| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas simiae WCS417 | PS417_16120 | | transcriptional regulator | insig. | 100 | 100 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS18090 | | AAA family ATPase | insig. | 89 | 100 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS18090 | | AAA family ATPase | insig. | 89 | 100 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02632 | | hypothetical protein | insig. | 82 | 96 |
| o | Pseudomonas orientalis W4I3 | QF045_RS13860 | | winged helix-turn-helix domain-containing protein | insig. | 74 | 96 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_22240 | | transcriptional regulator | insig. | 50 | 96 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5919 | | Signal transduction response regulator / Tetratricopeptide repeat-containing protein | insig. | 49 | 95 |
| o | Pseudomonas sp. DMC3 | GFF932 | | hypothetical protein | cofit | 48 | 95 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3869 | | Disease resistance protein / Tetratricopeptide repeat-containing protein | insig. | 48 | 95 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_21950 | | transcriptional regulator | insig. | 48 | 89 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_251 | | transcriptional regulator | insig. | 47 | 89 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02633 | | hypothetical protein | cofit | 43 | 89 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3868 | | Disease resistance protein / Tetratricopeptide repeat-containing protein | insig. | 43 | 87 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS18085 | | helix-turn-helix transcriptional regulator | insig. | 43 | 86 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS18085 | | helix-turn-helix transcriptional regulator | insig. | 43 | 86 |
| | Pseudomonas simiae WCS417 | PS417_16115 | | transcriptional regulator | insig. | 42 | 86 |
| o | Pseudomonas sp. RS175 | PFR28_02651 | | hypothetical protein | insig. | 48 | 89 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_22245 | | transcriptional regulator | insig. | 42 | 86 |
| | Pseudomonas orientalis W4I3 | QF045_RS13865 | | winged helix-turn-helix domain-containing protein | insig. | 41 | 86 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5918 | | Disease resistance protein / Tetratricopeptide repeat-containing protein | insig. | 42 | 88 |
| | Pseudomonas segetis P6 | ACVTMO_RS09225 | | ATP-binding protein | insig. | 40 | 90 |
| | Pseudomonas sp. DMC3 | GFF933 | | hypothetical protein | cofit | 40 | 89 |
| | Pseudomonas sp. RS175 | PFR28_02650 | | hypothetical protein | insig. | 39 | 91 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_252 | | Disease resistance protein / Tetratricopeptide repeat-containing protein | insig. | 38 | 96 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_21955 | | transcriptional regulator | insig. | 37 | 96 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS37415 | | winged helix-turn-helix domain-containing protein | insig. | 35 | 90 |
| | Lysobacter sp. OAE881 | ABIE51_RS10330 | | winged helix-turn-helix domain-containing protein | insig. | 35 | 91 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS38880 | | winged helix-turn-helix domain-containing protein | insig. | 32 | 92 |
| | Pseudomonas simiae WCS417 | PS417_10355 | | transcriptional regulator | insig. | 36 | 88 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS37405 | | winged helix-turn-helix domain-containing protein | insig. | 36 | 87 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS33130 | | transcriptional regulator | insig. | 36 | 86 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01106 | | Predicted ATPase | no data | 35 | 87 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS30420 | | transcriptional regulator | insig. | 33 | 93 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS30355 | | transcriptional regulator | insig. | 35 | 87 |
| | Paraburkholderia graminis OAS925 | ABIE53_004787 | | putative ATPase/DNA-binding winged helix-turn-helix (wHTH) protein | insig. | 34 | 90 |
| | Paraburkholderia graminis OAS925 | ABIE53_002241 | | putative ATPase/DNA-binding winged helix-turn-helix (wHTH) protein | insig. | 34 | 84 |
| | Paraburkholderia graminis OAS925 | ABIE53_002254 | | putative ATPase/DNA-binding winged helix-turn-helix (wHTH) protein | insig. | 35 | 86 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01093 | | transcriptional regulator, winged helix family | insig. | 33 | 91 |
