Conservation of cofitness between Xcc-8004.5020.1 and Xcc-8004.3283.1 in Xanthomonas campestris pv. campestris strain 8004

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 1.0 Xcc-8004.3283.1 Phosphoserine aminotransferase (EC 2.6.1.52) 0.89 9
Lysobacter sp. OAE881 0.57 ABIE51_RS01815 shikimate dehydrogenase 0.79 ABIE51_RS12150 3-phosphoserine/phosphohydroxythreonine transaminase 0.69 35
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS14985 shikimate dehydrogenase 0.63 ABZR86_RS02220 3-phosphoserine/phosphohydroxythreonine transaminase 0.96 29
Rhodanobacter denitrificans MT42 0.49 LRK55_RS08360 shikimate dehydrogenase 0.63 LRK55_RS00140 3-phosphoserine/phosphohydroxythreonine transaminase low > 63
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS08595 shikimate dehydrogenase 0.63 LRK54_RS00400 3-phosphoserine/phosphohydroxythreonine transaminase low > 59
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_15365 aroE shikimate dehydrogenase 0.63 OKGIIK_06910 serC 3-phosphoserine/phosphohydroxythreonine transaminase low > 52
Shewanella oneidensis MR-1 0.40 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.42 SO2410 serC phosphoserine aminotransferase (NCBI ptt file) — —
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS00120 shikimate dehydrogenase 0.48 PFLU_RS08090 3-phosphoserine/phosphohydroxythreonine transaminase — —
Pseudomonas fluorescens SBW25 0.39 PFLU_RS00120 shikimate dehydrogenase 0.48 PFLU_RS08090 3-phosphoserine/phosphohydroxythreonine transaminase — —
Pseudomonas simiae WCS417 0.39 PS417_00125 shikimate dehydrogenase 0.48 PS417_08120 MFS transporter — —
Pseudomonas sp. RS175 0.39 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.47 PFR28_00906 Phosphoserine aminotransferase — —
Serratia liquefaciens MT49 0.39 IAI46_23240 shikimate dehydrogenase 0.50 IAI46_08635 3-phosphoserine/phosphohydroxythreonine transaminase 0.62 33
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_10670 shikimate dehydrogenase 0.48 AO353_02075 3-phosphoserine/phosphohydroxythreonine aminotransferase 0.79 4
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_00280 shikimate dehydrogenase 0.47 CSW01_05875 3-phosphoserine/phosphohydroxythreonine transaminase — —
Shewanella loihica PV-4 0.38 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.43 Shew_1950 phosphoserine aminotransferase (RefSeq) — —
Shewanella sp. ANA-3 0.38 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.42 Shewana3_1973 phosphoserine aminotransferase (RefSeq) — —
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_11315 shikimate dehydrogenase 0.48 AO356_03470 3-phosphoserine/phosphohydroxythreonine aminotransferase — —
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.36 Pf1N1B4_351 Phosphoserine aminotransferase (EC 2.6.1.52) — —
Dechlorosoma suillum PS 0.38 Dsui_0443 shikimate 5-dehydrogenase 0.48 Dsui_1939 phosphoserine aminotransferase — —
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.47 PfGW456L13_2175 Phosphoserine aminotransferase (EC 2.6.1.52) — —
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.48 Pf6N2E2_2521 Phosphoserine aminotransferase (EC 2.6.1.52) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_0025 shikimate dehydrogenase 0.48 Psyr_3646 phosphoserine aminotransferase apoenzyme — —
Rahnella sp. WP5 0.37 EX31_RS15950 shikimate dehydrogenase 0.50 EX31_RS18255 3-phosphoserine/phosphohydroxythreonine transaminase — —
