Homologs of GFF106 from Sphingobium sp. HT1-2

mRNA 3-end processing factor
SEED: mRNA 3-end processing factor
KEGG: putative mRNA 3-end processing factor

85 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF106 mRNA 3-end processing factor insig. 100 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3852 putative exonuclease, DNA ligase-associated insig. 71 100
o Azospirillum brasilense Sp245 AZOBR_RS09955 beta-lactamase insig. 65 98
o Azospirillum sp. SherDot2 MPMX19_02216 hypothetical protein insig. 62 98
o Sinorhizobium meliloti 1021 SMc03176 hypothetical protein insig. 61 98
o Caulobacter crescentus NA1000 CCNA_03759 mRNA 3'-end processing factor sig. 63 98
o Caulobacter crescentus NA1000 Δfur CCNA_03759 mRNA 3'-end processing factor cofit 63 98
o Rhizobium sp. OAE497 ABIE40_RS04630 ligase-associated DNA damage response exonuclease insig. 58 98
o Alteromonas macleodii MIT1002 MIT1002_03767 Ribonuclease insig. 55 99
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08710 ligase-associated DNA damage response exonuclease insig. 58 98
o Bosea sp. OAE506 ABIE41_RS24100 ligase-associated DNA damage response exonuclease insig. 55 98
o Rhodopseudomonas palustris CGA009 TX73_004140 ligase-associated DNA damage response exonuclease insig. 57 98
o Agrobacterium fabrum C58 Atu0839 hypothetical protein sig. 58 97
o Xanthobacter sp. DMC5 GFF152 hypothetical protein insig. 55 98
o Phaeobacter inhibens DSM 17395 PGA1_262p00510 Predicted exonuclease of the beta-lactamase fold involved in RNA processing sig. 54 98
o Variovorax sp. OAS795 ABID97_RS00395 ligase-associated DNA damage response exonuclease insig. 43 97
o Ralstonia sp. UNC404CL21Col ABZR87_RS21350 ligase-associated DNA damage response exonuclease insig. 42 98
o Variovorax sp. SCN45 GFF3696 mRNA 3-end processing factor insig. 42 97
o Pseudomonas putida KT2440 PP_1106 conserved protein of unknown function insig. 42 97
o Pseudomonas sp. BP01 JOY50_RS24065 ligase-associated DNA damage response exonuclease insig. 42 97
o Paraburkholderia graminis OAS925 ABIE53_005969 putative mRNA 3-end processing factor insig. 40 97
o Burkholderia phytofirmans PsJN BPHYT_RS26305 exonuclease insig. 40 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3654.1 hypothetical protein insig. 43 94
o Pseudomonas sp. S08-1 OH686_06055 putative exonuclease, DNA ligase-associated insig. 41 97
o Paraburkholderia sabiae LMG 24235 QEN71_RS20345 ligase-associated DNA damage response exonuclease insig. 41 96
o Pseudomonas stutzeri RCH2 Psest_1649 Predicted exonuclease of the beta-lactamase fold involved in RNA processing insig. 40 91
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02820 putative mRNA 3-end processing factor insig. 40 97
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3181 mRNA 3-end processing factor insig. 40 97
o Lysobacter sp. OAE881 ABIE51_RS03750 ligase-associated DNA damage response exonuclease insig. 43 95
o Pseudomonas syringae pv. syringae B728a Psyr_3872 conserved hypothetical protein insig. 39 91
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3872 conserved hypothetical protein insig. 39 91
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1242 mRNA 3-end processing factor insig. 40 95
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS13225 exonuclease sig. 35 92
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS09100 DNA ligase-associated DEXH box helicase insig. 36 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2956 mRNA 3-end processing factor insig. 39 98
o Pseudomonas orientalis W4I3 QF045_RS09270 ligase-associated DNA damage response exonuclease insig. 39 97
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01455 hypothetical protein cofit 39 97
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS20350 ligase-associated DNA damage response exonuclease insig. 37 97
o Pseudomonas sp. RS175 PFR28_00509 hypothetical protein insig. 39 97
o Dinoroseobacter shibae DFL-12 Dshi_2587 DNA damage response exonuclease, associated with a ligase (from data) strong 41 97
o Pseudomonas sp. DMC3 GFF2149 hypothetical protein insig. 39 97
o Pseudomonas fluorescens SBW25 PFLU_RS06490 ligase-associated DNA damage response exonuclease insig. 38 97