| | Rhizobium sp. OAE497 | ABIE40_RS13985 | | adenylate/guanylate cyclase domain-containing protein | insig. | 35 | 71 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS37450 | | winged helix-turn-helix domain-containing protein | insig. | 33 | 91 |
| | Mycobacterium tuberculosis H37Rv | Rv1358 | | Probable transcriptional regulatory protein | insig. | 35 | 68 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03403 | | Predicted ATPase | insig. | 31 | 87 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1253 | | transcriptional regulator | insig. | 33 | 81 |
| | Mycobacterium tuberculosis H37Rv | Rv2488c | | Probable transcriptional regulatory protein (LuxR-family) | insig. | 36 | 68 |
| | Mycobacterium tuberculosis H37Rv | Rv0890c | | Probable transcriptional regulatory protein (probably LuxR-family) | insig. | 37 | 61 |
| | Mycobacterium tuberculosis H37Rv | Rv0894 | | Possible transcriptional regulatory protein (possibly LuxR-family) | no data | 33 | 71 |
| | Mycobacterium tuberculosis H37Rv | Rv0386 | | Probable transcriptional regulatory protein (probably LuxR/UhpA-family) | insig. | 32 | 71 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00036 | | DNA-binding winged helix-turn-helix (wHTH) domain-containing protein | insig. | 30 | 90 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS30635 | | winged helix-turn-helix domain-containing protein | insig. | 44 | 17 |
| | Pseudomonas sp. DMC3 | GFF2809 | | Protein-glutamate methylesterase/protein-glutamine glutaminase | insig. | 40 | 19 |
| | Pseudomonas putida KT2440 | PP_5241 | | DNA-binding response regulator, LuxR family | sig. | 38 | 18 |
| | Paraburkholderia graminis OAS925 | ABIE53_006060 | | DNA-binding winged helix-turn-helix (wHTH) protein/predicted ATPase | sig. | 29 | 55 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2715 | | Adenylate cyclase (EC 4.6.1.1) | insig. | 29 | 22 |
| | Sinorhizobium meliloti 1021 | SMc01198 | | hypothetical protein | insig. | 37 | 17 |
| | Rhizobium sp. OAE497 | ABIE40_RS14340 | | winged helix-turn-helix domain-containing protein | insig. | 37 | 18 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1060 | | Adenylate cyclase (EC 4.6.1.1) | insig. | 34 | 25 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_28480 | | CadC-family transcriptional regulator | insig. | 28 | 19 |
| | Sinorhizobium meliloti 1021 | SM_b20702 | | regulatory protein | insig. | 30 | 19 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_2466 | | two component transcriptional regulator, winged helix family | strong | 32 | 19 |
| | Rhodopseudomonas palustris CGA009 | TX73_024820 | | phosphate regulon transcriptional regulator PhoB | insig. | 33 | 19 |
| | Azospirillum brasilense Sp245 | AZOBR_RS13405 | | putative transcriptional regulatory protein HTH DNA binding domain | insig. | 30 | 19 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_1284 | | DNA-binding winged-HTH domains | insig. | 34 | 16 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS06555 | | tetratricopeptide repeat protein | insig. | 34 | 19 |
| | Klebsiella pneumoniae MRSN742743 | KFA93_RS03145 | cadC;go_function=DNA | lysine decarboxylation/transport transcriptional activator CadC | insig. | 32 | 18 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4215 | | Adenylate cyclase (EC 4.6.1.1) | insig. | 30 | 19 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_0346 | | DNA-binding winged-HTH domains | insig. | 35 | 19 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_15465 | | lysine decarboxylation/transport transcriptional activator CadC | insig. | 32 | 18 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS03105 | | response regulator transcription factor | strong | 29 | 23 |
| | Xanthobacter sp. DMC5 | GFF2342 | | Phosphate regulon transcriptional regulatory protein PhoB | no data | 32 | 18 |
| | Caulobacter crescentus NA1000 | CCNA_00296 | | phosphate regulon response regulator PhoB | strong | 36 | 14 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_00296 | | phosphate regulon response regulator PhoB | cofit | 36 | 14 |
| | Klebsiella michiganensis M5al | BWI76_RS07180 | | transcriptional regulator CadC | insig. | 30 | 18 |
| | Rhodospirillum rubrum S1H | Rru_A0603 | | Two component Transcriptional regulator, Winged helix family (NCBI) | cofit | 32 | 19 |
