Conservation of cofitness between Psyr_4828 and Psyr_4140 in Pseudomonas syringae pv. syringae B728a

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4828 urocanate hydratase 1.0 Psyr_4140 Protein of unknown function DUF140 0.38 11
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4828 urocanate hydratase 1.00 Psyr_4140 Protein of unknown function DUF140 low > 86
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_09630 Urocanate hydratase (EC 4.2.1.49) (from data) 0.90 AO356_07000 ABC transporter permease low > 104
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_3805 Urocanate hydratase (EC 4.2.1.49) (from data) 0.90 Pf6N2E2_3259 Uncharacterized ABC transporter, permease component YrbE — —
Pseudomonas sp. RS175 0.91 PFR28_04965 Urocanate hydratase 0.89 PFR28_00180 Intermembrane phospholipid transport system permease protein MlaE low > 88
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS01775 urocanate hydratase 0.85 PFLU_RS04435 lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 109
Pseudomonas fluorescens SBW25 0.91 PFLU_RS01775 urocanate hydratase 0.85 PFLU_RS04435 lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 109
Serratia liquefaciens MT49 0.91 IAI46_03665 urocanate hydratase 0.64 IAI46_22425 lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 86
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_12250 Urocanate hydratase (EC 4.2.1.49) (from data) 0.85 AO353_05145 ABC transporter permease low > 101
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_326 Urocanate hydratase (EC 4.2.1.49) (from data) 0.85 PfGW456L13_5007 Uncharacterized ABC transporter, permease component YrbE — —
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_1587 Urocanate hydratase (EC 4.2.1.49) (from data) 0.83 Pf1N1B4_1073 Uncharacterized ABC transporter, permease component YrbE — —
Pseudomonas simiae WCS417 0.90 PS417_01720 Urocanate hydratase (EC 4.2.1.49) (from data) 0.86 PS417_04380 ABC transporter permease low > 88
Cupriavidus basilensis FW507-4G11 0.89 RR42_RS14645 urocanate hydratase 0.54 RR42_RS18965 ABC transporter permease low > 128
Pseudomonas putida KT2440 0.89 PP_5033 Urocanate hydratase 0.89 PP_0959 phospholipid ABC transporter low > 96
Pseudomonas sp. S08-1 0.88 OH686_16745 urocanate hydratase 0.85 OH686_08505 Phospholipid ABC transporter permease protein MlaE low > 80
Enterobacter asburiae PDN3 0.88 EX28DRAFT_2220 urocanate hydratase (EC 4.2.1.49) 0.61 EX28DRAFT_3248 ABC transport permease subunit low > 76
Enterobacter sp. TBS_079 0.87 MPMX20_01399 Urocanate hydratase 0.61 MPMX20_04100 Intermembrane phospholipid transport system permease protein MlaE low > 85
Klebsiella michiganensis M5al 0.87 BWI76_RS08735 Urocanate hydratase (EC 4.2.1.49) (from data) 0.61 BWI76_RS25225 ABC transporter permease low > 92
Dyella japonica UNC79MFTsu3.2 0.81 ABZR86_RS07755 urocanate hydratase 0.48 ABZR86_RS11880 lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 74
Rhodanobacter denitrificans MT42 0.81 LRK55_RS16070 urocanate hydratase 0.47 LRK55_RS11490 lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 63
Rhodanobacter denitrificans FW104-10B01 0.81 LRK54_RS16320 urocanate hydratase 0.47 LRK54_RS11765 lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 59
Rhodanobacter sp. FW510-T8 0.80 OKGIIK_08350 hutU urocanate hydratase 0.46 OKGIIK_12130 mlaE lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 52
Lysobacter sp. OAE881 0.79 ABIE51_RS06295 urocanate hydratase 0.36 ABIE51_RS01010 MlaE family lipid ABC transporter permease subunit low > 62
Azospirillum sp. SherDot2 0.75 MPMX19_04936 Urocanate hydratase 0.30 MPMX19_06141 Intermembrane phospholipid transport system permease protein MlaE low > 112
Variovorax sp. SCN45 0.75 GFF6408 Urocanate hydratase (EC 4.2.1.49) 0.49 GFF5335 Phospholipid ABC transporter permease protein MlaE low > 127
Alteromonas macleodii MIT1002 0.74 MIT1002_00904 Urocanate hydratase 0.62 MIT1002_00835 putative phospholipid ABC transporter permease protein MlaE low > 70
Caulobacter crescentus NA1000 0.74 CCNA_01008 urocanate hydratase 0.31 CCNA_03809 organic solvent resistance transport system permease low > 66
Caulobacter crescentus NA1000 Δfur 0.74 CCNA_01008 urocanate hydratase 0.31 CCNA_03809 organic solvent resistance transport system permease low > 67
