| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sinorhizobium meliloti 1021 | 1.0 | SMc00647 | | ribosomal large subunit pseudouridine synthase | 1.0 | SMc04235 | | tRNA-dihydrouridine synthase A | 0.82 | 17 |
| Agrobacterium fabrum C58 | 0.79 | Atu2443 | | ribosomal large subunit pseudouridine synthase, RluD subfamily | 0.56 | Atu1515 | | hypothetical protein | — | — |
| Rhizobium sp. OAE497 | 0.73 | ABIE40_RS14790 | | RluA family pseudouridine synthase | 0.58 | ABIE40_RS10895 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.74 | 1 |
| Bosea sp. OAE506 | 0.49 | ABIE41_RS05635 | | RluA family pseudouridine synthase | 0.44 | ABIE41_RS21285 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.32 | 9 |
| Rhodopseudomonas palustris CGA009 | 0.49 | TX73_001905 | | RluA family pseudouridine synthase | 0.40 | TX73_010150 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 86 |
| Azospirillum sp. SherDot2 | 0.46 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | 0.44 | MPMX19_00670 | | tRNA-dihydrouridine(20/20a) synthase | low | > 112 |
| Rhodospirillum rubrum S1H | 0.41 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | 0.41 | Rru_A1621 | | Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) | 0.85 | 4 |
| Phaeobacter inhibens DSM 17395 | 0.41 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | 0.43 | PGA1_c19230 | | tRNA-dihydrouridine synthase A | 0.32 | 12 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.39 | A4249_RS10060 | | RluA family pseudouridine synthase | 0.47 | A4249_RS10515 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 48 |
| Caulobacter crescentus NA1000 | 0.39 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | 0.47 | CCNA_01364 | | NIFR3-like protein | 0.49 | 31 |
| Caulobacter crescentus NA1000 Δfur | 0.39 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | 0.47 | CCNA_01364 | | NIFR3-like protein | low | > 67 |
| Dinoroseobacter shibae DFL-12 | 0.36 | Dshi_2610 | | pseudouridine synthase, RluA family (RefSeq) | 0.43 | Dshi_2512 | | TIM-barrel protein, yjbN family (RefSeq) | low | > 64 |
| Synechococcus elongatus PCC 7942 | 0.35 | Synpcc7942_1112 | | ribosomal large subunit pseudouridine synthase D | 0.41 | Synpcc7942_2066 | | tRNA-dihydrouridine synthase A | low | > 38 |
| Rhodanobacter denitrificans FW104-10B01 | 0.34 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.43 | LRK54_RS05995 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.64 | 7 |
| Rhodanobacter denitrificans MT42 | 0.34 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.43 | LRK55_RS05750 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.75 | 9 |
| Dyella japonica UNC79MFTsu3.2 | 0.34 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.43 | ABZR86_RS18350 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.57 | 6 |
| Rhodanobacter sp. FW510-T8 | 0.34 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.42 | OKGIIK_00625 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | low | > 52 |
| Kangiella aquimarina DSM 16071 | 0.34 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | 0.39 | B158DRAFT_2018 | | tRNA dihydrouridine synthase A | low | > 40 |
| Shewanella loihica PV-4 | 0.33 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | 0.42 | Shew_0536 | | tRNA-dihydrouridine synthase A (RefSeq) | low | > 60 |
| Marinobacter adhaerens HP15 | 0.33 | HP15_527 | | pseudouridine synthase, RluA family | 0.38 | HP15_2240 | | tRNA-dihydrouridine synthase, TIM-barrel, YjbN | low | > 73 |
| Pseudomonas fluorescens GW456-L13 | 0.33 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.36 | PfGW456L13_3987 | | tRNA dihydrouridine synthase A | — | — |
| Pseudomonas putida KT2440 | 0.33 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.41 | PP_2169 | | tRNA-dihydrouridine synthase A | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.32 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.39 | Pf1N1B4_57 | | tRNA dihydrouridine synthase A | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.32 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.39 | Pf6N2E2_2257 | | tRNA dihydrouridine synthase A | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.32 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.38 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.32 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.38 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 109 |
| Pseudomonas simiae WCS417 | 0.32 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | 0.38 | PS417_07740 | | tRNA-dihydrouridine synthase A | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.39 | AO356_02170 | | tRNA-dihydrouridine synthase A | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.32 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | 0.39 | AO353_00295 | | tRNA-dihydrouridine synthase A | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.32 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.41 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | low | > 86 |
| Pseudomonas sp. RS175 | 0.32 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | 0.39 | PFR28_01143 | | tRNA-dihydrouridine(20/20a) synthase | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.32 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.41 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | low | > 86 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.32 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.40 | Xcc-8004.5010.1 | | tRNA dihydrouridine synthase A | low | > 74 |
| Pseudomonas sp. S08-1 | 0.32 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | 0.39 | OH686_22745 | | tRNA-dihydrouridine(20/20a) synthase | low | > 80 |
| Alteromonas macleodii MIT1002 | 0.32 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | 0.39 | MIT1002_03387 | | putative tRNA-dihydrouridine synthase | low | > 70 |
| Vibrio cholerae E7946 ATCC 55056 | 0.31 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | 0.39 | CSW01_01985 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 62 |
| Shewanella sp. ANA-3 | 0.31 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | 0.44 | Shewana3_0718 | | tRNA-dihydrouridine synthase A (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.31 | Sama_2605 | | pseudouridylate synthase (RefSeq) | 0.43 | Sama_3055 | | tRNA-dihydrouridine synthase A (RefSeq) | — | — |