| | Pectobacterium carotovorum WPP14 | HER17_RS17745 | | response regulator transcription factor | cofit | 31 | 17 |
| | Escherichia fergusonii Becca | EFB2_04449 | | Transcriptional activator CadC | insig. | 29 | 18 |
| | Escherichia coli ECOR27 | NOLOHH_04730 | cadC | lysine decarboxylation/transport transcriptional activator CadC | insig. | 29 | 18 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS23915 | | lysine decarboxylation/transport transcriptional activator CadC | insig. | 29 | 18 |
| | Bosea sp. OAE506 | ABIE41_RS08910 | | phosphate regulon transcriptional regulator PhoB | strong | 35 | 14 |
| | Sinorhizobium meliloti 1021 | SMc02140 | | phosphate regulon transcriptional regulatory protein | strong | 30 | 20 |
| | Escherichia coli BL21 | ECD_04004 | | cadBA operon transcriptional activator | cofit | 29 | 18 |
| | Escherichia coli ECOR38 | HEPCGN_11100 | cadC | lysine decarboxylation/transport transcriptional activator CadC | insig. | 29 | 18 |
| | Escherichia coli ECRC100 | OKFHMN_12465 | cadC | lysine decarboxylation/transport transcriptional activator CadC | cofit | 29 | 18 |
| | Escherichia coli ECRC101 | MCAODC_02975 | cadC | lysine decarboxylation/transport transcriptional activator CadC | insig. | 29 | 18 |
| | Escherichia coli ECRC102 | NIAGMN_10310 | cadC | lysine decarboxylation/transport transcriptional activator CadC | insig. | 29 | 18 |
| | Escherichia coli ECRC62 | BNILDI_06760 | cadC | lysine decarboxylation/transport transcriptional activator CadC | insig. | 29 | 18 |
| | Escherichia coli ECRC98 | JDDGAC_16100 | cadC | lysine decarboxylation/transport transcriptional activator CadC | insig. | 29 | 18 |
| | Escherichia coli ECRC99 | KEDOAH_15700 | cadC | lysine decarboxylation/transport transcriptional activator CadC | no data | 29 | 18 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_03910 | | Transcriptional activator CadC | sig. | 29 | 18 |
| | Escherichia coli BW25113 | b4133 | cadC | DNA-binding transcriptional activator (NCBI) | sig. | 29 | 18 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_2158 | | Transcriptional regulatory protein, C terminal | insig. | 34 | 15 |
| | Agrobacterium fabrum C58 | Atu0425 | | two component response regulator | no data | 29 | 20 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS21985 | | transcriptional regulator | insig. | 38 | 15 |
| | Rhizobium sp. OAE497 | ABIE40_RS02310 | | phosphate regulon transcriptional regulator PhoB | insig. | 29 | 20 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS14655 | | winged helix-turn-helix domain-containing protein | cofit | 32 | 22 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS14940 | | winged helix-turn-helix domain-containing protein | cofit | 32 | 22 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c15730 | | phosphate regulon transcriptional regulatory protein PhoB | strong | 32 | 14 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_2178 | | Two-component system response regulator QseB | insig. | 31 | 18 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS09515 | | response regulator transcription factor | insig. | 26 | 20 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS09180 | | DNA-binding response regulator | no data | 28 | 22 |
| | Variovorax sp. SCN45 | GFF1781 | | Two-component transcriptional response regulator, LuxR family | insig. | 34 | 19 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS06335 | | chemotaxis protein CheY | insig. | 33 | 16 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_16895 | | DNA-binding response regulator | insig. | 29 | 16 |
| | Alteromonas macleodii MIT1002 | MIT1002_01389 | | KDP operon transcriptional regulatory protein KdpE | cofit | 28 | 23 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_2055 | | DNA-binding winged-HTH domains | insig. | 33 | 14 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2450 | | Transcriptional activator of cad operon | insig. | 28 | 17 |
| | Lysobacter sp. OAE881 | ABIE51_RS00245 | | tetratricopeptide repeat protein | insig. | 33 | 17 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS07290 | | DNA-binding response regulator | insig. | 30 | 24 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_2932 | | Serine/threonine protein kinase | insig. | 30 | 21 |
| | Marinobacter adhaerens HP15 | HP15_1185 | | two component transcriptional regulator, winged helix family | insig. | 28 | 23 |
