Conservation of cofitness between Psyr_5016 and Psyr_3696 in Pseudomonas syringae pv. syringae B728a

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_5016 Alanine dehydrogenase/PNT, C-terminal:Alanine dehydrogenase/PNT, N-terminal 1.0 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.35 7
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_5016 Alanine dehydrogenase/PNT, C-terminal:Alanine dehydrogenase/PNT, N-terminal 1.00 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase low > 86
Pseudomonas putida KT2440 0.89 PP_0156 pyridine nucleotide transhydrogenase subunit alpha 0.68 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 96
Pseudomonas sp. RS175 0.88 PFR28_04725 NAD(P) transhydrogenase subunit alpha part 1 0.75 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 88
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_4038 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) 0.75 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 103
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_10860 NADP transhydrogenase subunit alpha 0.75 AO356_19055 23S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_11090 NADP transhydrogenase subunit alpha 0.72 AO353_02715 23S rRNA methyltransferase low > 101
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_556 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) 0.74 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 87
Pseudomonas simiae WCS417 0.86 PS417_00570 NADP transhydrogenase subunit alpha 0.76 PS417_20155 23S rRNA methyltransferase low > 88
Pseudomonas fluorescens SBW25 0.86 PFLU_RS00555 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.74 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS00555 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.74 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_1818 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) 0.75 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 87
Pseudomonas sp. S08-1 0.85 OH686_11925 NAD(P) transhydrogenase N-domain of subunit alpha 0.71 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA low > 80
Pseudomonas stutzeri RCH2 0.83 Psest_4203 NAD/NADP transhydrogenase alpha subunit 0.64 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA low > 67
Cupriavidus basilensis FW507-4G11 0.79 RR42_RS17490 NADP transhydrogenase subunit alpha 0.31 RR42_RS13170 23S rRNA methyltransferase low > 128
Ralstonia solanacearum PSI07 0.75 RPSI07_RS11530 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha 0.29 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 81
Paraburkholderia bryophila 376MFSha3.1 0.74 H281DRAFT_04653 NAD(P) transhydrogenase subunit alpha 0.31 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase low > 103
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS01340 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.29 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 80
Burkholderia phytofirmans PsJN 0.74 BPHYT_RS03370 NAD(P) transhydrogenase subunit alpha 0.31 BPHYT_RS09125 23S rRNA methyltransferase low > 109
Ralstonia solanacearum GMI1000 0.74 RS_RS13660 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha 0.29 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 80
Paraburkholderia sabiae LMG 24235 0.73 QEN71_RS26730 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.31 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 153
Ralstonia solanacearum IBSBF1503 0.72 RALBFv3_RS05770 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha 0.29 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.28 49
Ralstonia solanacearum UW163 0.72 UW163_RS07855 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha 0.29 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Castellaniella sp019104865 MT123 0.68 ABCV34_RS10170 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.30 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 48
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS03480 NAD(P) transhydrogenase subunit alpha 0.29 HSERO_RS14825 23S rRNA methyltransferase low > 78
Variovorax sp. SCN45 0.66 GFF4908 NAD(P) transhydrogenase N-domain of subunit alpha (EC 1.6.1.2) 0.28 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF2603 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) 0.28 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 90
Acinetobacter radioresistens SK82 0.49 MPMX26_00528 NAD(P) transhydrogenase subunit alpha part 1 0.37 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Caulobacter crescentus NA1000 0.49 CCNA_03414 Rubrum transdehydrogenase NAD-binding 0.15 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein low > 66
Caulobacter crescentus NA1000 Δfur 0.49 CCNA_03414 Rubrum transdehydrogenase NAD-binding 0.15 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.48 A4249_RS09095 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.13 A4249_RS08425 class I SAM-dependent RNA methyltransferase low > 48
