| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Agrobacterium fabrum C58 | Atu5063 | | RpiR family transcriptional regulator | insig. | 100 | 100 |
| o | Sinorhizobium meliloti 1021 | SMa0520 | | RpiR family transcriptional regulator | sig. | 34 | 89 |
| o | Herbaspirillum seropedicae SmR1 | HSERO_RS09180 | | transcriptional regulator | insig. | 27 | 94 |
| | Rhizobium sp. OAE497 | ABIE40_RS12055 | | MurR/RpiR family transcriptional regulator | sig. | 25 | 88 |
| | Serratia liquefaciens MT49 | IAI46_12855 | | MurR/RpiR family transcriptional regulator | insig. | 21 | 87 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2466 | | Sialic acid utilization regulator, RpiR family | insig. | 28 | 70 |
| | Enterobacter sp. TBS_079 | MPMX20_03432 | | HTH-type transcriptional regulator MurR | insig. | 25 | 68 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_28415 | | MurR/RpiR family transcriptional regulator | insig. | 23 | 88 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_0085 | | transcriptional regulator, RpiR family | insig. | 25 | 68 |
| | Escherichia coli BL21 | ECD_02455 | | putative DNA-binding transcriptional regulator | insig. | 26 | 70 |
| | Escherichia coli ECOR27 | NOLOHH_13125 | yfhH | MurR/RpiR family transcriptional regulator | insig. | 26 | 70 |
| | Escherichia coli ECRC100 | OKFHMN_21450 | yfhH | MurR/RpiR family transcriptional regulator | cofit | 26 | 70 |
| | Escherichia coli ECRC101 | MCAODC_11980 | yfhH | MurR/RpiR family transcriptional regulator | insig. | 26 | 70 |
| | Escherichia coli ECRC102 | NIAGMN_19220 | yfhH | MurR/RpiR family transcriptional regulator | insig. | 26 | 70 |
| | Escherichia coli ECRC62 | BNILDI_11925 | yfhH | MurR/RpiR family transcriptional regulator | cofit | 26 | 70 |
| | Escherichia coli ECRC98 | JDDGAC_25115 | yfhH | MurR/RpiR family transcriptional regulator | insig. | 26 | 70 |
| | Escherichia coli ECRC99 | KEDOAH_06770 | yfhH | MurR/RpiR family transcriptional regulator | no data | 26 | 70 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_01146 | | HTH-type transcriptional regulator MurR | insig. | 26 | 70 |
| | Escherichia coli BW25113 | b2561 | yfhH | orf, hypothetical protein (VIMSS) | insig. | 26 | 70 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS14095 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 86 |
| | Dickeya dianthicola 67-19 | HGI48_RS16735 | | SIS domain-containing protein | cofit | 32 | 57 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS17585 | | DNA-binding protein | no data | 27 | 84 |
| | Fusobacterium nucleatum SB010 | HUW76_09985 | | MurR/RpiR family transcriptional regulator | cofit | 21 | 87 |
| | Escherichia fergusonii Becca | EFB2_01335 | | HTH-type transcriptional regulator MurR | insig. | 25 | 70 |
| | Escherichia coli ECOR38 | HEPCGN_20595 | yfhH | MurR/RpiR family transcriptional regulator | insig. | 25 | 70 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS14490 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 70 |
| | Sinorhizobium meliloti 1021 | SMc01602 | | hypothetical protein | insig. | 22 | 79 |
| | Agrobacterium fabrum C58 | Atu2145 | | transcriptional regulator, RpiR family | sig. | 22 | 90 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c27130 | | putative HTH-type transcriptional regulator | strong | 23 | 88 |
| | Dickeya dianthicola ME23 | DZA65_RS17825 | | MurR/RpiR family transcriptional regulator | insig. | 32 | 57 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_22280 | | MurR/RpiR family transcriptional regulator HpxU | insig. | 30 | 79 |
| | Paraburkholderia graminis OAS925 | ABIE53_003518 | | RpiR family carbohydrate utilization transcriptional regulator | strong | 28 | 70 |
| o | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_02995 | | MurR/RpiR family transcriptional regulator | cofit | 25 | 84 |
| o | Erwinia tracheiphila SCR3 | LU632_RS18000 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 84 |
| | Enterobacter sp. TBS_079 | MPMX20_01667 | | hypothetical protein | sig. | 29 | 79 |
| | Pantoea sp. MT58 | IAI47_03370 | | MurR/RpiR family transcriptional regulator | insig. | 27 | 68 |
| | Klebsiella michiganensis M5al | BWI76_RS21290 | | DNA-binding transcriptional regulator | sig. | 24 | 74 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS05080 | | MurR/RpiR family transcriptional regulator | sig. | 25 | 76 |
| | Pseudomonas sp. DMC3 | GFF992 | | hypothetical protein | cofit | 28 | 75 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_25880 | | transcriptional repressor QapR | strong | 27 | 85 |
| | Pseudomonas sp. S08-1 | OH686_23395 | | hypothetical protein | strong | 26 | 68 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS13890 | | RpiR family transcriptional regulator | strong | 25 | 76 |
| | Pseudomonas sp. SVBP6 | COO64_RS08420 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 75 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_27890 | | RpiR family transcriptional regulator | strong | 27 | 75 |
| | Rahnella sp. WP5 | EX31_RS07425 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 74 |
| | Rahnella sp. WP5 | EX31_RS21125 | | MurR/RpiR family transcriptional regulator | insig. | 29 | 64 |
| | Pectobacterium carotovorum WPP14 | HER17_RS04535 | | MurR/RpiR family transcriptional regulator | insig. | 29 | 62 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS18180 | | MurR/RpiR family transcriptional regulator | insig. | 28 | 74 |
| | Ralstonia solanacearum UW163 | UW163_RS20950 | | MurR/RpiR family transcriptional regulator | insig. | 28 | 74 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS16740 | | transcriptional regulator | strong | 27 | 70 |
| | Rahnella sp. WP5 | EX31_RS21865 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 70 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_2858 | | transcriptional regulator, RpiR family | insig. | 26 | 68 |
