-finger and Zn-ribbon domains insig. 73 100
o Klebsiella michiganensis M5al BWI76_RS25655 DNA topoisomerase type IA zn finger domain-containing protein sig. 72 97
o Klebsiella pneumoniae MKP103 KDGMDA_06525 Uncharacterized protein YrdD insig. 72 96
o Escherichia fergusonii Becca EFB2_00540 DNA topoisomerase 1 cofit 72 97
o Escherichia coli Nissle 1917 ECOLIN_RS18850 type I DNA topoisomerase insig. 72 97
o Escherichia coli ECOR38 HEPCGN_16375 yrdD Uncharacterized protein YrdD sig. 71 97
o Escherichia coli ECRC62 BNILDI_02175 yrdD Uncharacterized protein YrdD cofit 71 97
o Escherichia coli ECOR27 NOLOHH_09345 yrdD Uncharacterized protein YrdD insig. 71 97
o Enterobacter asburiae PDN3 EX28DRAFT_0044 Zn-finger domain associated with topoisomerase type I cofit 69 100
o Escherichia coli BL21 ECD_03134 ssDNA-binding protein, function unknown strong 71 97
o Escherichia coli ECRC100 OKFHMN_17555 yrdD Uncharacterized protein YrdD cofit 71 97
o Escherichia coli ECRC101 MCAODC_08075 yrdD Uncharacterized protein YrdD insig. 71 97
o Escherichia coli ECRC102 NIAGMN_15315 yrdD Uncharacterized protein YrdD insig. 71 97
o Escherichia coli ECRC98 JDDGAC_21175 yrdD Uncharacterized protein YrdD insig. 71 97
o Escherichia coli ECRC99 KEDOAH_10595 yrdD Uncharacterized protein YrdD no data 71 97
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00420 DNA topoisomerase 1 insig. 71 97
o Escherichia coli BW25113 b3283 yrdD predicted DNA topoisomerase (NCBI) sig. 71 97
o Enterobacter sp. TBS_079 MPMX20_04191 DNA topoisomerase 1 sig. 69 100
o Serratia liquefaciens MT49 IAI46_23250 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 67 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2395 Similar to C-terminal Zn-finger domain of DNA topoisomerase I insig. 70 96
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS22550 hypothetical protein cofit 68 97
o Pantoea sp. MT58 IAI47_02305 topoisomerase DNA-binding C4 zinc finger domain-containing protein sig. 68 97
o Dickeya dadantii 3937 DDA3937_RS22495 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 66 97
o Pectobacterium carotovorum WPP14 HER17_RS02240 topoisomerase DNA-binding C4 zinc finger domain-containing protein cofit 66 97
o Dickeya dianthicola ME23 DZA65_RS20325 hypothetical protein insig. 67 97
o Dickeya dianthicola 67-19 HGI48_RS19200 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 66 97
o Rahnella sp. WP5 EX31_RS15960 hypothetical protein insig. 65 96
o Vibrio cholerae E7946 ATCC 55056 CSW01_00255 DNA topoisomerase insig. 54 87
o Shewanella oneidensis MR-1 SO0036 topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) sig. 43 89
o Shewanella sp. ANA-3 Shewana3_0039 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) insig. 43 88
o Alteromonas macleodii MIT1002 MIT1002_00024 DNA topoisomerase 1 cofit 42 87
o Shewanella loihica PV-4 Shew_3731 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) insig. 41 89
o Shewanella amazonensis SB2B Sama_0048 topoisomerase DNA-binding C4 zinc finger domain-containing protein (RefSeq) insig. 43 89
  Desulfovibrio vulgaris Hildenborough JW710 DVU3389 topA DNA topoisomerase I (TIGR) no data 39 86
  Desulfovibrio vulgaris Miyazaki F DvMF_2069 DNA topoisomerase I (RefSeq) no data 39 86
  Methanococcus maripaludis JJ MMJJ_RS00180 DNA topoisomerase I strong 49 48
  Methanococcus maripaludis S2 MMP_RS04955 DNA topoisomerase I strong 49 48
  Marinobacter adhaerens HP15 HP15_1186 DNA topoisomerase III insig. 40 45
  Rhodopseudomonas palustris CGA009 TX73_016155 type I DNA topoisomerase strong 42 37
  Dechlorosoma suillum PS Dsui_2608 topoisomerase IA cofit 35 45
  Bosea sp. OAE506 ABIE41_RS17240 type I DNA topoisomerase no data 43 37
  Xanthobacter sp. DMC5 GFF934 DNA topoisomerase 1 no data 34 49
  Dechlorosoma suillum PS Dsui_2608 topoisomerase IA cofit 34 39
  Rhizobium sp. OAE497 ABIE40_RS07355 type I DNA topoisomerase sig. 42 37
  Methanococcus maripaludis JJ MMJJ_RS00180 DNA topoisomerase I strong 29 64
  Methanococcus maripaludis S2 MMP_RS04955 DNA topoisomerase I strong 29 64
  Sinorhizobium meliloti 1021 SMc01364 DNA topoisomerase I insig. 40 37
  Caulobacter crescentus NA1000 CCNA_02535 DNA topoisomerase I insig. 34 49
  Caulobacter crescentus NA1000 Δfur CCNA_02535 DNA topoisomerase I no data 34 49
