Conservation of cofitness between TX73_019540 and TX73_014770 in Rhodopseudomonas palustris CGA009

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_019540 FAD-dependent oxidoreductase 1.0 TX73_014770 beta-N-acetylhexosaminidase 0.54 12
Rhizobium sp. OAE497 0.54 ABIE40_RS03380 FAD-binding oxidoreductase 0.54 ABIE40_RS08445 beta-N-acetylhexosaminidase low > 107
Sinorhizobium meliloti 1021 0.53 SMc00797 oxidoreductase 0.50 SMc02071 hydrolase glycosidase low > 103
Ralstonia solanacearum PSI07 0.53 RPSI07_RS07505 FAD-binding oxidoreductase 0.20 RPSI07_RS18950 beta-N-acetylhexosaminidase low > 81
Paraburkholderia bryophila 376MFSha3.1 0.53 H281DRAFT_03160 D-amino-acid dehydrogenase 0.22 H281DRAFT_04367 beta-N-acetylhexosaminidase — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS16195 FAD-binding oxidoreductase 0.20 RALBFv3_RS14510 beta-N-acetylhexosaminidase low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS16930 FAD-binding oxidoreductase 0.20 UW163_RS11975 beta-N-acetylhexosaminidase — —
Paraburkholderia graminis OAS925 0.52 ABIE53_004136 D-amino-acid dehydrogenase 0.22 ABIE53_003031 beta-N-acetylhexosaminidase low > 113
Pseudomonas putida KT2440 0.52 PP_3596 D-lysine oxidase 0.22 PP_2145 beta-N-acetylglucosaminidase low > 96
Bosea sp. OAE506 0.51 ABIE41_RS13575 FAD-binding oxidoreductase 0.54 ABIE41_RS14975 beta-N-acetylhexosaminidase low > 77
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS10270 D-amino acid dehydrogenase 0.21 BPHYT_RS14345 beta-hexosaminidase low > 109
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS12475 FAD-binding oxidoreductase 0.20 QEN71_RS04635 beta-N-acetylhexosaminidase low > 153
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS23145 FAD-binding oxidoreductase 0.20 ABZR87_RS10230 beta-N-acetylhexosaminidase low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF267 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.18 GFF3351 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 90
Ralstonia solanacearum GMI1000 0.23 RS_RS02525 FAD-dependent oxidoreductase 0.20 RS_RS05290 beta-N-acetylhexosaminidase low > 80
Shewanella amazonensis SB2B 0.23 Sama_1533 D-amino-acid dehydrogenase (RefSeq) 0.20 Sama_1326 beta-hexosaminidase (RefSeq) low > 62
Castellaniella sp019104865 MT123 0.21 ABCV34_RS10190 FAD-dependent oxidoreductase 0.23 ABCV34_RS06985 beta-N-acetylhexosaminidase low > 48
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS16215 FAD-binding oxidoreductase 0.20 PFLU_RS07695 beta-N-acetylhexosaminidase low > 109
Pseudomonas fluorescens SBW25 0.21 PFLU_RS16215 FAD-binding oxidoreductase 0.20 PFLU_RS07695 beta-N-acetylhexosaminidase 0.41 77
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_3586 D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster 0.20 PfGW456L13_4031 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 87
Agrobacterium fabrum C58 0.20 Atu3364 D-amino acid dehydrogenase 0.53 Atu1709 glycosyl hydrolase low > 89
Pseudomonas simiae WCS417 0.19 PS417_14320 FAD-dependent oxidoreductase 0.21 PS417_07620 beta-hexosaminidase low > 88
Rhodospirillum rubrum S1H 0.19 Rru_A2064 FAD dependent oxidoreductase (NCBI) 0.47 Rru_A1777 Beta-N-acetylhexosaminidase (NCBI) low > 58
Azospirillum sp. SherDot2 0.18 MPMX19_04536 D-amino acid dehydrogenase 1 0.51 MPMX19_04326 Beta-hexosaminidase low > 112
Phaeobacter inhibens DSM 17395 0.18 PGA1_c05140 D-amino acid dehydrogenase small subunit 0.39 PGA1_c11160 putative beta-hexosaminidase low > 62
