Conservation of cofitness between RS_RS02865 and RS_RS06155 in Ralstonia solanacearum GMI1000

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Ralstonia solanacearum GMI1000 1.0 RS_RS02865 pyruvate kinase 1.0 RS_RS06155 ribonuclease R 0.68 20
Ralstonia solanacearum IBSBF1503 0.95 RALBFv3_RS12180 pyruvate kinase 0.97 RALBFv3_RS15345 ribonuclease R low > 76
Ralstonia solanacearum UW163 0.95 UW163_RS01430 pyruvate kinase 0.97 UW163_RS12810 ribonuclease R — —
Ralstonia solanacearum PSI07 0.95 RPSI07_RS21150 pyruvate kinase 0.98 RPSI07_RS18030 ribonuclease R low > 81
Ralstonia sp. UNC404CL21Col 0.93 ABZR87_RS08070 pyruvate kinase 0.91 ABZR87_RS10985 ribonuclease R low > 80
Cupriavidus basilensis FW507-4G11 0.85 RR42_RS03210 pyruvate kinase 0.79 RR42_RS13065 ribonuclease R 0.39 20
Paraburkholderia graminis OAS925 0.77 ABIE53_003427 pyruvate kinase 0.64 ABIE53_001940 ribonuclease R low > 113
Paraburkholderia bryophila 376MFSha3.1 0.77 H281DRAFT_04189 pyruvate kinase 0.64 H281DRAFT_00712 RNAse R low > 103
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS16265 hypothetical protein 0.64 BPHYT_RS08455 ribonuclease R low > 109
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS02430 pyruvate kinase 0.65 QEN71_RS22925 ribonuclease R low > 153
Herbaspirillum seropedicae SmR1 0.75 HSERO_RS03350 hypothetical protein 0.64 HSERO_RS09290 ribonuclease R 0.31 5
Variovorax sp. SCN45 0.69 GFF5504 Pyruvate kinase (EC 2.7.1.40) 0.50 GFF399 3'-to-5' exoribonuclease RNase R low > 127
Variovorax sp. OAS795 0.69 ABID97_RS01755 pyruvate kinase 0.50 ABID97_RS17200 ribonuclease R 0.39 72
Acidovorax sp. GW101-3H11 0.69 Ac3H11_654 Pyruvate kinase (EC 2.7.1.40) 0.50 Ac3H11_412 3'-to-5' exoribonuclease RNase R low > 79
Dechlorosoma suillum PS 0.69 Dsui_0052 pyruvate kinase 0.49 Dsui_3128 ribonuclease R low > 51
Pseudomonas putida KT2440 0.49 PP_1362 pyruvate kinase II 0.42 PP_4880 exoribonuclease R low > 96
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_1404 pyruvate kinase 0.42 B158DRAFT_1989 ribonuclease R low > 40
Pseudomonas fluorescens GW456-L13 0.49 PfGW456L13_1813 Pyruvate kinase (EC 2.7.1.40) 0.41 PfGW456L13_144 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_5494 Pyruvate kinase (EC 2.7.1.40) 0.43 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R low > 103
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_17830 pyruvate kinase 0.43 AO356_08610 exoribonuclease R low > 104
Pseudomonas stutzeri RCH2 0.49 Psest_3190 pyruvate kinase 0.41 Psest_0691 ribonuclease R low > 67
Pseudomonas simiae WCS417 0.49 PS417_22620 pyruvate kinase 0.43 PS417_02555 exoribonuclease R low > 88
Castellaniella sp019104865 MT123 0.49 ABCV34_RS02525 pyruvate kinase 0.51 ABCV34_RS06625 ribonuclease R low > 48
Pseudomonas fluorescens FW300-N2E3 0.49 AO353_03775 pyruvate kinase 0.42 AO353_13200 exoribonuclease R low > 101
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_678 Pyruvate kinase (EC 2.7.1.40) 0.42 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R low > 87
Alteromonas macleodii MIT1002 0.48 MIT1002_02409 Pyruvate kinase II 0.39 MIT1002_03606 Ribonuclease R — —
Pseudomonas syringae pv. syringae B728a 0.48 Psyr_4029 pyruvate kinase 0.41 Psyr_0579 RNAse R low > 86
Pseudomonas fluorescens SBW25 0.48 PFLU_RS24255 pyruvate kinase 0.43 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.48 Psyr_4029 pyruvate kinase 0.41 Psyr_0579 RNAse R low > 86
Pseudomonas fluorescens SBW25-INTG 0.48 PFLU_RS24255 pyruvate kinase 0.43 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas sp. RS175 0.48 PFR28_03455 Pyruvate kinase II 0.42 PFR28_05130 Ribonuclease R low > 88
Pectobacterium carotovorum WPP14 0.48 HER17_RS11790 pyruvate kinase 0.38 HER17_RS03835 ribonuclease R low > 75
Dickeya dianthicola ME23 0.48 DZA65_RS10570 pyruvate kinase 0.38 DZA65_RS18405 ribonuclease R low > 75
Dickeya dianthicola 67-19 0.48 HGI48_RS10155 pyruvate kinase 0.38 HGI48_RS17315 ribonuclease R low > 71
