Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| Caulobacter crescentus NA1000 | CCNA_01246 | | methyltransferase | sig. | 100 | 100 |
o | Caulobacter crescentus NA1000 Δfur | CCNA_01246 | | methyltransferase | cofit | 100 | 100 |
o | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS05440 | | class I SAM-dependent methyltransferase | insig. | 69 | 99 |
o | Sphingomonas koreensis DSMZ 15582 | Ga0059261_1998 | | Predicted SAM-dependent methyltransferases | sig. | 52 | 96 |
| Sinorhizobium meliloti 1021 | SMc01131 | | hypothetical protein | sig. | 49 | 96 |
o | Rhizobium sp. OAE497 | ABIE40_RS01815 | | class I SAM-dependent methyltransferase | insig. | 50 | 97 |
o | Agrobacterium fabrum C58 | Atu0340 | | SAM dependent methyltransferase | insig. | 50 | 97 |
o | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS16035 | | oxidoreductase | sig. | 39 | 84 |
o | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS06610 | | class I SAM-dependent methyltransferase | no data | 40 | 82 |
o | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_19545 | | oxidoreductase | strong | 41 | 96 |
| Shewanella amazonensis SB2B | Sama_2965 | | putative SAM-dependent methyltransferase (RefSeq) | insig. | 40 | 32 |
| Bacteroides ovatus ATCC 8483 | BACOVA_05134 | | hypothetical protein | insig. | 30 | 56 |
| Dyella japonica UNC79MFTsu3.2 | ABZR86_RS21235 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | insig. | 31 | 63 |
| Shewanella oneidensis MR-1 | SO1149 | | hypothetical SAM-dependent methyltransferase (NCBI ptt file) | strong | 40 | 30 |
| Bacteroides thetaiotaomicron VPI-5482 | BT4331 | | conserved hypothetical protein (NCBI ptt file) | strong | 30 | 56 |
| Shewanella sp. ANA-3 | Shewana3_0977 | | SAM-dependent methyltransferase (RefSeq) | insig. | 40 | 30 |
| Alteromonas macleodii MIT1002 | MIT1002_01688 | | Ribosomal RNA large subunit methyltransferase I | insig. | 38 | 26 |
| Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS05890 | | class I SAM-dependent rRNA methyltransferase | sig. | 32 | 47 |
| Phocaeicola dorei CL03T12C01 | ABI39_RS18215 | | class I SAM-dependent rRNA methyltransferase | insig. | 32 | 47 |
| Rhodanobacter denitrificans MT42 | LRK55_RS14315 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | cofit | 30 | 56 |
| Rhodanobacter denitrificans FW104-10B01 | LRK54_RS14600 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | insig. | 30 | 56 |
| Kangiella aquimarina DSM 16071 | B158DRAFT_2229 | | 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) | insig. | 28 | 52 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS00350 | | class I SAM-dependent rRNA methyltransferase | insig. | 31 | 44 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS22040 | | class I SAM-dependent rRNA methyltransferase | insig. | 28 | 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF3239 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | insig. | 32 | 50 |
| Acinetobacter radioresistens SK82 | MPMX26_01097 | | Ribosomal RNA large subunit methyltransferase K/L | cofit | 26 | 63 |
| Bacteroides stercoris CC31F | HMPREF1181_RS05925 | | class I SAM-dependent rRNA methyltransferase | insig. | 31 | 47 |
| Shewanella loihica PV-4 | Shew_1812 | | 23S rRNA m(2)G2445 methyltransferase (RefSeq) | sig. | 28 | 62 |
| Shewanella oneidensis MR-1 | SO1851 | | conserved hypothetical protein (NCBI ptt file) | strong | 27 | 77 |
| Shewanella sp. ANA-3 | Shewana3_1601 | rlmL | 23S rRNA m(2)G2445 methyltransferase (RefSeq) | strong | 29 | 57 |
| Paraburkholderia graminis OAS925 | ABIE53_000425 | | 23S rRNA (cytosine1962-C5)-methyltransferase | insig. | 30 | 44 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02203 | | SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase | insig. | 30 | 44 |
| Escherichia coli BL21 | ECD_00952 | | 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent | insig. | 31 | 50 |
