Conservation of cofitness between QEN71_RS00175 and QEN71_RS25795 in Paraburkholderia sabiae LMG 24235

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Paraburkholderia sabiae LMG 24235 1.0 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 1.0 QEN71_RS25795 YqgE/AlgH family protein 0.60 18
Paraburkholderia bryophila 376MFSha3.1 0.82 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase 0.91 H281DRAFT_04814 putative transcriptional regulator low > 103
Paraburkholderia graminis OAS925 0.80 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase 0.92 ABIE53_001128 putative transcriptional regulator low > 113
Burkholderia phytofirmans PsJN 0.80 BPHYT_RS01475 16S rRNA methyltransferase 0.91 BPHYT_RS04220 hypothetical protein low > 109
Ralstonia solanacearum PSI07 0.48 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.79 RPSI07_RS20650 YqgE/AlgH family protein low > 81
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.76 ABZR87_RS08610 YqgE/AlgH family protein low > 80
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.77 RALBFv3_RS12610 DUF179 domain-containing protein low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.77 UW163_RS00955 DUF179 domain-containing protein — —
Ralstonia solanacearum GMI1000 0.46 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.78 RS_RS03395 YqgE/AlgH family protein — —
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS20450 16S rRNA methyltransferase 0.76 RR42_RS15875 hypothetical protein low > 128
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS00355 methyltransferase 0.62 HSERO_RS02315 transcriptional regulator low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.61 GFF648 UPF0301 protein YqgE low > 90
Variovorax sp. SCN45 0.35 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) 0.60 GFF2157 UPF0301 protein YqgE low > 127
Castellaniella sp019104865 MT123 0.35 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.55 ABCV34_RS10730 YqgE/AlgH family protein low > 48
Acidovorax sp. GW101-3H11 0.34 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.61 Ac3H11_3981 UPF0301 protein YqgE low > 79
Dechlorosoma suillum PS 0.33 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB 0.52 Dsui_0593 putative transcriptional regulator low > 51
Variovorax sp. OAS795 0.33 ABID97_RS05360 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.61 ABID97_RS24675 YqgE/AlgH family protein low > 91
Dickeya dianthicola 67-19 0.31 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.41 HGI48_RS18500 YqgE/AlgH family protein low > 71
Dickeya dianthicola ME23 0.31 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.41 DZA65_RS19635 YqgE/AlgH family protein low > 75
Dickeya dadantii 3937 0.31 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.40 DDA3937_RS18565 YqgE/AlgH family protein low > 74
Enterobacter sp. TBS_079 0.30 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B 0.38 MPMX20_03806 hypothetical protein low > 85
Escherichia coli ECOR38 0.30 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.40 HEPCGN_18575 yqgE YqgE/AlgH family protein low > 87
Escherichia coli ECRC62 0.30 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.40 BNILDI_09720 yqgE YqgE/AlgH family protein low > 75
Escherichia coli ECOR27 0.30 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.40 NOLOHH_11140 yqgE YqgE/AlgH family protein low > 75
Escherichia coli BW25113 0.30 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) 0.40 b2948 yqgE orf, hypothetical protein (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B 0.40 OHPLBJKB_00770 hypothetical protein low > 73
Escherichia coli BL21 0.30 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent 0.40 ECD_02778 uncharacterized protein low > 61
Escherichia fergusonii Becca 0.29 EFB2_00535 Ribosomal RNA small subunit methyltransferase B 0.40 EFB2_00954 hypothetical protein low > 86
Escherichia coli Nissle 1917 0.29 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.40 ECOLIN_RS16400 YqgE/AlgH family protein low > 55
Escherichia coli ECRC99 0.29 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.40 KEDOAH_08870 algH YqgE/AlgH family protein — —
Escherichia coli ECRC98 0.29 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.40 JDDGAC_22900 yqgE YqgE/AlgH family protein low > 86
Escherichia coli ECRC102 0.29 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.40 NIAGMN_17035 yqgE YqgE/AlgH family protein — —
Escherichia coli ECRC101 0.29 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.40 MCAODC_09790 yqgE YqgE/AlgH family protein low > 87
Escherichia coli ECRC100 0.29 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.40 OKFHMN_19270 yqgE YqgE/AlgH family protein low > 80
Erwinia tracheiphila SCR3 0.29 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.38 LU632_RS05475 YqgE/AlgH family protein low > 74
Pantoea sp. MT58 0.29 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.39 IAI47_03610 YqgE/AlgH family protein low > 76
