Homologs of BT3326 from Bacteroides thetaiotaomicron VPI-5482

putative nifR3 family TIM-barrel enzyme with dihydrouridine synthase domain (NCBI ptt file)
SEED: Probable transcriptional regulator

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Bacteroides thetaiotaomicron VPI-5482 BT3326 putative nifR3 family TIM-barrel enzyme with dihydrouridine synthase domain (NCBI ptt file) sig. 100 100
o Bacteroides ovatus ATCC 8483 BACOVA_02001 dihydrouridine synthase (Dus) insig. 76 100
o Bacteroides stercoris CC31F HMPREF1181_RS02310 tRNA-dihydrouridine synthase family protein insig. 62 99
o Phocaeicola dorei CL03T12C01 ABI39_RS05210 tRNA-dihydrouridine synthase family protein insig. 58 97
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS00475 tRNA-dihydrouridine synthase family protein insig. 52 98
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS11695 tRNA-dihydrouridine synthase family protein insig. 57 97
  Pseudomonas sp. RS175 PFR28_02828 tRNA-dihydrouridine(16) synthase insig. 31 74
  Pseudomonas stutzeri RCH2 Psest_2595 tRNA-dihydrouridine synthase insig. 31 72
  Pseudomonas simiae WCS417 PS417_18630 tRNA-dihydrouridine synthase C insig. 31 75
  Pseudomonas fluorescens SBW25 PFLU_RS20610 tRNA-dihydrouridine synthase family protein cofit 30 75
  Pseudomonas fluorescens SBW25-INTG PFLU_RS20610 tRNA-dihydrouridine synthase family protein insig. 30 75
  Pseudomonas fluorescens FW300-N2E3 AO353_20600 tRNA-dihydrouridine synthase C insig. 30 74
  Pseudomonas fluorescens FW300-N2C3 AO356_21380 tRNA-dihydrouridine synthase C insig. 30 75
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_58 tRNA-dihydrouridine synthase C (EC 1.-.-.-) insig. 30 74
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_19 tRNA-dihydrouridine synthase C (EC 1.-.-.-) insig. 30 74
  Pseudomonas sp. S08-1 OH686_04505 tRNA-dihydrouridine(16) synthase cofit 30 74
  Pseudomonas syringae pv. syringae B728a Psyr_1979 tRNA-U20a,U20b-dihydrouridine synthase insig. 31 72
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1979 tRNA-U20a,U20b-dihydrouridine synthase insig. 31 72
  Alteromonas macleodii MIT1002 MIT1002_01411 putative tRNA-dihydrouridine synthase insig. 29 76
  Pseudomonas putida KT2440 PP_1981 tRNA-dihydrouridine synthase C insig. 29 74
  Alteromonas macleodii MIT1002 MIT1002_03957 putative tRNA-dihydrouridine synthase sig. 26 78
  Vibrio cholerae E7946 ATCC 55056 CSW01_01495 tRNA dihydrouridine synthase DusB insig. 28 78
  Desulfovibrio vulgaris Miyazaki F DvMF_2019 dihydrouridine synthase DuS (RefSeq) insig. 27 86
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3952 tRNA-dihydrouridine synthase C (EC 1.-.-.-) insig. 29 68
  Sinorhizobium meliloti 1021 SMc01041 NIFR3-like protein strong 28 71
  Azospirillum sp. SherDot2 MPMX19_01110 tRNA-dihydrouridine synthase B insig. 28 81
  Kangiella aquimarina DSM 16071 B158DRAFT_0164 tRNA-U20-dihydrouridine synthase strong 24 92
  Shewanella amazonensis SB2B Sama_3225 tRNA-dihydrouridine synthase B (RefSeq) strong 23 97
  Enterobacter asburiae PDN3 EX28DRAFT_3313 putative TIM-barrel protein, nifR3 family insig. 24 78
  Phaeobacter inhibens DSM 17395 PGA1_c14770 tRNA-dihydrouridine synthase DusB strong 28 75