Rhizobium sp. OAE497 0.47 ABIE40_RS16600 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.16 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.38 74
Azospirillum brasilense Sp245 0.47 AZOBR_RS06425 NAD(P) transhydrogenase subunit alpha 0.14 AZOBR_RS01195 RNA methyltransferase low > 97
Rhodospirillum rubrum S1H 0.47 Rru_A2183 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) 0.12 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) — —
Rhodopseudomonas palustris CGA009 0.46 TX73_021680 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.16 TX73_004885 methyltransferase — —
Sinorhizobium meliloti 1021 0.46 SMc03950 proton-translocating nicotinamide nucleotide transhydrogenase subunit protein 0.14 SMc00974 RNA methyltransferase low > 103
Azospirillum sp. SherDot2 0.44 MPMX19_01278 NAD(P) transhydrogenase subunit alpha part 1 0.15 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 112
Shewanella loihica PV-4 0.44 Shew_0664 NAD(P) transhydrogenase subunit alpha (RefSeq) 0.35 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) low > 60
Bosea sp. OAE506 0.44 ABIE41_RS09280 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.15 ABIE41_RS22255 RNA methyltransferase low > 77
Sphingomonas koreensis DSMZ 15582 0.44 Ga0059261_1971 NAD/NADP transhydrogenase alpha subunit 0.12 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase low > 68
Dechlorosoma suillum PS 0.41 Dsui_2935 NAD/NADP transhydrogenase alpha subunit 0.30 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA low > 51
Lysobacter sp. OAE881 0.41 ABIE51_RS05530 NAD(P) transhydrogenase subunit alpha 0.32 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 62
Mycobacterium tuberculosis H37Rv 0.41 Rv0155 Probable NAD(P) transhydrogenase (subunit alpha) PntAa [first part; catalytic part] (pyridine nucleotide transhydrogenase subunit alpha) (nicotinamide nucleotide transhydrogenase subunit alpha) 0.08 Rv2689c Conserved alanine and valine and glycine rich protein low > 58
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_10700 pntA NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha 0.33 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 52
Alteromonas macleodii MIT1002 0.40 MIT1002_03909 NAD(P) transhydrogenase subunit alpha part 1 0.31 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 70
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS03850 NAD(P) transhydrogenase subunit alpha 0.33 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 59
Rhodanobacter denitrificans MT42 0.39 LRK55_RS03600 NAD(P) transhydrogenase subunit alpha 0.33 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 63
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS22145 NAD(P) transhydrogenase subunit alpha 0.34 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 74
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_1612 pntA pyridine nucleotide transhydrogenase alpha subunit 0.18 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA low > 38
Bifidobacterium breve UCC2003 0.33 BBR_RS15185 NAD(P) transhydrogenase subunit alpha 0.13 BBR_RS16615 class I SAM-dependent RNA methyltransferase low > 34
Bacteroides ovatus ATCC 8483 0.15 BACOVA_04297 alanine dehydrogenase 0.17 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA low > 94
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_0201 alanine dehydrogenase 0.19 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA low > 79
Bacteroides stercoris CC31F 0.14 HMPREF1181_RS10690 alanine dehydrogenase 0.16 HMPREF1181_RS16525 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 56
Bacteroides thetaiotaomicron VPI-5482 0.14 BT1554 alanine dehydrogenase (NCBI ptt file) 0.16 BT0643 RNA methyltransferase (NCBI ptt file) low > 81
Pontibacter actiniarum KMM 6156, DSM 19842 0.14 CA264_04350 alanine dehydrogenase 0.17 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA low > 74
Phocaeicola vulgatus CL09T03C04 0.13 HMPREF1058_RS05025 alanine dehydrogenase 0.15 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 67
Phocaeicola dorei CL03T12C01 0.13 ABI39_RS18840 alanine dehydrogenase 0.15 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 72
Parabacteroides merdae CL09T00C40 0.12 HMPREF1078_RS07210 alanine dehydrogenase 0.17 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 61
Kangiella aquimarina DSM 16071 0.12 B158DRAFT_1823 alanine dehydrogenase 0.36 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA low > 40
Desulfovibrio vulgaris Miyazaki F 0.10 DvMF_0517 alanine dehydrogenase (RefSeq) 0.19 DvMF_1383 RNA methyltransferase, TrmA family (RefSeq) low > 51

Not shown: 4 genomes with orthologs for Psyr_5016 only; 39 genomes with orthologs for Psyr_3696 only