Dickeya dadantii 3937 0.48 DDA3937_RS10125 pyruvate kinase 0.38 DDA3937_RS17260 ribonuclease R low > 74
Shewanella amazonensis SB2B 0.48 Sama_1814 pyruvate kinase (RefSeq) 0.39 Sama_3067 exoribonuclease II (RefSeq) low > 62
Shewanella loihica PV-4 0.47 Shew_2050 pyruvate kinase (RefSeq) 0.40 Shew_3289 ribonuclease R (RefSeq) — —
Serratia liquefaciens MT49 0.47 IAI46_14585 pyruvate kinase 0.38 IAI46_01660 ribonuclease R low > 86
Shewanella sp. ANA-3 0.47 Shewana3_2153 pyruvate kinase (RefSeq) 0.40 Shewana3_0697 RNAse R (RefSeq) low > 73
Rahnella sp. WP5 0.47 EX31_RS10640 pyruvate kinase 0.39 EX31_RS08785 ribonuclease R low > 89
Shewanella oneidensis MR-1 0.47 SO2491 pykA pyruvate kinase II (NCBI ptt file) 0.40 SO3935 vacB ribonuclease R (NCBI ptt file) low > 76
Escherichia coli BW25113 0.47 b1854 pykA pyruvate kinase (NCBI) 0.40 b4179 vacB putative enzyme (VIMSS) 0.25 57
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_10025 pyruvate kinase 0.39 CSW01_13155 ribonuclease R low > 62
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_01874 Pyruvate kinase II 0.40 OHPLBJKB_03863 Ribonuclease R low > 73
Escherichia coli BL21 0.47 ECD_01825 pyruvate kinase II 0.40 ECD_04046 exoribonuclease R, RNase R 0.57 20
Pantoea sp. MT58 0.47 IAI47_08485 pyruvate kinase 0.39 IAI47_02625 ribonuclease R low > 76
Escherichia coli ECOR38 0.47 HEPCGN_04725 pyk pyruvate kinase 0.40 HEPCGN_10450 rnr ribonuclease R low > 87
Escherichia coli ECRC62 0.47 BNILDI_15630 pyk pyruvate kinase 0.40 BNILDI_07005 rnr ribonuclease R low > 75
Escherichia coli ECOR27 0.47 NOLOHH_16835 pyk pyruvate kinase 0.40 NOLOHH_04485 rnr ribonuclease R low > 75
Escherichia coli Nissle 1917 0.47 ECOLIN_RS10330 pyruvate kinase 0.40 ECOLIN_RS24265 ribonuclease R low > 55
Escherichia fergusonii Becca 0.47 EFB2_02088 Pyruvate kinase II 0.40 EFB2_04356 Ribonuclease R 0.27 76
Escherichia coli ECRC98 0.47 JDDGAC_00895 pyk pyruvate kinase 0.40 JDDGAC_15860 rnr ribonuclease R low > 86
Erwinia tracheiphila SCR3 0.47 LU632_RS13370 pyk pyruvate kinase 0.39 LU632_RS21750 rnr ribonuclease R low > 74
Escherichia coli ECRC99 0.47 KEDOAH_01785 pyk pyruvate kinase 0.40 KEDOAH_15935 rnr ribonuclease R — —
Escherichia coli ECRC100 0.47 OKFHMN_26320 pyk pyruvate kinase 0.40 OKFHMN_12220 rnr ribonuclease R low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF1633 Pyruvate kinase (EC 2.7.1.40) 0.40 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 0.79 19
Marinobacter adhaerens HP15 0.47 HP15_2176 pyruvate kinase II 0.40 HP15_622 exoribonuclease R low > 73
Escherichia coli ECRC102 0.47 NIAGMN_01740 pyk pyruvate kinase 0.40 NIAGMN_10070 rnr ribonuclease R — —
Escherichia coli ECRC101 0.47 MCAODC_19085 pyk pyruvate kinase 0.40 MCAODC_02735 rnr ribonuclease R low > 87
Klebsiella michiganensis M5al 0.46 BWI76_RS18115 pyruvate kinase 0.39 BWI76_RS02575 exoribonuclease R low > 92
Enterobacter asburiae PDN3 0.46 EX28DRAFT_0702 pyruvate kinase 0.39 EX28DRAFT_3376 ribonuclease R low > 76
Enterobacter sp. TBS_079 0.46 MPMX20_02759 Pyruvate kinase II 0.39 MPMX20_00460 Ribonuclease R low > 85
Pseudomonas sp. S08-1 0.46 OH686_18800 pyruvate kinase 0.41 OH686_15910 ribonuclease R low > 80
Rhodanobacter denitrificans MT42 0.45 LRK55_RS05530 pyruvate kinase 0.36 LRK55_RS00235 ribonuclease R low > 63
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS05775 pyruvate kinase 0.36 LRK54_RS00495 ribonuclease R low > 59
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_01070 pyk pyruvate kinase 0.37 OKGIIK_06755 rnr ribonuclease R low > 52
Lysobacter sp. OAE881 0.43 ABIE51_RS17040 pyruvate kinase 0.37 ABIE51_RS07475 ribonuclease R low > 62
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.1243.1 Pyruvate kinase (EC 2.7.1.40) 0.38 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R low > 74
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS18630 pyruvate kinase 0.36 ABZR86_RS08270 ribonuclease R low > 74

Not shown: 1 genomes with orthologs for RS_RS02865 only; 23 genomes with orthologs for RS_RS06155 only