  Rahnella sp. WP5 EX31_RS12180 tRNA dihydrouridine synthase DusB cofit 22 96
  Klebsiella michiganensis M5al BWI76_RS25565 tRNA dihydrouridine synthase DusB no data 27 52
  Vibrio cholerae E7946 ATCC 55056 CSW01_05615 tRNA dihydrouridine(16) synthase DusC insig. 30 56
  Dechlorosoma suillum PS Dsui_2334 tRNA-dihydrouridine synthase insig. 29 73
  Escherichia coli ECOR38 HEPCGN_22850 dusC tRNA dihydrouridine(16) synthase DusC cofit 27 77
  Agrobacterium fabrum C58 Atu1444 nitrogen regulation protein strong 30 54
  Enterobacter sp. TBS_079 MPMX20_04169 tRNA-dihydrouridine synthase B strong 28 52
  Fusobacterium nucleatum SB010 HUW76_04330 tRNA-dihydrouridine synthase cofit 24 73
  Shewanella oneidensis MR-1 SO0394 conserved hypothetical protein (NCBI ptt file) strong 26 79
  Shewanella sp. ANA-3 Shewana3_0399 nifR3 family TIM-barrel protein (RefSeq) strong 25 79
  Rhodopseudomonas palustris CGA009 TX73_013410 tRNA dihydrouridine synthase DusB insig. 27 82
  Shewanella loihica PV-4 Shew_0330 nifR3 family TIM-barrel protein (RefSeq) strong 26 73
  Desulfovibrio vulgaris Hildenborough JW710 DVU0054 dihydrouridine synthase family protein (TIGR) insig. 26 89
  Synechococcus elongatus PCC 7942 Synpcc7942_0283 Dihydrouridine synthase TIM-barrel protein nifR3 insig. 30 70
  Azospirillum brasilense Sp245 AZOBR_RS14420 tRNA-dihydrouridine synthase sig. 27 83
  Pectobacterium carotovorum WPP14 HER17_RS20235 tRNA dihydrouridine synthase DusB cofit 22 96
  Rhizobium sp. OAE497 ABIE40_RS09080 tRNA dihydrouridine synthase DusB insig. 32 44
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2124 tRNA dihydrouridine synthase B (EC 1.-.-.-) insig. 24 73
  Escherichia fergusonii Becca EFB2_01716 tRNA-dihydrouridine(16) synthase insig. 26 77
  Escherichia coli ECOR27 NOLOHH_15155 dusC tRNA dihydrouridine(16) synthase DusC insig. 26 77
  Escherichia coli ECRC62 BNILDI_14105 dusC tRNA dihydrouridine(16) synthase DusC insig. 26 77
  Escherichia coli Nissle 1917 ECOLIN_RS12530 tRNA dihydrouridine(16) synthase DusC no data 26 77
  Escherichia coli Nissle 1917 ECOLIN_RS25475 tRNA dihydrouridine(16) synthase DusC no data 26 77
  Dickeya dianthicola 67-19 HGI48_RS01295 tRNA dihydrouridine synthase DusB insig. 23 70
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0140 tRNA-U20-dihydrouridine synthase strong 30 46
  Escherichia coli BL21 ECD_02069 tRNA-dihydrouridine synthase C insig. 26 77
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01571 tRNA-dihydrouridine(16) synthase insig. 26 77
  Escherichia coli BW25113 b2140 dusC tRNA-dihydrouridine synthase C (NCBI) insig. 26 77
  Ralstonia solanacearum PSI07 RPSI07_RS16005 tRNA-dihydrouridine synthase C sig. 24 86
  Marinobacter adhaerens HP15 HP15_1398 tRNA-dihydrouridine synthase C insig. 28 74
  Shewanella loihica PV-4 Shew_2242 dihydrouridine synthase, DuS (RefSeq) insig. 26 75
  Escherichia coli ECRC101 OKFHMN_23615 dusC tRNA dihydrouridine(16) synthase DusC insig. 26 77
  Escherichia coli ECRC101 MCAODC_14665 dusC tRNA dihydrouridine(16) synthase DusC insig. 26 77
  Escherichia coli ECRC102 NIAGMN_21380 dusC tRNA dihydrouridine(16) synthase DusC sig. 26 77
  Escherichia coli ECRC98 JDDGAC_27570 dusC tRNA dihydrouridine(16) synthase DusC no data 26 77