| | Sinorhizobium meliloti 1021 | SMc04363 | | hypothetical protein | insig. | 23 | 74 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS25830 | qapR;inference=COORDINATES | transcriptional repressor QapR | strong | 27 | 85 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS58260 | qapR;inference=COORDINATES | transcriptional repressor QapR | strong | 27 | 85 |
| | Erwinia amylovora T8 | OLJFJH_10280 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 82 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04463 | | transcriptional regulator, RpiR family | strong | 25 | 76 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04279 | | transcriptional regulator, RpiR family | sig. | 29 | 70 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5851 | | Transcriptional regulator, RpiR family | insig. | 26 | 75 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS11695 | | MurR/RpiR family transcriptional regulator | insig. | 26 | 73 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS15550 | | transcriptional regulator | sig. | 30 | 70 |
| | Pseudomonas segetis P6 | ACVTMO_RS19695 | | MurR/RpiR family transcriptional regulator | cofit | 28 | 55 |
| | Paraburkholderia graminis OAS925 | ABIE53_002944 | | DNA-binding MurR/RpiR family transcriptional regulator | strong | 25 | 76 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS13500 | | MurR/RpiR family transcriptional regulator | insig. | 28 | 70 |
| | Shewanella loihica PV-4 | Shew_2049 | | DNA-binding transcriptional regulator HexR (RefSeq) | strong | 22 | 86 |
| | Rahnella sp. WP5 | EX31_RS09220 | | MurR/RpiR family transcriptional regulator | insig. | 27 | 74 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS12005 | | transcriptional regulator | insig. | 26 | 74 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_2055 | | Probable transcriptional regulator | strong | 24 | 74 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS03320 | | bifunctional transcriptional regulator/glucokinase | strong | 28 | 70 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS00230 | | MurR/RpiR family transcriptional regulator | insig. | 26 | 76 |
| | Ralstonia solanacearum UW163 | UW163_RS13560 | | MurR/RpiR family transcriptional regulator | no data | 26 | 76 |
| | Variovorax sp. SCN45 | GFF2285 | | Transcriptional regulator, RpiR family | insig. | 22 | 87 |
| | Bosea sp. OAE506 | ABIE41_RS16720 | | MurR/RpiR family transcriptional regulator | insig. | 26 | 74 |
| | Enterobacter sp. TBS_079 | MPMX20_03648 | | putative HTH-type transcriptional regulator YbbH | sig. | 24 | 68 |
| | Ralstonia solanacearum GMI1000 | RS_RS22855 | | MurR/RpiR family transcriptional regulator | insig. | 28 | 74 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS08725 | | transcriptional regulator | sig. | 28 | 74 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_01085 | | MurR/RpiR family transcriptional regulator | insig. | 23 | 76 |
| | Serratia liquefaciens MT49 | IAI46_19515 | | MurR/RpiR family transcriptional regulator | insig. | 23 | 84 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4395 | | Transcriptional regulator RpiR in protein degradation cluster | no data | 23 | 75 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS26890 | | RpiR family transcriptional regulator | insig. | 23 | 90 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2175 | | Transcriptional regulator, RpiR family | strong | 26 | 75 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3704 | | Transcriptional regulator RpiR in protein degradation cluster | strong | 23 | 75 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS14800 | | MurR/RpiR family transcriptional regulator | cofit | 23 | 61 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS26925 | | MurR/RpiR family transcriptional regulator | sig. | 31 | 43 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS05455 | | MurR/RpiR family transcriptional regulator | insig. | 26 | 75 |
| | Pantoea sp. MT58 | IAI47_04910 | | MurR/RpiR family transcriptional regulator | strong | 23 | 61 |
| | Ralstonia solanacearum GMI1000 | RS_RS08795 | | MurR/RpiR family transcriptional regulator | sig. | 22 | 86 |
| | Klebsiella michiganensis M5al | BWI76_RS00065 | | MurR/RpiR family transcriptional regulator | strong | 25 | 61 |
| | Azospirillum brasilense Sp245 | AZOBR_RS30190 | | transcriptional regulator | insig. | 24 | 85 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS33775 | | MurR/RpiR family transcriptional regulator | strong | 22 | 85 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3275 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | sig. | 20 | 76 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3275 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | insig. | 20 | 76 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_01500 | | RpiR family transcriptional regulator | strong | 26 | 75 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF3305 | | Sialic acid utilization regulator, RpiR family | insig. | 23 | 74 |
| | Pseudomonas sp. RS175 | PFR28_01273 | | hypothetical protein | cofit | 26 | 74 |
| | Variovorax sp. OAS795 | ABID97_RS15420 | | MurR/RpiR family transcriptional regulator | insig. | 26 | 73 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02617 | | transcriptional regulator, RpiR family | insig. | 26 | 85 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS19110 | | MurR/RpiR family transcriptional regulator | sig. | 25 | 75 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_27995 | | RpiR family transcriptional regulator | strong | 24 | 68 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1364 | | Phosphogluconate repressor HexR, RpiR family | insig. | 24 | 92 |