Cupriavidus basilensis FW507-4G11 0.18 RR42_RS09075 amino acid dehydrogenase 0.21 RR42_RS14015 beta-hexosaminidase low > 128
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_04065 D-amino acid dehydrogenase small subunit 0.19 CSW01_03620 beta-hexosaminidase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.17 Xcc-8004.1916.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.21 Xcc-8004.3663.1 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 74
Pseudomonas fluorescens FW300-N2E2 0.16 Pf6N2E2_4391 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.21 Pf6N2E2_2281 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 103
Rhodanobacter sp. FW510-T8 0.16 OKGIIK_06665 dadA D-amino acid dehydrogenase small subunit 0.19 OKGIIK_07830 nagZ beta-N-acetylhexosaminidase — —
Pseudomonas fluorescens FW300-N2C3 0.16 AO356_12620 amino acid dehydrogenase 0.21 AO356_02285 beta-hexosaminidase low > 104
Pseudomonas sp. S08-1 0.16 OH686_13685 D-amino acid dehydrogenase 0.20 OH686_21975 beta-N-acetylglucosaminidase low > 80
Rhodanobacter denitrificans FW104-10B01 0.16 LRK54_RS00590 D-amino acid dehydrogenase 0.22 LRK54_RS17010 beta-N-acetylhexosaminidase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.16 A4249_RS08770 D-amino acid dehydrogenase 0.50 A4249_RS09405 beta-N-acetylhexosaminidase low > 48
Pseudomonas sp. RS175 0.16 PFR28_04399 D-amino acid dehydrogenase 1 0.21 PFR28_01119 Beta-hexosaminidase low > 88
Rhodanobacter denitrificans MT42 0.16 LRK55_RS00360 D-amino acid dehydrogenase 0.22 LRK55_RS16725 beta-N-acetylhexosaminidase — —
Pseudomonas fluorescens FW300-N2E3 0.16 AO353_09155 amino acid dehydrogenase 0.21 AO353_00455 beta-hexosaminidase low > 101
Pseudomonas stutzeri RCH2 0.16 Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.20 Psest_2643 Beta-glucosidase-related glycosidases low > 67
Pseudomonas fluorescens FW300-N1B4 0.16 Pf1N1B4_2144 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.21 Pf1N1B4_3912 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) — —
Pectobacterium carotovorum WPP14 0.15 HER17_RS11170 D-amino acid dehydrogenase 0.20 HER17_RS08725 beta-N-acetylhexosaminidase low > 75
Pseudomonas syringae pv. syringae B728a 0.15 Psyr_0235 D-amino acid dehydrogenase small subunit 0.22 Psyr_3281 Glycoside hydrolase, family 3, N-terminal low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.15 Psyr_0235 D-amino acid dehydrogenase small subunit 0.22 Psyr_3281 Glycoside hydrolase, family 3, N-terminal — —
Dinoroseobacter shibae DFL-12 0.14 Dshi_0558 D-amino-acid dehydrogenase (RefSeq) 0.43 Dshi_1726 Beta-N-acetylhexosaminidase (RefSeq) low > 64
Dechlorosoma suillum PS 0.14 Dsui_0501 glycine/D-amino acid oxidase, deaminating 0.20 Dsui_2465 beta-glucosidase-like glycosyl hydrolase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.14 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.22 GFF3390 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 78
Rahnella sp. WP5 0.14 EX31_RS10485 D-amino acid dehydrogenase 0.21 EX31_RS24500 beta-N-acetylhexosaminidase low > 89
Dickeya dianthicola 67-19 0.14 HGI48_RS11195 D-amino acid dehydrogenase 0.19 HGI48_RS13115 beta-N-acetylhexosaminidase low > 71
Dickeya dadantii 3937 0.14 DDA3937_RS11170 D-amino acid dehydrogenase 0.20 DDA3937_RS13050 beta-N-acetylhexosaminidase low > 74