o Pseudomonas fluorescens SBW25-INTG PFLU_RS06490 ligase-associated DNA damage response exonuclease insig. 38 97
o Pseudomonas simiae WCS417 PS417_06425 exonuclease insig. 38 97
o Pseudomonas fluorescens FW300-N2C3 AO356_05485 DNA ligase-associated DEXH box helicase insig. 38 97
o Herbaspirillum seropedicae SmR1 HSERO_RS11400 exonuclease sig. 38 97
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS14095 MBL fold metallo-hydrolase insig. 32 92
o Cellulophaga baltica 18 M666_RS06770 ligase-associated DNA damage response exonuclease insig. 35 93
o Acidovorax sp. GW101-3H11 Ac3H11_4921 mRNA 3-end processing factor insig. 39 91
  Ralstonia solanacearum GMI1000 RS_RS00995 MBL fold metallo-hydrolase insig. 28 49
  Kangiella aquimarina DSM 16071 B158DRAFT_1678 Predicted exonuclease of the beta-lactamase fold involved in RNA processing insig. 31 33
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01950 MBL fold metallo-hydrolase insig. 28 71
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS11070 MBL fold metallo-hydrolase insig. 32 32
  Ralstonia sp. UNC404CL21Col ABZR87_RS19990 MBL fold metallo-hydrolase insig. 26 83
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3226 Metallo-beta-lactamase family protein, RNA-specific insig. 34 32
  Methanococcus maripaludis JJ MMJJ_RS07240 MBL fold metallo-hydrolase strong 25 43
  Methanococcus maripaludis S2 MMP_RS07115 MBL fold metallo-hydrolase strong 25 43
  Marinobacter adhaerens HP15 HP15_2406 metallo-beta-lactamase family protein insig. 32 31
  Marinobacter adhaerens HP15 HP15_1324 metallo-beta-lactamase family protein insig. 31 44
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1519 Metallo-beta-lactamase family protein, RNA-specific insig. 27 68
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20845 MBL fold hydrolase insig. 27 35
  Pseudomonas stutzeri RCH2 Psest_1808 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain insig. 35 31
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS09240 MBL fold metallo-hydrolase insig. 27 35
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS14480 MBL fold metallo-hydrolase insig. 31 35
  Pseudomonas fluorescens FW300-N2C3 AO356_23925 mRNA 3'-end processing factor insig. 32 39
  Sphingobium sp. HT1-2 GFF5006 Metallo-beta-lactamase family protein, RNA-specific cofit 31 33
  Pseudomonas sp. RS175 PFR28_02316 Ribonuclease insig. 26 68
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_05985 MBL fold hydrolase insig. 29 32
  Rhodanobacter sp. FW510-T8 OKGIIK_00845 ySH1 MBL fold metallo-hydrolase insig. 31 35
  Rhodanobacter denitrificans MT42 LRK55_RS13845 MBL fold metallo-hydrolase insig. 33 35
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS14125 MBL fold metallo-hydrolase insig. 33 35
  Pseudomonas sp. BP01 JOY50_RS16110 MBL fold metallo-hydrolase RNA specificity domain-containing protein insig. 34 31
  Burkholderia phytofirmans PsJN BPHYT_RS27805 RNA-metabolising metallo-beta-lactamase insig. 23 68
  Pseudomonas putida KT2440 PP_3291 Metallo-beta-lactamase family protein insig. 30 39
  Pseudomonas putida KT2440 PP_1775 Metallo-beta-lactamase family protein strong 34 31
  Pseudomonas stutzeri RCH2 Psest_2869 Predicted exonuclease of the beta-lactamase fold involved in RNA processing insig. 30 34
  Rhodanobacter denitrificans MT42 LRK55_RS13890 MBL fold metallo-hydrolase insig. 34 34
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS14170 MBL fold metallo-hydrolase insig. 34 34
  Dechlorosoma suillum PS Dsui_1635 putative exonuclease of the beta-lactamase fold involved in RNA processing cofit 29 35
  Castellaniella sp019104865 MT123 ABCV34_RS06000 MBL fold metallo-hydrolase insig. 31 33
  Variovorax sp. SCN45 GFF6952 Metallo-beta-lactamase family protein, RNA-specific insig. 32 28
  Vibrio cholerae E7946 ATCC 55056 CSW01_01365 MBL fold hydrolase cofit 32 31
  Pseudomonas fluorescens FW300-N2E3 AO353_19925 mRNA 3'-end processing factor insig. 28 39
  Marinobacter adhaerens HP15 HP15_2380 metallo-beta-lactamase family protein insig. 33 33
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS04385 MBL fold metallo-hydrolase insig. 34 34