| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Paraburkholderia sabiae LMG 24235 | 1.0 | QEN71_RS37445 | | LysR family transcriptional regulator | 1.0 | QEN71_RS22370 | | ATP-dependent chaperone ClpB | 0.46 | 2 |
| Burkholderia phytofirmans PsJN | 0.81 | BPHYT_RS30350 | | LysR family transcriptional regulator | 0.97 | BPHYT_RS08990 | | protein disaggregation chaperone | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.77 | H281DRAFT_01092 | | transcriptional regulator, LysR family | 0.96 | H281DRAFT_00817 | | ATP-dependent Clp protease ATP-binding subunit ClpB | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.77 | ABIE53_002240 | | DNA-binding transcriptional LysR family regulator | 0.96 | ABIE53_002033 | | ATP-dependent Clp protease ATP-binding subunit ClpB | low | > 113 |
| Dechlorosoma suillum PS | 0.46 | Dsui_1258 | | transcriptional regulator | 0.79 | Dsui_2161 | | ATP-dependent chaperone ClpB | low | > 51 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS14560 | | LysR substrate-binding domain-containing protein | 0.69 | ABZR86_RS10940 | | ATP-dependent chaperone ClpB | low | > 74 |
| Ralstonia solanacearum PSI07 | 0.45 | RPSI07_RS13590 | | LysR family transcriptional regulator | 0.82 | RPSI07_RS17450 | | ATP-dependent chaperone ClpB | low | > 81 |
| Cupriavidus basilensis FW507-4G11 | 0.45 | RR42_RS14800 | | LysR family transcriptional regulator | 0.81 | RR42_RS12455 | | protein disaggregation chaperone | low | > 128 |
| Ralstonia solanacearum UW163 | 0.45 | UW163_RS10030 | | LysR family transcriptional regulator | 0.81 | UW163_RS13360 | | ATP-dependent chaperone ClpB | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.45 | RALBFv3_RS03640 | | LysR family transcriptional regulator | 0.81 | RALBFv3_RS00030 | | ATP-dependent chaperone ClpB | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.45 | RS_RS11085 | | LysR family transcriptional regulator | 0.81 | RS_RS06695 | | chaperone protein ClpB | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS15530 | | LysR substrate-binding domain-containing protein | 0.82 | ABZR87_RS11485 | | ATP-dependent chaperone ClpB | low | > 80 |
| Serratia liquefaciens MT49 | 0.44 | IAI46_07350 | | LysR family transcriptional regulator | 0.67 | IAI46_03995 | | ATP-dependent chaperone ClpB | low | > 86 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.43 | Xcc-8004.3097.1 | | Transcriptional regulator | 0.69 | Xcc-8004.1382.1 | | ClpB protein | low | > 74 |
| Marinobacter adhaerens HP15 | 0.40 | HP15_502 | | transcriptional regulator, LysR family protein | 0.68 | HP15_529 | | protein disaggregation chaperone | low | > 73 |
| Rahnella sp. WP5 | 0.40 | EX31_RS05190 | | LysR family transcriptional regulator | 0.67 | EX31_RS07560 | | ATP-dependent chaperone ClpB | 0.35 | 87 |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_0543 | | Transcriptional regulator | 0.68 | EX28DRAFT_2693 | | ATP-dependent chaperone ClpB | low | > 76 |
| Klebsiella michiganensis M5al | 0.39 | BWI76_RS06255 | | LysR family transcriptional regulator | 0.68 | BWI76_RS21440 | | ATP-dependent chaperone ClpB | low | > 92 |
| Escherichia coli Nissle 1917 | 0.39 | ECOLIN_RS11920 | | LysR substrate-binding domain-containing protein | 0.68 | ECOLIN_RS14665 | | ATP-dependent chaperone ClpB | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.39 | OHPLBJKB_01685 | | HTH-type transcriptional regulator YhaJ | 0.68 | OHPLBJKB_01114 | | Chaperone protein ClpB | low | > 73 |
| Escherichia coli BW25113 | 0.38 | b2015 | yeeY | putative transcriptional regulator LYSR-type (VIMSS) | 0.68 | b2592 | clpB | protein disaggregation chaperone (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.38 | KEDOAH_03615 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | 0.68 | KEDOAH_06955 | clpB | ATP-dependent chaperone ClpB | — | — |
| Escherichia coli ECRC100 | 0.38 | OKFHMN_24535 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | 0.68 | OKFHMN_21265 | clpB | ATP-dependent chaperone ClpB | low | > 80 |