Klebsiella michiganensis M5al 0.14 BWI76_RS17735 D-amino acid dehydrogenase small subunit 0.23 BWI76_RS11165 beta-N-acetylhexosaminidase low > 92
Dickeya dianthicola ME23 0.14 DZA65_RS11540 D-amino acid dehydrogenase 0.19 DZA65_RS13585 beta-N-acetylhexosaminidase low > 75
Enterobacter asburiae PDN3 0.13 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) 0.22 EX28DRAFT_1823 Beta-glucosidase-related glycosidases low > 76
Acidovorax sp. GW101-3H11 0.13 Ac3H11_1644 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.19 Ac3H11_1561 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 79
Escherichia coli ECOR38 0.13 HEPCGN_24750 dadA D-amino acid dehydrogenase 0.23 HEPCGN_23980 nagZ beta-N-acetylhexosaminidase low > 87
Escherichia coli ECOR27 0.13 NOLOHH_20725 dadA D-amino acid dehydrogenase 0.22 NOLOHH_21035 nagZ beta-N-acetylhexosaminidase low > 75
Escherichia fergusonii Becca 0.13 EFB2_02743 D-amino acid dehydrogenase 0.22 EFB2_02868 Beta-hexosaminidase low > 86
Pantoea sp. MT58 0.13 IAI47_08890 D-amino acid dehydrogenase 0.21 IAI47_11995 beta-N-acetylhexosaminidase low > 76
Escherichia coli ECRC98 0.13 JDDGAC_06220 dadA D-amino acid dehydrogenase 0.23 JDDGAC_07165 nagZ beta-N-acetylhexosaminidase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.13 OHPLBJKB_02500 D-amino acid dehydrogenase 0.22 OHPLBJKB_02559 Beta-hexosaminidase low > 73
Escherichia coli ECRC62 0.13 BNILDI_18890 dadA D-amino acid dehydrogenase 0.22 BNILDI_19195 nagZ beta-N-acetylhexosaminidase low > 75
Escherichia coli ECRC102 0.13 NIAGMN_27930 dadA D-amino acid dehydrogenase 0.23 NIAGMN_24325 nagZ beta-N-acetylhexosaminidase — —
Escherichia coli ECRC99 0.13 KEDOAH_25305 dadA D-amino acid dehydrogenase 0.23 KEDOAH_24250 nagZ beta-N-acetylhexosaminidase — —
Escherichia coli BL21 0.13 ECD_01164 D-amino acid dehydrogenase 0.22 ECD_01103 beta N-acetyl-glucosaminidase low > 61
Escherichia coli Nissle 1917 0.13 ECOLIN_RS07185 D-amino acid dehydrogenase 0.22 ECOLIN_RS06390 beta-N-acetylhexosaminidase — —
Escherichia coli BW25113 0.13 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) 0.22 b1107 nagZ beta-hexosaminidase (NCBI) low > 76
Escherichia coli ECRC100 0.13 OKFHMN_28290 dadA D-amino acid dehydrogenase 0.23 OKFHMN_03505 nagZ beta-N-acetylhexosaminidase — —
Escherichia coli ECRC101 0.13 MCAODC_21880 dadA D-amino acid dehydrogenase 0.23 MCAODC_22865 nagZ beta-N-acetylhexosaminidase low > 87
Magnetospirillum magneticum AMB-1 0.13 AMB_RS14080 D-amino-acid dehydrogenase 0.53 AMB_RS12720 beta-N-acetylhexosaminidase — —
Enterobacter sp. TBS_079 0.13 MPMX20_02699 D-amino acid dehydrogenase 0.22 MPMX20_01788 Beta-hexosaminidase low > 85
Erwinia tracheiphila SCR3 0.13 LU632_RS13070 D-amino acid dehydrogenase 0.24 LU632_RS14755 nagZ beta-N-acetylhexosaminidase low > 74
Acinetobacter radioresistens SK82 0.12 MPMX26_01248 D-amino acid dehydrogenase 0.23 MPMX26_00420 Beta-hexosaminidase low > 36
Serratia liquefaciens MT49 0.12 IAI46_14460 D-amino acid dehydrogenase 0.20 IAI46_09900 beta-N-acetylhexosaminidase low > 86
Dyella japonica UNC79MFTsu3.2 0.11 ABZR86_RS08930 FAD-dependent oxidoreductase 0.20 ABZR86_RS07110 beta-N-acetylhexosaminidase — —
Sphingomonas koreensis DSMZ 15582 0.11 Ga0059261_3351 Glycine/D-amino acid oxidases (deaminating) 0.44 Ga0059261_3481 Beta-glucosidase-related glycosidases low > 68

Not shown: 8 genomes with orthologs for TX73_019540 only; 4 genomes with orthologs for TX73_014770 only