Homologs of HMPREF1058_RS14300 from Phocaeicola vulgatus CL09T03C04

rRNA cytosine-C5-methyltransferase
SEED: tRNA and rRNA cytosine-C5-methylases

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14300 rRNA cytosine-C5-methyltransferase sig. 100 100
o Phocaeicola dorei CL03T12C01 ABI39_RS09930 rRNA cytosine-C5-methyltransferase sig. 97 100
o Bacteroides thetaiotaomicron VPI-5482 BT2042 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) sig. 62 99
o Bacteroides ovatus ATCC 8483 BACOVA_00671 NOL1/NOP2/sun family protein insig. 60 100
o Bacteroides stercoris CC31F HMPREF1181_RS08100 rRNA cytosine-C5-methyltransferase insig. 59 99
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS16740 rRNA cytosine-C5-methyltransferase insig. 54 99
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_05610 rRNA methyltransferase strong 50 99
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS00225 RNA methyltransferase strong 44 94
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1153 tRNA and rRNA cytosine-C5-methylases insig. 42 97
  Escherichia coli Nissle 1917 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF no data 31 83
  Escherichia coli ECOR38 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 31 83
o Rahnella sp. WP5 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF sig. 30 99
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F insig. 31 83
  Escherichia coli BW25113 b1835 yebU putative nucleolar proteins (VIMSS) strong 31 83
  Escherichia coli ECRC62 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF cofit 30 83
  Escherichia coli BL21 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent no data 30 83
  Escherichia coli ECOR27 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF no data 30 83
o Escherichia fergusonii Becca EFB2_02166 Ribosomal RNA small subunit methyltransferase F insig. 30 88
o Enterobacter sp. TBS_079 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F insig. 28 88
  Dickeya dianthicola ME23 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 31 83
  Dickeya dianthicola 67-19 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 30 83
  Escherichia coli ECRC100 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF no data 30 83
  Escherichia coli ECRC101 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 30 83
  Escherichia coli ECRC102 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF no data 30 83
  Escherichia coli ECRC98 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF cofit 30 83
  Escherichia coli ECRC99 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF no data 30 83
o Enterobacter asburiae PDN3 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase insig. 27 98
  Dickeya dadantii 3937 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 31 83
o Pantoea sp. MT58 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF strong 29 91
o Vibrio cholerae E7946 ATCC 55056 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF cofit 29 97
o Shewanella amazonensis SB2B Sama_2039 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) sig. 28 90
o Serratia liquefaciens MT49 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 30 88
o Shewanella sp. ANA-3 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) insig. 30 90
o Shewanella oneidensis MR-1 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) insig. 30 90
  Kangiella aquimarina DSM 16071 B158DRAFT_0839 NOL1/NOP2/sun family putative RNA methylase insig. 30 81
o Pectobacterium carotovorum WPP14 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 29 98
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) sig. 30 83
o Klebsiella michiganensis M5al BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF sig. 29 98
o Shewanella loihica PV-4 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) insig. 29 87
  Herbaspirillum seropedicae SmR1 HSERO_RS05915 SAM-dependent methyltransferase sig. 28 59
  Dechlorosoma suillum PS Dsui_1543 tRNA/rRNA cytosine-C5-methylase sig. 30 61
  Pseudomonas sp. S08-1 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase cofit 30 58
  Kangiella aquimarina DSM 16071 B158DRAFT_0396 ribosomal RNA small subunit methyltransferase RsmB insig. 28 57
  Enterobacter sp. TBS_079 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B sig. 31 57
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 32 45
  Enterobacter asburiae PDN3 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase cofit 31 57
  Rhodanobacter sp. FW510-T8 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 29 57
  Pectobacterium carotovorum WPP14 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB cofit 29 55
  Dickeya dianthicola ME23 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 30 55