| | Shewanella amazonensis SB2B | Sama_0430 | | putative transcriptional regulator, CadC (RefSeq) | insig. | 27 | 36 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS14310 | | winged helix-turn-helix domain-containing protein | insig. | 32 | 18 |
| | Ralstonia solanacearum GMI1000 | RS_RS24590 | | DNA-binding response regulator | insig. | 30 | 24 |
| | Pectobacterium carotovorum WPP14 | HER17_RS15050 | | two-component system response regulator KdpE | cofit | 29 | 17 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS08970 | | phosphate regulon transcriptional regulator PhoB | no data | 35 | 14 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_14620 | | Transcriptional regulator | no data | 34 | 18 |
| | Erwinia tracheiphila SCR3 | LU632_RS20485 | | transcriptional regulator | no data | 34 | 18 |
| | Agrobacterium fabrum C58 | Atu5119 | | two component response regulator | sig. | 32 | 19 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS22890 | | response regulator transcription factor | insig. | 32 | 22 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS16415 | | DNA-binding response regulator | cofit | 32 | 22 |
| | Ralstonia solanacearum UW163 | UW163_RS17155 | | DNA-binding response regulator | insig. | 32 | 22 |
| | Azospirillum brasilense Sp245 | AZOBR_RS31475 | | chemotaxis protein CheY | insig. | 32 | 15 |
| | Serratia liquefaciens MT49 | IAI46_20155 | | lysine decarboxylation/transport transcriptional activator CadC | insig. | 29 | 18 |
| | Pseudomonas sp. SVBP6 | COO64_RS09705 | | response regulator | insig. | 29 | 19 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS17335 | | DNA-binding response regulator | cofit | 28 | 19 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS06365 | | DNA-binding response regulator | insig. | 28 | 19 |
| | Ralstonia solanacearum UW163 | UW163_RS21815 | | DNA-binding response regulator | insig. | 28 | 19 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF4742 | | Type III secretion transcriptional activator HilA | cofit | 41 | 12 |
| | Variovorax sp. SCN45 | GFF11 | | Two-component transcriptional response regulator, OmpR family | insig. | 35 | 13 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS16220 | | transcriptional regulator | no data | 33 | 19 |
| | Paraburkholderia graminis OAS925 | ABIE53_003418 | | two-component system response regulator QseB | strong | 33 | 19 |
| | Shewanella amazonensis SB2B | Sama_0607 | | putative transcriptional regulator, CadC (RefSeq) | insig. | 30 | 19 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_4648 | | DNA-binding response regulator | insig. | 27 | 19 |
| | Variovorax sp. OAS795 | ABID97_RS02285 | | response regulator transcription factor | strong | 33 | 20 |
| | Caulobacter crescentus NA1000 | CCNA_01351 | | two-component response regulator protein | cofit | 31 | 19 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_01351 | | two-component response regulator protein | cofit | 31 | 19 |
| | Erwinia amylovora T8 | OLJFJH_17030 | | two-component system response regulator KdpE | insig. | 27 | 19 |
| | Erwinia amylovora T8 | OLJFJH_07890 | | Transcriptional regulator | insig. | 38 | 15 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS06935 | | phosphate regulon transcriptional regulatory protein PhoB | insig. | 31 | 16 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF4475 | | sensor histidine kinase | insig. | 30 | 16 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS14745 | | phosphate regulon transcriptional regulator PhoB | strong | 31 | 17 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS15030 | | phosphate regulon transcriptional regulator PhoB | strong | 31 | 17 |
| | Methylophilus sp. DMC18 | GFF2684 | | KDP operon transcriptional regulatory protein KdpE | insig. | 28 | 22 |
| | Lysobacter sp. OAE881 | ABIE51_RS10700 | | winged helix-turn-helix domain-containing protein | insig. | 40 | 12 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_03790 | phoB | phosphate regulon transcriptional regulator PhoB | strong | 31 | 17 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS04005 | | response regulator transcription factor | strong | 26 | 18 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS04235 | | response regulator transcription factor | strong | 26 | 18 |
| | Sinorhizobium meliloti 1021 | SMa0969 | | Response regulator | insig. | 36 | 14 |