| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Enterobacter asburiae PDN3 | EX28DRAFT_1988 | | Predicted ATP-dependent protease | cofit | 100 | 100 |
| o | Enterobacter sp. TBS_079 | MPMX20_01605 | | Lon protease | insig. | 96 | 100 |
| o | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF3246 | | ATP-dependent protease La (EC 3.4.21.53) Type II | cofit | 76 | 100 |
| o | Escherichia fergusonii Becca | EFB2_03116 | | Lon protease | insig. | 75 | 100 |
| o | Escherichia coli Nissle 1917 | ECOLIN_RS05015 | | Lon protease family protein | sig. | 74 | 100 |
| o | Escherichia coli ECOR38 | HEPCGN_23275 | ycbZ | Putative Lon protease-like protein | insig. | 74 | 100 |
| o | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02711 | | Lon protease | cofit | 74 | 100 |
| o | Escherichia coli BW25113 | b0955 | ycbZ | predicted peptidase (NCBI) | strong | 74 | 100 |
| o | Escherichia coli BL21 | ECD_00959 | | putative peptidase | cofit | 74 | 100 |
| o | Escherichia coli ECRC100 | OKFHMN_05245 | ycbZ | Putative Lon protease-like protein | cofit | 74 | 100 |
| o | Escherichia coli ECRC101 | MCAODC_24635 | ycbZ | Putative Lon protease-like protein | sig. | 74 | 100 |
| o | Escherichia coli ECRC102 | NIAGMN_02965 | ycbZ | Putative Lon protease-like protein | insig. | 74 | 100 |
| o | Escherichia coli ECRC98 | JDDGAC_08855 | ycbZ | Putative Lon protease-like protein | cofit | 74 | 100 |
| o | Escherichia coli ECRC99 | KEDOAH_22490 | ycbZ | Putative Lon protease-like protein | no data | 74 | 100 |
| o | Escherichia coli ECOR27 | NOLOHH_21800 | ycbZ | Putative Lon protease-like protein | cofit | 74 | 100 |
| o | Escherichia coli ECRC62 | BNILDI_19965 | ycbZ | Putative Lon protease-like protein | insig. | 74 | 100 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_18190 | | Lon protease | sig. | 72 | 100 |
| o | Klebsiella michiganensis M5al | BWI76_RS09960 | | Lon protease | strong | 70 | 100 |
| o | Erwinia amylovora T8 | OLJFJH_15945 | | Lon protease | cofit | 60 | 100 |
| o | Serratia liquefaciens MT49 | IAI46_08865 | | Lon protease family protein | strong | 59 | 100 |
| o | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_20515 | | Endopeptidase La | cofit | 57 | 100 |
| o | Erwinia tracheiphila SCR3 | LU632_RS10000 | | Lon protease family protein | cofit | 57 | 100 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS04675 | | Lon protease family protein | cofit | 57 | 100 |
| o | Pantoea sp. MT58 | IAI47_12655 | | Lon protease family protein | strong | 57 | 100 |
| o | Pectobacterium carotovorum WPP14 | HER17_RS08410 | | Lon protease family protein | cofit | 54 | 99 |
| o | Dickeya dadantii 3937 | DDA3937_RS13250 | | Lon protease family protein | cofit | 54 | 99 |
| o | Dickeya dianthicola 67-19 | HGI48_RS13315 | | Lon protease family protein | cofit | 54 | 99 |
| o | Dickeya dianthicola ME23 | DZA65_RS13790 | | Lon protease family protein | insig. | 54 | 99 |
| o | Rahnella sp. WP5 | EX31_RS18050 | | Lon protease family protein | insig. | 53 | 100 |
| o | Vibrio cholerae E7946 ATCC 55056 | CSW01_07450 | | Lon protease family protein | insig. | 37 | 99 |
| | Shewanella loihica PV-4 | Shew_1976 | | putative ATP-dependent protease La-relatedprotein (RefSeq) | strong | 39 | 69 |
| | Acinetobacter radioresistens SK82 | MPMX26_01059 | | Lon protease | sig. | 39 | 72 |
| | Shewanella sp. ANA-3 | Shewana3_1160 | | ATP-dependent protease, putative (RefSeq) | insig. | 39 | 68 |
| | Shewanella oneidensis MR-1 | SO3391 | | ATP-dependent protease, putative (NCBI ptt file) | sig. | 39 | 68 |
| | Acinetobacter baumannii LAC-4 | RR41_RS05360 | | ATP-binding protein | insig. | 39 | 72 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_18990 | | ATP-dependent protease | cofit | 38 | 68 |
| | Dechlorosoma suillum PS | Dsui_2223 | | putative ATP-dependent protease | insig. | 37 | 74 |
| | Marinobacter adhaerens HP15 | HP15_1052 | | peptidase S16, lon domain-containing protein | strong | 38 | 68 |
| | Rhodospirillum rubrum S1H | Rru_A3583 | | ATP-dependent protease-like (NCBI) | insig. | 38 | 74 |
| | Shewanella amazonensis SB2B | Sama_2406 | | ATP-dependent protease, putative (RefSeq) | strong | 38 | 69 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS02920 | | ATP-dependent protease | cofit | 35 | 75 |
| | Pseudomonas sp. S08-1 | OH686_16260 | | ATP-dependent protease La Type II | insig. | 36 | 77 |
| | Pseudomonas sp. BP01 | JOY50_RS24670 | | Lon protease family protein | insig. | 35 | 81 |
| | Shewanella sp. ANA-3 | Shewana3_1607 | | ATP-dependent protease (RefSeq) | strong | 37 | 73 |
| | Pseudomonas stutzeri RCH2 | Psest_3396 | | Predicted ATP-dependent protease | sig. | 35 | 76 |
| | Marinobacter adhaerens HP15 | HP15_1352 | | peptidase S16, lon domain protein | insig. | 36 | 69 |
| | Shewanella oneidensis MR-1 | SO1857 | | hypothetical ATP-dependent protease (NCBI ptt file) | strong | 37 | 72 |
| | Pseudomonas putida KT2440 | PP_0680 | | ATP-dependent protease-like protein | strong | 35 | 80 |