  Dickeya dadantii 3937 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB cofit 30 57
  Desulfovibrio vulgaris Miyazaki F DvMF_2026 Fmu (Sun) domain protein (RefSeq) insig. 33 46
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 cofit 31 55
  Erwinia tracheiphila SCR3 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 29 57
  Paraburkholderia graminis OAS925 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase insig. 35 37
  Desulfovibrio vulgaris Hildenborough JW710 DVU3189 NOL1/NOP2/sun family protein (TIGR) insig. 33 45
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase insig. 31 48
  Alteromonas macleodii MIT1002 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B cofit 31 50
  Klebsiella michiganensis M5al BWI76_RS25680 16S rRNA m5C967 methyltransferase strong 29 57
  Fusobacterium nucleatum SB010 HUW76_07955 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB strong 28 47
  Cupriavidus basilensis FW507-4G11 RR42_RS20450 16S rRNA methyltransferase strong 35 40
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF769 Fmu (Sun) /eukaryotic nucleolar NOL1/Nop2p; tRNA and rRNA cytosine-C5-methylases insig. 29 61
  Azospirillum sp. SherDot2 MPMX19_01594 Ribosomal RNA small subunit methyltransferase B insig. 29 58
  Burkholderia phytofirmans PsJN BPHYT_RS01475 16S rRNA methyltransferase insig. 31 48
  Rhodospirillum rubrum S1H Rru_A0243 tRNA/rRNA cytosine-C5-methylase (NCBI) cofit 28 56
  Rhodanobacter denitrificans MT42 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 28 57
  Dickeya dianthicola 67-19 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB cofit 30 55
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB cofit 29 57
  Paraburkholderia sabiae LMG 24235 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 35 36
  Escherichia coli ECOR38 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB cofit 30 57
  Magnetospirillum magneticum AMB-1 AMB_RS19160 methyltransferase domain-containing protein cofit 30 57
  Escherichia coli ECOR27 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB sig. 30 57
  Escherichia coli ECRC62 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB cofit 30 57
  Shewanella sp. ANA-3 Shewana3_0033 sun protein (RefSeq) strong 29 55
  Pseudomonas fluorescens FW300-N2E3 AO353_10630 16S rRNA methyltransferase sig. 29 60
  Castellaniella sp019104865 MT123 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 30 59
  Escherichia coli ECRC100 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB cofit 29 57
  Escherichia coli ECRC101 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 29 57
  Escherichia coli ECRC102 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 29 57
  Escherichia coli ECRC98 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB cofit 29 57
  Escherichia coli ECRC99 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB no data 29 57
  Pseudomonas stutzeri RCH2 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB sig. 28 58
  Escherichia coli BL21 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent sig. 29 57
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B strong 29 57
  Escherichia coli BW25113 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) strong 29 57
  Methanococcus maripaludis S2 MMP_RS05815 NOL1/NOP2/sun family putative RNA methylase strong 31 47
  Caulobacter crescentus NA1000 CCNA_00101 16S rRNA m5C methyltransferase RsmB sig. 34 47
  Caulobacter crescentus NA1000 Δfur CCNA_00101 16S rRNA m5C methyltransferase RsmB cofit 34 47
  Escherichia fergusonii Becca EFB2_00535 Ribosomal RNA small subunit methyltransferase B insig. 29 57
  Escherichia coli Nissle 1917 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 29 57
  Bosea sp. OAE506 ABIE41_RS05105 RsmB/NOP family class I SAM-dependent RNA methyltransferase insig. 29 57
  Rhodopseudomonas palustris CGA009 TX73_000155 transcription antitermination factor NusB insig. 28 61
  Pantoea sp. MT58 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 28 59
  Shewanella oneidensis MR-1 SO0030 sun sun protein (NCBI ptt file) sig. 29 55
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) sig. 27 60
  Sinorhizobium meliloti 1021 SMc04090 sun protein insig. 31 47
  Methanococcus maripaludis JJ MMJJ_RS08535 NOL1/NOP2/sun family putative RNA methylase strong 30 47
  Serratia liquefaciens MT49 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 29 55
  Rhizobium sp. OAE497 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase insig. 29 61
  Ralstonia solanacearum PSI07 RPSI07_RS12630 SAM-dependent methyltransferase insig. 28 58
  Vibrio cholerae E7946 ATCC 55056 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 32 47