| Erwinia tracheiphila SCR3 | 0.31 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.37 | LU632_RS23765 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | low | > 74 |
| Dickeya dadantii 3937 | 0.31 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | DDA3937_RS17480 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 74 |
| Lysobacter sp. OAE881 | 0.31 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.37 | ABIE51_RS03925 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.73 | 4 |
| Dickeya dianthicola 67-19 | 0.31 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | HGI48_RS17540 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 71 |
| Dickeya dianthicola ME23 | 0.31 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | DZA65_RS18620 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 75 |
| Herbaspirillum seropedicae SmR1 | 0.31 | HSERO_RS15070 | | ribosomal large subunit pseudouridine synthase D | 0.37 | HSERO_RS17905 | | tRNA-dihydrouridine synthase A | low | > 78 |
| Ralstonia solanacearum GMI1000 | 0.31 | RS_RS08205 | | RluA family pseudouridine synthase | 0.37 | RS_RS06510 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 80 |
| Pantoea sp. MT58 | 0.30 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | IAI47_17865 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.30 | ABZR87_RS13315 | | RluA family pseudouridine synthase | 0.37 | ABZR87_RS11300 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 80 |
| Escherichia coli ECRC101 | 0.30 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | OKFHMN_12945 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | — | — |
| Escherichia coli Nissle 1917 | 0.30 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | ECOLIN_RS23355 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 52 |
| Escherichia coli BL21 | 0.30 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.40 | ECD_03921 | | tRNA-dihydrouridine synthase A | 0.72 | 19 |
| Escherichia coli ECRC62 | 0.30 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | BNILDI_06330 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | — | — |
| Escherichia coli ECOR27 | 0.30 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | NOLOHH_05195 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | low | > 57 |
| Escherichia coli BW25113 | 0.30 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | 0.40 | b4049 | dusA | tRNA-dihydrouridine synthase A (RefSeq) | — | — |
| Escherichia coli ECRC101 | 0.30 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.41 | MCAODC_03455 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.30 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | 0.40 | OHPLBJKB_03994 | | tRNA-dihydrouridine(20/20a) synthase | low | > 73 |
| Escherichia coli ECRC102 | 0.30 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | NIAGMN_10790 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | — | — |
| Escherichia coli ECRC98 | 0.30 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | JDDGAC_16580 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | — | — |
| Escherichia coli ECRC99 | 0.30 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | KEDOAH_15205 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | — | — |
| Escherichia fergusonii Becca | 0.30 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | 0.40 | EFB2_04556 | | tRNA-dihydrouridine(20/20a) synthase | low | > 86 |
| Escherichia coli ECOR38 | 0.30 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | HEPCGN_11560 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | low | > 85 |
| Ralstonia solanacearum IBSBF1503 | 0.30 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | 0.38 | RALBFv3_RS15730 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 76 |
| Ralstonia solanacearum UW163 | 0.30 | UW163_RS14830 | | RluA family pseudouridine synthase | 0.38 | UW163_RS13175 | | tRNA dihydrouridine(20/20a) synthase DusA | — | — |
| Rahnella sp. WP5 | 0.30 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | EX31_RS11865 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.71 | 29 |
| Ralstonia solanacearum PSI07 | 0.30 | RPSI07_RS15970 | | RluA family pseudouridine synthase | 0.38 | RPSI07_RS17630 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 81 |
| Pectobacterium carotovorum WPP14 | 0.29 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.41 | HER17_RS03680 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 75 |
| Klebsiella michiganensis M5al | 0.29 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | 0.41 | BWI76_RS01900 | | tRNA-dihydrouridine synthase A | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.29 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.40 | GFF1418 | | tRNA dihydrouridine synthase A (EC 1.-.-.-) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.29 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | 0.41 | EX28DRAFT_4263 | | tRNA dihydrouridine synthase A | low | > 76 |
| Serratia liquefaciens MT49 | 0.29 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | IAI46_22970 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 86 |
| Enterobacter sp. TBS_079 | 0.29 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.42 | MPMX20_00265 | | tRNA-dihydrouridine(20/20a) synthase | low | > 85 |
| Acidovorax sp. GW101-3H11 | 0.28 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.39 | Ac3H11_2288 | | tRNA dihydrouridine synthase A | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.28 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.37 | GFF4791 | | tRNA dihydrouridine synthase A | low | > 90 |
| Acinetobacter radioresistens SK82 | 0.27 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | 0.37 | MPMX26_00482 | | tRNA-dihydrouridine(20/20a) synthase | low | > 36 |
| Variovorax sp. SCN45 | 0.27 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | 0.37 | GFF928 | | tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) | 0.75 | 35 |
| Variovorax sp. OAS795 | 0.26 | ABID97_RS14190 | | RluA family pseudouridine synthase | 0.38 | ABID97_RS13915 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.38 | 19 |
| Castellaniella sp019104865 MT123 | 0.25 | ABCV34_RS01885 | | RluA family pseudouridine synthase | 0.33 | ABCV34_RS04335 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.96 | 14 |
Not shown: 17 genomes with orthologs for SMc00647 only; 8 genomes with orthologs for SMc04235 only