| Escherichia coli BL21 | 0.38 | ECD_01918 | | LysR family putative transcriptional regulator | 0.68 | ECD_02482 | | protein disaggregation chaperone | low | > 61 |
| Escherichia coli ECRC98 | 0.38 | JDDGAC_28645 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | 0.68 | JDDGAC_24930 | clpB | ATP-dependent chaperone ClpB | low | > 86 |
| Escherichia fergusonii Becca | 0.38 | EFB2_01841 | | HTH-type transcriptional regulator YhaJ | 0.68 | EFB2_01298 | | Chaperone protein ClpB | low | > 86 |
| Herbaspirillum seropedicae SmR1 | 0.38 | HSERO_RS17845 | | LysR family transcriptional regulator | 0.78 | HSERO_RS10545 | | protein disaggregation chaperone | low | > 78 |
| Escherichia coli ECRC102 | 0.38 | NIAGMN_22480 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | 0.68 | NIAGMN_19035 | clpB | ATP-dependent chaperone ClpB | — | — |
| Escherichia coli ECRC101 | 0.38 | MCAODC_20405 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | 0.68 | MCAODC_11795 | clpB | ATP-dependent chaperone ClpB | low | > 87 |
| Escherichia coli ECRC62 | 0.38 | BNILDI_14760 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | 0.68 | BNILDI_11745 | clpB | ATP-dependent chaperone ClpB | low | > 75 |
| Escherichia coli ECOR27 | 0.38 | NOLOHH_15860 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | 0.68 | NOLOHH_12940 | clpB | ATP-dependent chaperone ClpB | low | > 75 |
| Escherichia coli ECOR38 | 0.38 | HEPCGN_03240 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | 0.68 | HEPCGN_20390 | clpB | ATP-dependent chaperone ClpB | low | > 87 |
| Enterobacter sp. TBS_079 | 0.38 | MPMX20_02999 | | HTH-type transcriptional regulator YhaJ | 0.68 | MPMX20_03461 | | Chaperone protein ClpB | low | > 85 |
| Shewanella amazonensis SB2B | 0.37 | Sama_1388 | | LysR family transcriptional regulator (RefSeq) | 0.66 | Sama_2603 | | clpB protein (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.36 | SO3318 | | transcriptional regulator, LysR family (NCBI ptt file) | 0.67 | SO3577 | clpB | clpB protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.36 | Shewana3_1223 | | LysR family transcriptional regulator (RefSeq) | 0.67 | Shewana3_3169 | | ATPase (RefSeq) | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.36 | GFF3915 | | Hypothetical transcriptional regulator yeeY | 0.68 | GFF4184 | | ClpB protein | low | > 78 |
| Variovorax sp. SCN45 | 0.35 | GFF4501 | | Transcriptional regulator, LysR family | 0.76 | GFF2792 | | Chaperone protein ClpB (ATP-dependent unfoldase) | low | > 127 |
| Variovorax sp. OAS795 | 0.35 | ABID97_RS29065 | | LysR family transcriptional regulator | 0.76 | ABID97_RS10930 | | ATP-dependent chaperone ClpB | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.32 | CSW01_17100 | | LysR family transcriptional regulator | 0.67 | CSW01_03705 | | chaperone protein ClpB | low | > 62 |
| Dickeya dianthicola ME23 | 0.32 | DZA65_RS02905 | | LysR family transcriptional regulator | 0.68 | DZA65_RS17320 | | ATP-dependent chaperone ClpB | low | > 75 |
| Dickeya dianthicola 67-19 | 0.32 | HGI48_RS02750 | | LysR family transcriptional regulator | 0.68 | HGI48_RS16225 | | ATP-dependent chaperone ClpB | low | > 71 |
| Dickeya dadantii 3937 | 0.32 | DDA3937_RS02775 | | LysR family transcriptional regulator | 0.67 | DDA3937_RS16100 | | ATP-dependent chaperone ClpB | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.31 | HER17_RS18770 | | LysR family transcriptional regulator | 0.68 | HER17_RS05410 | | ATP-dependent chaperone ClpB | low | > 75 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF5181 | | LysR-family transcriptional regulator | 0.76 | GFF3942 | | ClpB protein | low | > 90 |
| Pantoea sp. MT58 | 0.30 | IAI47_02820 | | LysR family transcriptional regulator | 0.67 | IAI47_04435 | | ATP-dependent chaperone ClpB | low | > 76 |
| Shewanella loihica PV-4 | 0.30 | Shew_2013 | | putative DNA-binding transcriptional regulator (RefSeq) | 0.66 | Shew_2948 | | ATPase (RefSeq) | low | > 60 |
| Erwinia tracheiphila SCR3 | 0.30 | LU632_RS02265 | | LysR family transcriptional regulator | 0.67 | LU632_RS16935 | clpB | ATP-dependent chaperone ClpB | low | > 74 |