| | Pseudomonas sp. DMC3 | GFF3971 | | hypothetical protein | cofit | 35 | 76 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_14055 | | ATP-dependent protease | sig. | 35 | 79 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS26150 | | ATP-binding protein | strong | 36 | 76 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS26150 | | ATP-binding protein | strong | 36 | 76 |
| | Pseudomonas simiae WCS417 | PS417_24230 | | ATP-dependent protease | strong | 36 | 76 |
| | Pseudomonas sp. SVBP6 | COO64_RS03035 | | Lon protease family protein | insig. | 35 | 77 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5093 | | ATP-dependent protease La (EC 3.4.21.53) Type II | sig. | 35 | 76 |
| | Alteromonas macleodii MIT1002 | MIT1002_01859 | | Lon protease | insig. | 35 | 71 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_15765 | | ATP-dependent protease | insig. | 35 | 77 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1459 | | ATP-dependent protease La (EC 3.4.21.53) Type II | insig. | 35 | 80 |
| | Pseudomonas segetis P6 | ACVTMO_RS19595 | | Lon protease family protein | insig. | 36 | 77 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS23565 | | ATP-binding protein | sig. | 36 | 68 |
| | Pseudomonas orientalis W4I3 | QF045_RS26485 | | AAA family ATPase | insig. | 35 | 76 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_00640 | | ATP-dependent protease | strong | 36 | 68 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS56030 | | ATP-binding protein | sig. | 36 | 68 |
| | Pseudomonas sp. RS175 | PFR28_03779 | | hypothetical protein | strong | 35 | 76 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04993 | | hypothetical protein | cofit | 36 | 76 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4259 | | ATP-dependent protease, putative | insig. | 34 | 77 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4259 | | ATP-dependent protease, putative | insig. | 34 | 77 |
| | Shewanella amazonensis SB2B | Sama_1606 | | ATP-dependent protease (RefSeq) | sig. | 35 | 75 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0312 | | peptidase S16 lon domain protein (RefSeq) | insig. | 32 | 73 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1893 | | ATP-dependent protease, putative (TIGR) | sig. | 35 | 73 |
| | Shewanella loihica PV-4 | Shew_1818 | | ATP-dependent protease (RefSeq) | no data | 38 | 59 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1472 | | ATP-dependent protease, putative (TIGR) | insig. | 35 | 69 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0590 | | ATP-dependent protease, putative (RefSeq) | strong | 34 | 69 |
| | Methylophilus sp. DMC18 | GFF1036 | | Lon protease | insig. | 32 | 76 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_106 | | ATP-dependent protease La (EC 3.4.21.53) Type II | insig. | 30 | 68 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2787 | | ATP-dependent protease La (EC 3.4.21.53) Type II | insig. | 30 | 59 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2788 | | ATP-dependent protease La (EC 3.4.21.53) Type II | no data | 51 | 16 |
| | Methanococcus maripaludis JJ | MMJJ_RS08245 | | ATP-dependent protease LonB | no data | 34 | 20 |
| | Methanococcus maripaludis S2 | MMP_RS06110 | | ATP-dependent protease LonB | strong | 34 | 20 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_1038 | | ATP-dependent protease La | cofit | 35 | 18 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0112 | | ATP-dependent protease La (RefSeq) | strong | 33 | 18 |
| | Rhizobium sp. OAE497 | ABIE40_RS07100 | | endopeptidase La | no data | 33 | 21 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS07320 | | endopeptidase La | strong | 42 | 13 |
| | Acinetobacter baumannii LAC-4 | RR41_RS09075 | | endopeptidase La | sig. | 39 | 18 |
| | Agrobacterium fabrum C58 | Atu1261 | | ATP-dependent protease LA | no data | 33 | 21 |
| | Sinorhizobium meliloti 1021 | SMc01905 | | ATP-dependent protease LA protein | no data | 38 | 15 |
| | Rhodopseudomonas palustris CGA009 | TX73_015345 | | endopeptidase La | no data | 38 | 15 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1191 | lon | ATP-dependent protease La, putative (TIGR) | strong | 37 | 18 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_08030 | lon | endopeptidase La | strong | 35 | 16 |
| | Acinetobacter radioresistens SK82 | MPMX26_02299 | | Lon protease | strong | 38 | 18 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS12135 | | endopeptidase La | insig. | 36 | 15 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS16460 | | endopeptidase La | strong | 41 | 13 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS16735 | | endopeptidase La | strong | 41 | 13 |
| | Bosea sp. OAE506 | ABIE41_RS18050 | | endopeptidase La | no data | 39 | 13 |
| | Pseudomonas sp. SVBP6 | COO64_RS19205 | lon | endopeptidase La | cofit | 26 | 41 |
| | Azospirillum sp. SherDot2 | MPMX19_01545 | | Lon protease | insig. | 24 | 45 |
| | Pseudomonas segetis P6 | ACVTMO_RS11250 | lon | endopeptidase La | sig. | 39 | 13 |
| | Marinobacter adhaerens HP15 | HP15_2183 | | DNA-binding ATP-dependent protease La | strong | 35 | 15 |
| | Xanthobacter sp. DMC5 | GFF1156 | | Lon protease | no data | 34 | 15 |
| | Dinoroseobacter shibae DFL-12 | Dshi_1777 | | ATP-dependent protease La (RefSeq) | strong | 38 | 13 |