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS01030 urocanate hydratase 0.52 ABZR87_RS02550 lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 80
Variovorax sp. OAS795 0.74 ABID97_RS03425 urocanate hydratase 0.49 ABID97_RS23210 lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 91
Azospirillum brasilense Sp245 0.74 AZOBR_RS21740 urocanate hydratase 0.30 AZOBR_RS08345 ABC transporter permease low > 97
Rhodospirillum rubrum S1H 0.74 Rru_A1304 Urocanate hydratase (NCBI) 0.29 Rru_A0408 Protein of unknown function DUF140 (NCBI) — —
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_06085 urocanate hydratase 0.65 CSW01_12770 ABC transporter permease low > 62
Acidovorax sp. GW101-3H11 0.74 Ac3H11_2557 Urocanate hydratase (EC 4.2.1.49) (from data) 0.48 Ac3H11_4713 Uncharacterized ABC transporter, permease component YrbE low > 79
Ralstonia solanacearum PSI07 0.73 RPSI07_RS11910 urocanate hydratase 0.51 RPSI07_RS10340 ABC transporter permease low > 81
Rahnella sp. WP5 0.73 EX31_RS06760 urocanate hydratase 0.63 EX31_RS12440 lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 89
Shewanella loihica PV-4 0.73 Shew_3757 urocanate hydratase (RefSeq) 0.61 Shew_3303 hypothetical protein (RefSeq) low > 60
Hydrogenophaga sp. GW460-11-11-14-LB1 0.73 GFF3590 Urocanate hydratase (EC 4.2.1.49) 0.46 GFF1324 Uncharacterized ABC transporter, permease component YrbE low > 90
Xanthomonas campestris pv. campestris strain 8004 0.73 Xcc-8004.3298.1 Urocanate hydratase (EC 4.2.1.49) 0.40 Xcc-8004.5365.1 Uncharacterized ABC transporter, permease component YrbE low > 74
Dickeya dadantii 3937 0.72 DDA3937_RS14990 urocanate hydratase 0.64 DDA3937_RS01570 lipid asymmetry maintenance ABC transporter permease subunit MlaE 0.34 50
Ralstonia solanacearum UW163 0.72 UW163_RS08230 urocanate hydratase 0.52 UW163_RS06720 ABC transporter permease — —
Ralstonia solanacearum IBSBF1503 0.72 RALBFv3_RS05395 urocanate hydratase 0.52 RALBFv3_RS06895 ABC transporter permease — —
Escherichia coli ECOR38 0.72 HEPCGN_01335 hutU urocanate hydratase 0.61 HEPCGN_16855 mlaE lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 87
Ralstonia solanacearum GMI1000 0.72 RS_RS13255 urocanate hydratase 0.52 RS_RS14840 ABC transporter permease low > 80
Pantoea sp. MT58 0.72 IAI47_13280 urocanate hydratase 0.64 IAI47_17140 lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 76
Paraburkholderia graminis OAS925 0.72 ABIE53_001731 urocanate hydratase 0.53 ABIE53_003711 phospholipid/cholesterol/gamma-HCH transport system permease protein low > 113
Paraburkholderia bryophila 376MFSha3.1 0.72 H281DRAFT_04871 urocanate hydratase 0.53 H281DRAFT_05642 phospholipid/cholesterol/gamma-HCH transport system permease protein low > 103
Burkholderia phytofirmans PsJN 0.72 BPHYT_RS07565 urocanate hydratase 0.51 BPHYT_RS17760 ABC transporter permease low > 109
Phaeobacter inhibens DSM 17395 0.72 PGA1_c36320 Urocanate hydratase (EC 4.2.1.49) (from data) 0.25 PGA1_c10870 conserved hypothetical integral membrane protein low > 62
Shewanella sp. ANA-3 0.72 Shewana3_0100 urocanate hydratase (RefSeq) 0.61 Shewana3_0679 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.72 SO0097 hutU urocanate hydratase (NCBI ptt file) 0.61 SO3953 conserved hypothetical protein TIGR00056 (NCBI ptt file) low > 76
Dickeya dianthicola 67-19 0.71 HGI48_RS15085 urocanate hydratase 0.63 HGI48_RS01485 lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 71
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS23505 urocanate hydratase 0.53 QEN71_RS27915 lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 153
Dickeya dianthicola ME23 0.71 DZA65_RS15830 urocanate hydratase 0.63 DZA65_RS01550 lipid asymmetry maintenance ABC transporter permease subunit MlaE low > 75
Castellaniella sp019104865 MT123 0.71 ABCV34_RS12785 urocanate hydratase 0.49 ABCV34_RS11185 lipid asymmetry maintenance ABC transporter permease subunit MlaE — —
Shewanella amazonensis SB2B 0.26 Sama_1632 Urocanate hydratase (EC 4.2.1.49) (from data) 0.62 Sama_3080 hypothetical protein (RefSeq) low > 62
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS11595 urocanate hydratase 0.20 HMPREF1078_RS17075 ABC transporter permease low > 61

Not shown: 8 genomes with orthologs for Psyr_4828 only; 31 genomes with orthologs for Psyr_4140 only