| Pseudomonas simiae WCS417 | 0.26 | PS417_08030 | | transcriptional regulator | 0.67 | PS417_03830 | | protein disaggregation chaperone | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.26 | PFLU_RS08000 | | LysR family transcriptional regulator | 0.67 | PFLU_RS03880 | | ATP-dependent chaperone ClpB | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.26 | PFLU_RS08000 | | LysR family transcriptional regulator | 0.67 | PFLU_RS03880 | | ATP-dependent chaperone ClpB | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.20 | Psyr_3825 | | transcriptional regulator, LysR family | 0.66 | Psyr_0728 | | AAA ATPase, central region:Clp, N terminal:Clp, N terminal | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.20 | Psyr_3825 | | transcriptional regulator, LysR family | 0.66 | Psyr_0728 | | AAA ATPase, central region:Clp, N terminal:Clp, N terminal | low | > 86 |
| Pseudomonas sp. S08-1 | 0.19 | OH686_05450 | | Transcriptional regulator, LysR family | 0.66 | OH686_16420 | | ATP-dependent chaperone protein ClpB | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.19 | AO353_18280 | | LysR family transcriptional regulator | 0.67 | AO353_14230 | | ATP-dependent chaperone ClpB | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.19 | PfGW456L13_4458 | | Transcriptional regulator, LysR family | 0.67 | PfGW456L13_1495 | | ClpB protein | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.18 | Pf6N2E2_2682 | | Transcriptional regulator, LysR family | 0.67 | Pf6N2E2_5129 | | ClpB protein | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.18 | AO356_04235 | | LysR family transcriptional regulator | 0.67 | AO356_15935 | | ATP-dependent chaperone ClpB | low | > 104 |
| Castellaniella sp019104865 MT123 | 0.18 | ABCV34_RS00975 | | LysR family transcriptional regulator | 0.73 | ABCV34_RS06205 | | ATP-dependent chaperone ClpB | low | > 48 |
| Agrobacterium fabrum C58 | 0.18 | Atu1209 | | transcriptional regulator, LysR family | 0.55 | Atu4177 | | ATP-dependent Clp protease, ATP-binding subunit | low | > 89 |
| Pseudomonas sp. RS175 | 0.18 | PFR28_00748 | | HTH-type transcriptional regulator YhaJ | 0.67 | PFR28_03746 | | Chaperone protein ClpB | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.18 | Pf1N1B4_548 | | Transcriptional regulator, LysR family | 0.67 | Pf1N1B4_2824 | | ClpB protein | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.18 | Psest_1624 | | Transcriptional regulator | 0.67 | Psest_0711 | | ATP-dependent chaperone ClpB | low | > 67 |
| Pseudomonas putida KT2440 | 0.17 | PP_4539 | | Transcriptional regulator, LysR family | 0.67 | PP_0625 | | Chaperone protein ClpB | low | > 96 |
| Azospirillum sp. SherDot2 | 0.17 | MPMX19_06778 | | HTH-type transcriptional regulator YhaJ | 0.58 | MPMX19_02442 | | Chaperone protein ClpB | low | > 112 |
| Rhizobium sp. OAE497 | 0.16 | ABIE40_RS08235 | | LysR family transcriptional regulator | 0.55 | ABIE40_RS17260 | | ATP-dependent chaperone ClpB | low | > 107 |
| Alteromonas macleodii MIT1002 | 0.16 | MIT1002_02374 | | HTH-type transcriptional activator AllS | 0.67 | MIT1002_02677 | | Heat shock protein F84.1 | low | > 70 |
| Sphingomonas koreensis DSMZ 15582 | 0.15 | Ga0059261_3906 | | Transcriptional regulator | 0.56 | Ga0059261_1434 | | ATP-dependent chaperone ClpB | low | > 68 |
| Rhodopseudomonas palustris CGA009 | 0.14 | TX73_022195 | | LysR family transcriptional regulator | 0.55 | TX73_023005 | | ATP-dependent chaperone ClpB | low | > 86 |
| Caulobacter crescentus NA1000 | 0.14 | CCNA_00832 | | LysR-family transcriptional regulator | 0.57 | CCNA_00922 | | ClpB protein | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.14 | CCNA_00832 | | LysR-family transcriptional regulator | 0.57 | CCNA_00922 | | ClpB protein | low | > 67 |
| Sinorhizobium meliloti 1021 | 0.14 | SMa0353 | | LysR family transcriptional regulator | 0.55 | SMc02433 | | ATP-dependent protease | low | > 103 |
Not shown: 0 genomes with orthologs for QEN71_RS37445 only; 30 genomes with orthologs for QEN71_RS22370 only