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_0025 shikimate dehydrogenase 0.48 Psyr_3646 phosphoserine aminotransferase apoenzyme — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS01990 shikimate 5-dehydrogenase 0.48 HSERO_RS18435 MFS transporter — —
Pseudomonas sp. S08-1 0.37 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.49 OH686_20865 phosphoserine transaminase — —
Pantoea sp. MT58 0.37 IAI47_02315 shikimate dehydrogenase 0.51 IAI47_12865 3-phosphoserine/phosphohydroxythreonine transaminase — —
Pseudomonas putida KT2440 0.37 PP_0074 shikimate 5-dehydrogenase 0.49 PP_1768 phosphoserine aminotransferase — —
Dickeya dadantii 3937 0.36 DDA3937_RS19100 shikimate dehydrogenase 0.53 DDA3937_RS09670 3-phosphoserine/phosphohydroxythreonine transaminase — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11300 shikimate dehydrogenase 0.47 RPSI07_RS19715 3-phosphoserine/phosphohydroxythreonine transaminase 0.71 19
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.50 BWI76_RS09755 phosphoserine transaminase 0.72 56
Shewanella amazonensis SB2B 0.36 Sama_0052 shikimate dehydrogenase (RefSeq) 0.43 Sama_1732 phosphoserine aminotransferase (RefSeq) — —
Escherichia coli BL21 0.36 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.50 ECD_00911 3-phosphoserine/phosphohydroxythreonine aminotransferase low > 61
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS27130 shikimate dehydrogenase 0.49 QEN71_RS04065 3-phosphoserine/phosphohydroxythreonine transaminase 0.67 58
Escherichia coli BW25113 0.36 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.50 b0907 serC phosphoserine aminotransferase (NCBI) 0.90 37
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.50 OHPLBJKB_02761 Phosphoserine aminotransferase — —
Dickeya dianthicola 67-19 0.36 HGI48_RS19190 shikimate dehydrogenase 0.53 HGI48_RS09680 3-phosphoserine/phosphohydroxythreonine transaminase — —
Escherichia coli ECOR38 0.36 HEPCGN_16385 aroE shikimate dehydrogenase 0.51 HEPCGN_23030 serC 3-phosphoserine/phosphohydroxythreonine transaminase 0.83 21
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.49 H281DRAFT_03926 phosphoserine aminotransferase apoenzyme — —
Escherichia fergusonii Becca 0.36 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.51 EFB2_03157 Phosphoserine aminotransferase low > 86
Escherichia coli ECRC102 0.36 NIAGMN_15325 aroE shikimate dehydrogenase 0.50 NIAGMN_03210 serC 3-phosphoserine/phosphohydroxythreonine transaminase — —
Acinetobacter radioresistens SK82 0.36 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.48 MPMX26_02219 Phosphoserine aminotransferase — —
Escherichia coli Nissle 1917 0.36 ECOLIN_RS18840 shikimate dehydrogenase 0.51 ECOLIN_RS04805 3-phosphoserine/phosphohydroxythreonine transaminase 0.79 15
Escherichia coli ECRC100 0.36 OKFHMN_17565 aroE shikimate dehydrogenase 0.50 OKFHMN_05490 serC 3-phosphoserine/phosphohydroxythreonine transaminase 0.93 50
Ralstonia solanacearum UW163 0.36 UW163_RS07680 shikimate dehydrogenase 0.47 UW163_RS16055 3-phosphoserine/phosphohydroxythreonine transaminase — —
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01605 shikimate dehydrogenase 0.48 ABZR87_RS09445 3-phosphoserine/phosphohydroxythreonine transaminase 0.66 7
Escherichia coli ECRC99 0.36 KEDOAH_10585 aroE shikimate dehydrogenase 0.50 KEDOAH_22245 serC 3-phosphoserine/phosphohydroxythreonine transaminase — —
Escherichia coli ECRC98 0.36 JDDGAC_21185 aroE shikimate dehydrogenase 0.50 JDDGAC_09100 serC 3-phosphoserine/phosphohydroxythreonine transaminase 0.84 22