| Escherichia coli ECRC98 | JDDGAC_08890 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | cofit | 31 | 50 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02718 | | Ribosomal RNA large subunit methyltransferase K/L | insig. | 31 | 50 |
| Escherichia coli BW25113 | b0948 | ycbY | predicted methyltransferase (NCBI) | strong | 31 | 50 |
| Alteromonas macleodii MIT1002 | MIT1002_02036 | | Ribosomal RNA large subunit methyltransferase K/L | cofit | 31 | 48 |
| Burkholderia phytofirmans PsJN | BPHYT_RS01650 | | 23S rRNA methyltransferase | insig. | 30 | 44 |
| Serratia liquefaciens MT49 | IAI46_08820 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | insig. | 27 | 61 |
| Parabacteroides merdae CL09T00C40 | HMPREF1078_RS13685 | | class I SAM-dependent rRNA methyltransferase | cofit | 34 | 36 |
| Escherichia fergusonii Becca | EFB2_03123 | | Ribosomal RNA large subunit methyltransferase K/L | insig. | 31 | 50 |
| Escherichia coli ECOR27 | NOLOHH_21835 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | insig. | 31 | 50 |
| Escherichia coli ECRC100 | OKFHMN_05280 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | insig. | 31 | 50 |
| Escherichia coli ECRC101 | MCAODC_24670 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | cofit | 31 | 50 |
| Escherichia coli ECRC102 | NIAGMN_03000 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | insig. | 31 | 50 |
| Escherichia coli ECRC62 | BNILDI_20000 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | cofit | 31 | 50 |
| Escherichia coli ECRC99 | KEDOAH_22455 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | no data | 31 | 50 |
| Escherichia coli Nissle 1917 | ECOLIN_RS04980 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | insig. | 31 | 50 |
| Pseudomonas putida KT2440 | PP_4306 | | conserved protein of unknown function | insig. | 32 | 38 |
| Pectobacterium carotovorum WPP14 | HER17_RS11990 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | cofit | 24 | 82 |
| Pseudomonas stutzeri RCH2 | Psest_1949 | | Predicted N6-adenine-specific DNA methylase | insig. | 34 | 45 |
| Rahnella sp. WP5 | EX31_RS17990 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | insig. | 33 | 27 |
| Escherichia coli ECOR38 | HEPCGN_23240 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | cofit | 31 | 50 |
| Marinobacter adhaerens HP15 | HP15_1379 | | RNA methylase | insig. | 30 | 43 |
| Pseudomonas fluorescens FW300-N2C3 | AO356_26175 | | methyltransferase | insig. | 27 | 55 |
| Methanococcus maripaludis JJ | MMJJ_RS07620 | | class I SAM-dependent rRNA methyltransferase | insig. | 30 | 42 |
| Rahnella sp. WP5 | EX31_RS18080 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | insig. | 23 | 79 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3350 | | Predicted SAM-dependent methyltransferases | insig. | 30 | 54 |
| Escherichia coli BL21 | ECD_00971 | | 23S rRNA m(5)C1962 methyltransferase, SAM-dependent | insig. | 33 | 27 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02699 | | Ribosomal RNA large subunit methyltransferase I | insig. | 33 | 27 |
| Escherichia coli BW25113 | b0967 | yccW | predicted methyltransferase (RefSeq) | sig. | 33 | 27 |
| Escherichia coli ECOR27 | NOLOHH_21740 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | insig. | 33 | 27 |
| Escherichia coli ECOR38 | HEPCGN_23335 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | cofit | 33 | 27 |
| Escherichia coli ECRC100 | OKFHMN_05185 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | insig. | 33 | 27 |
| Escherichia coli ECRC101 | MCAODC_24575 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | insig. | 33 | 27 |
| Escherichia coli ECRC102 | NIAGMN_02905 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | insig. | 33 | 27 |
| Escherichia coli ECRC62 | BNILDI_19905 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | cofit | 33 | 27 |