  Marinobacter adhaerens HP15 HP15_1186 DNA topoisomerase III insig. 32 40
  Agrobacterium fabrum C58 Atu1304 DNA topoisomerase I no data 35 48
  Rhodospirillum rubrum S1H Rru_A3202 DNA topoisomerase (NCBI) strong 33 49
  Pseudomonas sp. RS175 PFR28_01113 DNA topoisomerase 1 strong 32 48
  Pseudomonas sp. S08-1 OH686_21940 DNA topoisomerase I no data 32 48
  Acinetobacter baumannii LAC-4 RR41_RS16785 type I DNA topoisomerase no data 28 63
  Pseudomonas fluorescens SBW25 PFLU_RS07665 type I DNA topoisomerase strong 31 48
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07665 type I DNA topoisomerase strong 31 48
  Pseudomonas fluorescens FW300-N2C3 AO356_02315 DNA topoisomerase I strong 31 48
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2287 DNA topoisomerase I (EC 5.99.1.2) no data 31 48
  Magnetospirillum magneticum AMB-1 AMB_RS03505 type I DNA topoisomerase no data 36 37
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2450 DNA topoisomerase I, bacterial no data 43 33
  Pseudomonas sp. DMC3 GFF1274 DNA topoisomerase 1 no data 33 43
  Pseudomonas syringae pv. syringae B728a Psyr_3287 DNA topoisomerase I strong 33 43
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3287 DNA topoisomerase I no data 33 43
  Sphingobium sp. HT1-2 GFF115 DNA topoisomerase I (EC 5.99.1.2) no data 37 33
  Methylophilus sp. DMC18 GFF1540 DNA topoisomerase 1 no data 32 43
  Xanthobacter sp. DMC5 GFF934 DNA topoisomerase 1 no data 39 33
  Pseudomonas stutzeri RCH2 Psest_2651 DNA topoisomerase I, bacterial strong 32 48
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01650 DNA topoisomerase 1 no data 31 48
  Pseudomonas orientalis W4I3 QF045_RS10230 type I DNA topoisomerase no data 31 48
  Pseudomonas simiae WCS417 PS417_07590 DNA topoisomerase I no data 31 48
  Pseudomonas syringae pv. syringae B728a Psyr_3287 DNA topoisomerase I strong 29 66
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3287 DNA topoisomerase I no data 29 66
  Pseudomonas sp. BP01 JOY50_RS25050 topA type I DNA topoisomerase no data 30 43
  Pseudomonas putida KT2440 PP_2139 DNA topoisomerase I no data 30 43
  Phaeobacter inhibens DSM 17395 PGA1_c06220 DNA topoisomerase TopA no data 33 37
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4038 DNA topoisomerase I (EC 5.99.1.2) strong 31 48
  Pseudomonas fluorescens FW300-N2E3 AO353_00495 DNA topoisomerase I strong 30 48
  Pseudomonas sp. SVBP6 COO64_RS09410 topA type I DNA topoisomerase strong 31 48
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3906 DNA topoisomerase I (EC 5.99.1.2) strong 30 48
  Pseudomonas aeruginosa MRSN321 DY961_RS01910 topA;go_component=cytoplasm|0005737||IEA;go_function=DNA type I DNA topoisomerase no data 32 43
  Pseudomonas aeruginosa PA14 IKLFDK_15320 type I DNA topoisomerase no data 32 43
  Pseudomonas aeruginosa PUPa3 DQ20_RS33670 topA;go_component=cytoplasm|0005737||IEA;go_function=DNA type I DNA topoisomerase no data 32 43
  Erwinia amylovora T8 OLJFJH_13525 type I DNA topoisomerase no data 29 66
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2450 DNA topoisomerase I, bacterial no data 39 30
  Acinetobacter radioresistens SK82 MPMX26_00365 DNA topoisomerase 1 no data 29 63
  Sphingobium sp. HT1-2 GFF115 DNA topoisomerase I (EC 5.99.1.2) no data 34 47
  Pseudomonas segetis P6 ACVTMO_RS14820 topA type I DNA topoisomerase no data 32 43
  Azospirillum brasilense Sp245 AZOBR_RS15890 DNA topoisomerase I strong 37 37
  Pseudomonas sp. S08-1 OH686_21940 DNA topoisomerase I no data 28 66
  Pseudomonas syringae pv. syringae B728a Psyr_1473 DNA topoisomerase III insig. 43 28
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1473 DNA topoisomerase III insig. 43 28
  Rahnella sp. WP5 EX31_RS09895 type I DNA topoisomerase cofit 29 59
  Escherichia coli ECRC62 BNILDI_18420 type I DNA topoisomerase insig. 28 62
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2568.1 DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster insig. 49 22
  Escherichia coli BL21 ECD_01250 DNA topoisomerase I, omega subunit strong 28 62
  Escherichia fergusonii Becca EFB2_02653 DNA topoisomerase 1 strong 28 62
  Escherichia coli ECOR27 NOLOHH_20270 type I DNA topoisomerase no data 28 62