Homologs of yfiA-3 from Shewanella oneidensis MR-1

yfiA-3: ribosomal subunit interface protein (NCBI ptt file)
SEED: Ribosome hibernation protein YhbH
KEGG: putative sigma-54 modulation protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) sig. 100 100
o Shewanella sp. ANA-3 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) strong 99 100
o Shewanella amazonensis SB2B Sama_3089 ribosomal subunit interface protein (RefSeq) strong 86 100
o Shewanella loihica PV-4 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) strong 84 100
o Alteromonas macleodii MIT1002 MIT1002_00826 Ribosome hibernation promoting factor strong 73 100
o Kangiella aquimarina DSM 16071 B158DRAFT_2079 ribosomal subunit interface protein insig. 68 100
o Pectobacterium carotovorum WPP14 HER17_RS20065 ribosome hibernation promoting factor cofit 64 100
o Serratia liquefaciens MT49 IAI46_22475 ribosome hibernation promoting factor insig. 63 100
o Marinobacter adhaerens HP15 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA cofit 63 96
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1081 Ribosome hibernation protein YhbH sig. 60 96
o Pseudomonas fluorescens FW300-N2C3 AO356_07040 hypothetical protein insig. 60 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3268 Ribosome hibernation protein YhbH sig. 60 96
o Pseudomonas sp. S08-1 OH686_08550 Ribosome hibernation promoting factor Hpf cofit 59 96
o Rahnella sp. WP5 EX31_RS12395 ribosome hibernation promoting factor cofit 59 100
o Pseudomonas simiae WCS417 PS417_04340 ribosome hibernation promoting factor HPF strong 58 96
o Pseudomonas stutzeri RCH2 Psest_3314 ribosomal subunit interface protein sig. 57 100
o Dickeya dadantii 3937 DDA3937_RS01525 ribosome hibernation promoting factor sig. 60 100
o Pantoea sp. MT58 IAI47_17190 ribosome hibernation promoting factor insig. 60 100
o Pseudomonas putida KT2440 PP_0951 Ribosome hibernation promoting factor strong 58 96
o Pseudomonas fluorescens FW300-N2E3 AO353_05185 hypothetical protein sig. 59 96
o Dickeya dianthicola 67-19 HGI48_RS01440 ribosome hibernation promoting factor insig. 59 100
o Dickeya dianthicola ME23 DZA65_RS01505 ribosome hibernation promoting factor insig. 59 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_5015 Ribosome hibernation protein YhbH insig. 57 96
o Pseudomonas syringae pv. syringae B728a Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 59 96
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 59 96
o Klebsiella michiganensis M5al BWI76_RS25270 ribosome hibernation promoting factor sig. 56 100
o Erwinia tracheiphila SCR3 LU632_RS21285 hpf ribosome hibernation promoting factor insig. 57 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2947 Ribosome hibernation protein YhbH cofit 56 100
o Pseudomonas sp. RS175 PFR28_00172 Ribosome hibernation promoting factor sig. 58 96
o Enterobacter sp. TBS_079 MPMX20_04109 Ribosome hibernation promoting factor sig. 57 100
o Enterobacter asburiae PDN3 EX28DRAFT_3257 ribosomal subunit interface protein cofit 55 100
o Escherichia coli BL21 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers cofit 54 100
o Escherichia fergusonii Becca EFB2_00620 Ribosome hibernation promoting factor insig. 54 100
o Escherichia coli ECOR27 NOLOHH_09735 Ribosome hibernation promoting factor cofit 54 100
o Escherichia coli ECOR38 HEPCGN_16810 Ribosome hibernation promoting factor cofit 54 100
o Escherichia coli ECRC101 OKFHMN_17935 Ribosome hibernation promoting factor insig. 54 100
o Escherichia coli ECRC101 MCAODC_08455 Ribosome hibernation promoting factor insig. 54 100
o Escherichia coli ECRC102 NIAGMN_15695 Ribosome hibernation promoting factor insig. 54 100
o Escherichia coli ECRC62 BNILDI_01800 Ribosome hibernation promoting factor sig. 54 100
o Escherichia coli ECRC98 JDDGAC_21560 Ribosome hibernation promoting factor no data 54 100
o Escherichia coli ECRC99 KEDOAH_10215 Ribosome hibernation promoting factor no data 54 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00497 Ribosome hibernation promoting factor sig. 54 100
o Escherichia coli Nissle 1917 ECOLIN_RS18430 ribosome hibernation promoting factor insig. 54 100
o Escherichia coli BW25113 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) sig. 54 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_12820 ribosome hibernation promoting factor insig. 55 100
o Variovorax sp. SCN45 GFF7293 Ribosome hibernation promoting factor Hpf cofit 48 100
o Pseudomonas fluorescens SBW25 PFLU_RS04395 ribosome-associated translation inhibitor RaiA cofit 53 96
o Pseudomonas fluorescens SBW25-INTG PFLU_RS04395 ribosome-associated translation inhibitor RaiA strong 53 96
o Variovorax sp. OAS795 ABID97_RS04490 ribosome-associated translation inhibitor RaiA insig. 48 100
o Acidovorax sp. GW101-3H11 Ac3H11_681 Ribosome hibernation protein YhbH sig. 48 100
o Dechlorosoma suillum PS Dsui_0703 ribosomal subunit interface protein strong 46 100