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05945 shikimate dehydrogenase 0.47 RALBFv3_RS13755 3-phosphoserine/phosphohydroxythreonine transaminase 0.45 30
Escherichia coli ECRC101 0.36 MCAODC_08085 aroE shikimate dehydrogenase 0.50 MCAODC_24880 serC 3-phosphoserine/phosphohydroxythreonine transaminase 0.80 40
Dickeya dianthicola ME23 0.36 DZA65_RS20315 shikimate dehydrogenase 0.52 DZA65_RS09990 3-phosphoserine/phosphohydroxythreonine transaminase — —
Ralstonia solanacearum GMI1000 0.35 RS_RS13890 shikimate dehydrogenase 0.47 RS_RS04490 3-phosphoserine/phosphohydroxythreonine aminotransferase 0.56 11
Enterobacter asburiae PDN3 0.35 EX28DRAFT_0046 shikimate dehydrogenase 0.48 EX28DRAFT_2028 phosphoserine aminotransferase apoenzyme (EC 2.6.1.52) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.51 GFF3664 Phosphoserine aminotransferase (EC 2.6.1.52) low > 78
Castellaniella sp019104865 MT123 0.35 ABCV34_RS11620 shikimate dehydrogenase 0.48 ABCV34_RS07115 3-phosphoserine/phosphohydroxythreonine transaminase — —
Escherichia coli ECRC62 0.35 BNILDI_02165 aroE shikimate dehydrogenase 0.50 BNILDI_20305 serC 3-phosphoserine/phosphohydroxythreonine transaminase 0.96 7
Escherichia coli ECOR27 0.35 NOLOHH_09355 aroE shikimate dehydrogenase 0.50 NOLOHH_22050 serC 3-phosphoserine/phosphohydroxythreonine transaminase 0.91 9
Pectobacterium carotovorum WPP14 0.35 HER17_RS02250 shikimate dehydrogenase 0.52 HER17_RS12290 3-phosphoserine/phosphohydroxythreonine transaminase — —
Enterobacter sp. TBS_079 0.35 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.50 MPMX20_01566 Phosphoserine aminotransferase 0.89 13
Pseudomonas stutzeri RCH2 0.35 Psest_0029 shikimate 5-dehydrogenase 0.49 Psest_1983 phosphoserine aminotransferase — —
Paraburkholderia graminis OAS925 0.35 ABIE53_003560 shikimate dehydrogenase 0.41 ABIE53_003159 phosphoserine aminotransferase — —
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS16975 shikimate 5-dehydrogenase 0.49 BPHYT_RS14915 phosphoserine aminotransferase 0.74 8
Erwinia tracheiphila SCR3 0.34 LU632_RS22445 aroE shikimate dehydrogenase 0.52 LU632_RS09790 serC 3-phosphoserine/phosphohydroxythreonine transaminase — —
Marinobacter adhaerens HP15 0.34 HP15_3750 shikimate dehydrogenase 0.47 HP15_1361 phosphoserine aminotransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.48 GFF5342 Phosphoserine aminotransferase (EC 2.6.1.52) — —
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_0259 shikimate 5-dehydrogenase 0.46 B158DRAFT_2322 phosphoserine aminotransferase apoenzyme (EC 2.6.1.52) — —
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS17645 shikimate dehydrogenase 0.45 RR42_RS04455 MFS transporter — —
Acidovorax sp. GW101-3H11 0.29 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.49 Ac3H11_2573 Phosphoserine aminotransferase (EC 2.6.1.52) — —
Alteromonas macleodii MIT1002 0.26 MIT1002_00029 Shikimate dehydrogenase 0.49 MIT1002_02192 Phosphoserine aminotransferase — —
Variovorax sp. OAS795 0.25 ABID97_RS06300 shikimate dehydrogenase 0.46 ABID97_RS09520 3-phosphoserine/phosphohydroxythreonine transaminase — —
Variovorax sp. SCN45 0.25 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.49 GFF6183 Phosphoserine aminotransferase (EC 2.6.1.52) — —
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05065 putative shikimate dehydrogenase 0.36 BACOVA_04029 phosphoserine transaminase — —

Not shown: 23 genomes with orthologs for Xcc-8004.5020.1 only; 8 genomes with orthologs for Xcc-8004.3283.1 only