Pectobacterium carotovorum WPP14 0.29 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.39 HER17_RS02630 YqgE/AlgH family protein low > 75
Rahnella sp. WP5 0.29 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.39 EX31_RS02670 YqgE/AlgH family protein low > 89
Enterobacter asburiae PDN3 0.29 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.39 EX28DRAFT_2986 Putative transcriptional regulator low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 0.38 GFF3050 UPF0301 protein YqgE low > 78
Marinobacter adhaerens HP15 0.28 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase 0.44 HP15_3510 transcriptional regulator low > 73
Klebsiella michiganensis M5al 0.28 BWI76_RS25680 16S rRNA m5C967 methyltransferase 0.40 BWI76_RS24080 DUF179 domain-containing protein low > 92
Shewanella amazonensis SB2B 0.27 Sama_0041 sun protein (RefSeq) 0.43 Sama_2472 putative transcriptional regulator (RefSeq) low > 62
Serratia liquefaciens MT49 0.27 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.40 IAI46_21395 YqgE/AlgH family protein low > 86
Alteromonas macleodii MIT1002 0.27 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B 0.44 MIT1002_03056 hypothetical protein low > 70
Pseudomonas sp. S08-1 0.27 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.48 OH686_10925 UPF0301 protein YqgE low > 80
Pseudomonas stutzeri RCH2 0.26 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB 0.43 Psest_0294 Putative transcriptional regulator low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.43 Psyr_0485 Protein of unknown function DUF179 low > 86
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.43 Psyr_0485 Protein of unknown function DUF179 low > 86
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_10630 16S rRNA methyltransferase 0.46 AO353_08120 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.45 Pf6N2E2_4609 UPF0301 protein YqgE low > 103
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.47 Pf1N1B4_2350 UPF0301 protein YqgE low > 87
Pseudomonas simiae WCS417 0.25 PS417_00085 16S rRNA methyltransferase 0.44 PS417_26685 hypothetical protein low > 88
Pseudomonas fluorescens SBW25 0.25 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.45 PFLU_RS28330 YqgE/AlgH family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.45 PFLU_RS28330 YqgE/AlgH family protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.25 AO356_11275 16S rRNA methyltransferase 0.46 AO356_13465 hypothetical protein low > 104
Pseudomonas putida KT2440 0.25 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.47 PP_4995 putative protein possibly involved in the control of exopolysaccharide production low > 96
Shewanella loihica PV-4 0.25 Shew_3738 sun protein (RefSeq) 0.40 Shew_1144 hypothetical protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.25 Shewana3_0033 sun protein (RefSeq) 0.45 Shewana3_1200 hypothetical protein (RefSeq) low > 73
Pseudomonas fluorescens GW456-L13 0.25 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.46 PfGW456L13_1019 UPF0301 protein YqgE low > 87
Pseudomonas sp. RS175 0.25 PFR28_04663 Ribosomal RNA small subunit methyltransferase B 0.46 PFR28_04234 hypothetical protein low > 88
Shewanella oneidensis MR-1 0.24 SO0030 sun sun protein (NCBI ptt file) 0.44 SO3346 conserved hypothetical protein (NCBI ptt file) low > 76
Lysobacter sp. OAE881 0.23 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.41 ABIE51_RS16025 YqgE/AlgH family protein low > 62
Acinetobacter radioresistens SK82 0.23 MPMX26_03021 Ribosomal RNA small subunit methyltransferase B 0.38 MPMX26_00238 hypothetical protein low > 36
Xanthomonas campestris pv. campestris strain 8004 0.20 Xcc-8004.4741.1 hypothetical protein 0.44 Xcc-8004.1720.1 UPF0301 protein YqgE low > 74
Caulobacter crescentus NA1000 Δfur 0.18 CCNA_00101 16S rRNA m5C methyltransferase RsmB 0.38 CCNA_03506 putative transcriptional regulator low > 67
Caulobacter crescentus NA1000 0.18 CCNA_00101 16S rRNA m5C methyltransferase RsmB 0.38 CCNA_03506 putative transcriptional regulator low > 66
Rhodopseudomonas palustris CGA009 0.17 TX73_000155 transcription antitermination factor NusB 0.40 TX73_004710 YqgE/AlgH family protein low > 86
Azospirillum sp. SherDot2 0.16 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B 0.44 MPMX19_01077 hypothetical protein low > 112
Dinoroseobacter shibae DFL-12 0.16 Dshi_3033 Fmu (Sun) domain protein (RefSeq) 0.43 Dshi_3083 protein of unknown function DUF179 (RefSeq) low > 64
Azospirillum brasilense Sp245 0.16 AZOBR_RS00235 MFS transporter 0.43 AZOBR_RS10525 hypothetical protein low > 97
Brevundimonas sp. GW460-12-10-14-LB2 0.13 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.33 A4249_RS00260 YqgE/AlgH family protein low > 48

Not shown: 0 genomes with orthologs for QEN71_RS00175 only; 24 genomes with orthologs for QEN71_RS25795 only