o Ralstonia solanacearum PSI07 RPSI07_RS22135 ribosomal subunit interface protein strong 49 100
o Ralstonia sp. UNC404CL21Col ABZR87_RS07055 ribosome-associated translation inhibitor RaiA strong 49 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS11165 ribosomal subunit interface protein strong 48 100
o Ralstonia solanacearum UW163 UW163_RS02415 ribosomal subunit interface protein sig. 48 100
o Cupriavidus basilensis FW507-4G11 RR42_RS02080 ribosome hibernation promoting factor sig. 46 100
o Ralstonia solanacearum GMI1000 RS_RS02015 ribosomal subunit interface protein strong 48 100
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2612 Ribosome hibernation protein YhbH strong 44 100
o Paraburkholderia graminis OAS925 ABIE53_000717 putative sigma-54 modulation protein strong 47 100
o Burkholderia phytofirmans PsJN BPHYT_RS02900 ribosome hibernation promoting factor sig. 45 100
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P insig. 45 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS01750 ribosome-associated translation inhibitor RaiA insig. 46 100
o Lysobacter sp. OAE881 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA cofit 47 100
o Castellaniella sp019104865 MT123 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA cofit 41 96
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1661.1 Ribosome hibernation protein YhbH insig. 45 100
o Rhodanobacter sp. FW510-T8 OKGIIK_02260 raiA ribosomal subunit interface protein strong 40 97
o Rhodanobacter denitrificans MT42 LRK55_RS12570 ribosome-associated translation inhibitor RaiA insig. 39 98
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS12870 ribosome-associated translation inhibitor RaiA strong 39 98
  Pectobacterium carotovorum WPP14 HER17_RS05390 ribosome-associated translation inhibitor RaiA cofit 38 92
  Pantoea sp. MT58 IAI47_04415 ribosome-associated translation inhibitor RaiA insig. 37 94
  Serratia liquefaciens MT49 IAI46_03975 ribosome-associated translation inhibitor RaiA insig. 36 94
  Erwinia tracheiphila SCR3 LU632_RS16955 raiA ribosome-associated translation inhibitor RaiA insig. 37 94
  Dickeya dadantii 3937 DDA3937_RS16120 ribosome-associated translation inhibitor RaiA insig. 35 94
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4180 Ribosome hibernation protein YfiA insig. 37 94
  Klebsiella michiganensis M5al BWI76_RS21460 translation inhibitor protein RaiA insig. 36 94
  Enterobacter asburiae PDN3 EX28DRAFT_2697 ribosomal subunit interface protein cofit 36 94
  Enterobacter sp. TBS_079 MPMX20_03465 Ribosome-associated inhibitor A insig. 36 94
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA sig. 38 98
  Escherichia coli BL21 ECD_02486 cold shock protein associated with 30S ribosomal subunit insig. 37 92
  Escherichia fergusonii Becca EFB2_01294 Ribosome-associated inhibitor A insig. 37 92
  Escherichia coli ECOR27 NOLOHH_12910 raiA ribosome-associated translation inhibitor RaiA cofit 37 92
  Escherichia coli ECOR38 HEPCGN_20355 raiA ribosome-associated translation inhibitor RaiA cofit 37 92
  Escherichia coli ECRC101 OKFHMN_21235 raiA ribosome-associated translation inhibitor RaiA insig. 37 92
  Escherichia coli ECRC101 MCAODC_11765 raiA ribosome-associated translation inhibitor RaiA insig. 37 92
  Escherichia coli ECRC102 NIAGMN_19005 raiA ribosome-associated translation inhibitor RaiA insig. 37 92
  Escherichia coli ECRC62 BNILDI_11715 raiA ribosome-associated translation inhibitor RaiA insig. 37 92
  Escherichia coli ECRC98 JDDGAC_24900 raiA ribosome-associated translation inhibitor RaiA no data 37 92
  Escherichia coli ECRC99 KEDOAH_06985 raiA ribosome-associated translation inhibitor RaiA no data 37 92
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01110 Ribosome-associated inhibitor A insig. 37 92
  Escherichia coli Nissle 1917 ECOLIN_RS14690 ribosome-associated translation inhibitor RaiA no data 37 92
  Escherichia coli BW25113 b2597 yfiA cold shock protein associated with 30S ribosomal subunit (NCBI) strong 37 92
  Dickeya dianthicola 67-19 HGI48_RS16245 ribosome-associated translation inhibitor RaiA insig. 34 94
  Dickeya dianthicola ME23 DZA65_RS17340 ribosome-associated translation inhibitor RaiA insig. 34 94
  Rahnella sp. WP5 EX31_RS07580 ribosome-associated translation inhibitor RaiA insig. 33 96
  Shewanella sp. ANA-3 Shewana3_1133 SSU ribosomal protein S30P / sigma 54 modulation protein (RefSeq) strong 35 87
  Shewanella oneidensis MR-1 SO3422 yfiA-2 ribosomal subunit interface protein (NCBI ptt file) sig. 35 87
o Acinetobacter radioresistens SK82 MPMX26_02591 Ribosome hibernation promoting factor no data 37 95
  Shewanella oneidensis MR-1 SO3403 yfiA-1 ribosomal subunit interface protein (NCBI ptt file) no data 36 95
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS09440 ribosome-associated translation inhibitor RaiA strong 33 97
o Phocaeicola dorei CL03T12C01 ABI39_RS03830 ribosome-associated translation inhibitor RaiA strong 33 97