| Escherichia coli ECRC98 | JDDGAC_08795 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | cofit | 33 | 27 |
| Escherichia coli ECRC99 | KEDOAH_22550 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | no data | 33 | 27 |
| Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1108 | | Methyltransferase (EC 2.1.1.-) | sig. | 27 | 55 |
| Pantoea sp. MT58 | IAI47_12690 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | insig. | 26 | 69 |
| Vibrio cholerae E7946 ATCC 55056 | CSW01_07480 | | ribosomal RNA large subunit methyltransferase K/L | insig. | 30 | 38 |
| Dickeya dianthicola 67-19 | HGI48_RS12910 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | insig. | 25 | 80 |
| Dickeya dianthicola ME23 | DZA65_RS13375 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | insig. | 25 | 80 |
| Ralstonia solanacearum PSI07 | RPSI07_RS23695 | | class I SAM-dependent rRNA methyltransferase | insig. | 35 | 32 |
| Ralstonia solanacearum GMI1000 | RS_RS00255 | | class I SAM-dependent rRNA methyltransferase | insig. | 35 | 32 |
| Escherichia fergusonii Becca | EFB2_03104 | | Ribosomal RNA large subunit methyltransferase I | insig. | 33 | 27 |
| Escherichia coli Nissle 1917 | ECOLIN_RS05085 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | no data | 33 | 27 |
| Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS19815 | | RlmI/RlmK family 23S rRNA methyltransferase | insig. | 34 | 36 |
| Shewanella amazonensis SB2B | Sama_1600 | rlmL | 23S rRNA m(2)G2445 methyltransferase (RefSeq) | strong | 24 | 76 |
| Enterobacter asburiae PDN3 | EX28DRAFT_1976 | | Predicted SAM-dependent methyltransferases | insig. | 32 | 27 |
| Enterobacter sp. TBS_079 | MPMX20_01617 | | Ribosomal RNA large subunit methyltransferase I | insig. | 32 | 27 |
| Pantoea sp. MT58 | IAI47_12595 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | insig. | 35 | 27 |
| Ralstonia sp. UNC404CL21Col | ABZR87_RS05070 | | class I SAM-dependent rRNA methyltransferase | insig. | 34 | 32 |
| Klebsiella michiganensis M5al | BWI76_RS10045 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase | sig. | 33 | 27 |
| Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3335.1 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | insig. | 31 | 43 |
| Ralstonia solanacearum IBSBF1503 | RALBFv3_RS09670 | | class I SAM-dependent rRNA methyltransferase | strong | 34 | 32 |
| Ralstonia solanacearum UW163 | UW163_RS03910 | | class I SAM-dependent rRNA methyltransferase | insig. | 34 | 32 |
| Pseudomonas sp. RS175 | PFR28_01847 | | Ribosomal RNA large subunit methyltransferase K/L | insig. | 25 | 55 |
| Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4250 | | Methyltransferase (EC 2.1.1.-) | insig. | 25 | 55 |
| Erwinia tracheiphila SCR3 | LU632_RS10090 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | insig. | 35 | 27 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF3258 | | LSU m5C1962 methyltransferase RlmI | insig. | 33 | 27 |
| Enterobacter sp. TBS_079 | MPMX20_01599 | | Ribosomal RNA large subunit methyltransferase K/L | insig. | 30 | 50 |
| Enterobacter asburiae PDN3 | EX28DRAFT_1995 | | Predicted N6-adenine-specific DNA methylase | insig. | 30 | 50 |
| Klebsiella michiganensis M5al | BWI76_RS09925 | | 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase | insig. | 28 | 50 |
| Pseudomonas syringae pv. syringae B728a | Psyr_2337 | | conserved hypothetical protein | insig. | 31 | 42 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2337 | | conserved hypothetical protein | insig. | 31 | 42 |
| Serratia liquefaciens MT49 | IAI46_08925 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | insig. | 30 | 27 |
| Methanococcus maripaludis S2 | MMP_RS06735 | | class I SAM-dependent rRNA methyltransferase | sig. | 28 | 42 |
| Erwinia tracheiphila SCR3 | LU632_RS09965 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | cofit | 26 | 60 |