  Escherichia coli ECRC99 KEDOAH_04570 dusC tRNA dihydrouridine(16) synthase DusC no data 26 77
  Dickeya dianthicola ME23 DZA65_RS01355 tRNA dihydrouridine synthase DusB cofit 23 70
  Pantoea sp. MT58 IAI47_02385 tRNA dihydrouridine synthase DusB sig. 26 73
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3804 tRNA-dihydrouridine synthase C (EC 1.-.-.-) insig. 25 96
  Dickeya dadantii 3937 DDA3937_RS01375 tRNA dihydrouridine synthase DusB strong 24 70
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3560 tRNA-dihydrouridine synthase C (EC 1.-.-.-) insig. 28 72
  Escherichia coli BL21 ECD_03118 tRNA-dihydrouridine synthase B strong 27 52
  Escherichia fergusonii Becca EFB2_00564 tRNA-dihydrouridine synthase B cofit 27 52
  Escherichia coli ECOR27 NOLOHH_09470 dusB tRNA dihydrouridine synthase DusB strong 27 52
  Escherichia coli ECOR38 HEPCGN_16505 dusB tRNA dihydrouridine synthase DusB strong 27 52
  Escherichia coli ECRC101 OKFHMN_17685 dusB tRNA dihydrouridine synthase DusB strong 27 52
  Escherichia coli ECRC101 MCAODC_08205 dusB tRNA dihydrouridine synthase DusB strong 27 52
  Escherichia coli ECRC102 NIAGMN_15445 dusB tRNA dihydrouridine synthase DusB strong 27 52
  Escherichia coli ECRC62 BNILDI_02050 dusB tRNA dihydrouridine synthase DusB sig. 27 52
  Escherichia coli ECRC98 JDDGAC_21310 dusB tRNA dihydrouridine synthase DusB no data 27 52
  Escherichia coli ECRC99 KEDOAH_10465 dusB tRNA dihydrouridine synthase DusB no data 27 52
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00445 putative tRNA-dihydrouridine synthase sig. 27 52
  Escherichia coli Nissle 1917 ECOLIN_RS18725 tRNA dihydrouridine synthase DusB strong 27 52
  Escherichia coli BW25113 b3260 dusB tRNA-dihydrouridine synthase B (NCBI) strong 27 52
  Serratia liquefaciens MT49 IAI46_22775 tRNA dihydrouridine synthase DusB insig. 23 70
  Burkholderia phytofirmans PsJN BPHYT_RS09165 tRNA-dihydrouridine synthase C insig. 24 78
  Ralstonia solanacearum GMI1000 RS_RS08240 tRNA-dihydrouridine synthase C insig. 24 75
  Pseudomonas sp. S08-1 OH686_07610 tRNA-dihydrouridine synthase DusB sig. 26 72
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1531 putative TIM-barrel protein, nifR3 family strong 27 74
  Magnetospirillum magneticum AMB-1 AMB_RS11940 tRNA dihydrouridine synthase DusB insig. 29 46
  Dickeya dianthicola ME23 DZA65_RS09115 tRNA dihydrouridine(16) synthase DusC insig. 25 77
  Rhodospirillum rubrum S1H Rru_A1676 Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI) sig. 27 71
  Variovorax sp. OAS795 ABID97_RS24735 tRNA dihydrouridine synthase DusB insig. 27 70
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04810 tRNA dihydrouridine synthase DusB cofit 26 73
  Cupriavidus basilensis FW507-4G11 RR42_RS07625 dihydrouridine synthase insig. 25 86
  Dickeya dianthicola 67-19 HGI48_RS08810 tRNA dihydrouridine(16) synthase DusC insig. 25 77
  Enterobacter asburiae PDN3 EX28DRAFT_0417 tRNA-dihydrouridine synthase insig. 25 77
  Klebsiella michiganensis M5al BWI76_RS19565 tRNA dihydrouridine(16) synthase DusC insig. 30 56
  Pantoea sp. MT58 IAI47_13430 tRNA dihydrouridine(16) synthase DusC insig. 28 55
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS22340 tRNA dihydrouridine synthase DusB insig. 27 78